data_X9Z # _chem_comp.id X9Z _chem_comp.name "(1R,2S,5S)-N-[(2S,3R)-4-(azetidin-1-yl)-3-hydroxy-4-oxo-1-(2-oxopyrrolidin-1-yl)butan-2-yl]-6,6-dimethyl-3-[3-methyl-N-(trifluoroacetyl)-L-valyl]-3-azabicyclo[3.1.0]hexane-2-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C27 H40 F3 N5 O6" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-11-08 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 587.632 _chem_comp.one_letter_code ? _chem_comp.three_letter_code X9Z _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8F2C _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal X9Z N1 N1 N 0 1 N N N N N N -19.496 15.762 -27.097 -0.890 0.044 -0.655 N1 X9Z 1 X9Z N3 N2 N 0 1 N N N N N N -17.960 13.409 -24.968 2.776 -0.289 -0.862 N3 X9Z 2 X9Z C4 C1 C 0 1 N N S N N N -20.606 17.121 -25.517 -0.590 2.414 -0.506 C4 X9Z 3 X9Z C5 C2 C 0 1 N N N N N N -19.420 17.913 -25.030 -0.891 2.500 -2.004 C5 X9Z 4 X9Z C6 C3 C 0 1 N N N N N N -18.575 18.575 -26.096 -1.980 1.579 -2.558 C6 X9Z 5 X9Z C7 C4 C 0 1 N N N N N N -19.591 18.742 -23.769 -0.795 3.877 -2.665 C7 X9Z 6 X9Z C8 C5 C 0 1 N N N N N N -20.654 16.660 -26.952 -1.101 1.181 0.270 C8 X9Z 7 X9Z C10 C6 C 0 1 N N S N N N -19.860 15.482 -29.486 -2.964 -1.164 -0.059 C10 X9Z 8 X9Z C13 C7 C 0 1 N N N N N N -19.449 13.150 -30.542 -3.275 -3.560 -0.697 C13 X9Z 9 X9Z C15 C8 C 0 1 N N N N N N -19.402 17.362 -30.960 -4.254 0.479 1.196 C15 X9Z 10 X9Z C17 C9 C 0 1 N N S N N N -18.075 12.128 -24.254 3.858 -0.710 0.031 C17 X9Z 11 X9Z C20 C10 C 0 1 N N N N N N -19.984 10.312 -20.149 4.770 1.624 2.186 C20 X9Z 12 X9Z C21 C11 C 0 1 N N N N N N -21.303 11.090 -20.241 5.262 3.036 2.553 C21 X9Z 13 X9Z C22 C12 C 0 1 N N N N N N -20.479 12.276 -20.768 4.724 3.473 1.179 C22 X9Z 14 X9Z C24 C13 C 0 1 N N N N N N -18.722 10.303 -26.665 1.656 -3.150 -0.690 C24 X9Z 15 X9Z C26 C14 C 0 1 N N N N N N -17.090 9.987 -28.389 0.898 -3.781 1.495 C26 X9Z 16 X9Z C1 C15 C 0 1 N N N N N N -19.008 14.046 -25.495 1.545 -0.053 -0.365 C1 X9Z 17 X9Z O1 O1 O 0 1 N N N N N N -20.110 13.546 -25.690 1.345 -0.146 0.828 O1 X9Z 18 X9Z C2 C16 C 0 1 N N S N N N -18.805 15.497 -25.851 0.418 0.326 -1.291 C2 X9Z 19 X9Z N2 N3 N 0 1 N N N N N N -19.006 16.226 -30.408 -3.635 0.134 0.049 N2 X9Z 20 X9Z O2 O2 O 0 1 N N N N N N -20.442 17.946 -30.729 -4.256 -0.286 2.137 O2 X9Z 21 X9Z C3 C17 C 0 1 N N R N N N -19.460 16.422 -24.839 0.412 1.850 -1.535 C3 X9Z 22 X9Z O3 O3 O 0 1 N N N N N N -17.976 14.625 -28.279 -1.414 -1.838 -1.706 O3 X9Z 23 X9Z N4 N4 N 0 1 N N N N N N -19.425 11.308 -21.063 4.878 2.058 0.779 N4 X9Z 24 X9Z O4 O4 O 0 1 N N N N N N -18.793 13.521 -22.441 5.464 -0.504 -1.763 O4 X9Z 25 X9Z N5 N5 N 0 1 N N N N N N -17.398 10.729 -26.217 2.685 -2.838 0.309 N5 X9Z 26 X9Z O5 O5 O 0 1 N N N N N N -17.827 10.155 -22.024 5.106 2.058 -1.428 O5 X9Z 27 X9Z O6 O6 O 0 1 N N N N N N -15.326 11.127 -27.107 2.937 -3.021 2.555 O6 X9Z 28 X9Z C9 C18 C 0 1 N N N N N N -19.034 15.229 -28.229 -1.701 -1.012 -0.867 C9 X9Z 29 X9Z C11 C19 C 0 1 N N N N N N -20.475 14.212 -30.121 -3.895 -2.162 -0.752 C11 X9Z 30 X9Z C12 C20 C 0 1 N N N N N N -21.441 13.642 -29.083 -5.249 -2.176 -0.040 C12 X9Z 31 X9Z C14 C21 C 0 1 N N N N N N -21.271 14.654 -31.356 -4.091 -1.748 -2.212 C14 X9Z 32 X9Z C16 C22 C 0 1 N N N N N N -18.427 17.978 -31.965 -4.943 1.814 1.307 C16 X9Z 33 X9Z C18 C23 C 0 1 N N R N N N -17.917 12.431 -22.744 5.174 -0.079 -0.430 C18 X9Z 34 X9Z C19 C24 C 0 1 N N N N N N -18.387 11.226 -21.891 5.050 1.422 -0.396 C19 X9Z 35 X9Z C23 C25 C 0 1 N N N N N N -17.101 11.093 -24.832 3.983 -2.234 -0.003 C23 X9Z 36 X9Z C25 C26 C 0 1 N N N N N N -18.449 9.555 -27.950 0.693 -4.137 0.005 C25 X9Z 37 X9Z C27 C27 C 0 1 N N N N N N -16.474 10.677 -27.187 2.284 -3.177 1.546 C27 X9Z 38 X9Z F1 F1 F 0 1 N N N N N N -18.906 18.038 -33.222 -5.950 1.902 0.340 F1 X9Z 39 X9Z F2 F2 F 0 1 N N N N N N -18.037 19.158 -31.500 -5.508 1.942 2.581 F2 X9Z 40 X9Z F3 F3 F 0 1 N N N N N N -17.309 17.290 -32.021 -4.012 2.838 1.105 F3 X9Z 41 X9Z H1 H1 H 0 1 N N N N N N -17.054 13.822 -25.063 2.944 -0.180 -1.811 H1 X9Z 42 X9Z H2 H2 H 0 1 N N N N N N -21.555 17.217 -24.970 -0.386 3.327 0.054 H2 X9Z 43 X9Z H3 H3 H 0 1 N N N N N N -17.746 19.120 -25.621 -2.940 1.841 -2.113 H3 X9Z 44 X9Z H4 H4 H 0 1 N N N N N N -18.170 17.807 -26.772 -2.037 1.694 -3.640 H4 X9Z 45 X9Z H5 H5 H 0 1 N N N N N N -19.195 19.279 -26.670 -1.737 0.544 -2.315 H5 X9Z 46 X9Z H6 H6 H 0 1 N N N N N N -20.215 18.191 -23.049 -0.365 4.589 -1.960 H6 X9Z 47 X9Z H7 H7 H 0 1 N N N N N N -18.605 18.939 -23.324 -0.161 3.812 -3.549 H7 X9Z 48 X9Z H8 H8 H 0 1 N N N N N N -20.077 19.696 -24.021 -1.791 4.211 -2.956 H8 X9Z 49 X9Z H9 H9 H 0 1 N N N N N N -20.569 17.516 -27.637 -2.160 1.291 0.502 H9 X9Z 50 X9Z H10 H10 H 0 1 N N N N N N -21.591 16.120 -27.155 -0.523 1.041 1.183 H10 X9Z 51 X9Z H11 H11 H 0 1 N N N N N N -20.698 16.134 -29.198 -2.717 -1.530 0.937 H11 X9Z 52 X9Z H12 H12 H 0 1 N N N N N N -18.873 12.827 -29.662 -3.151 -3.862 0.343 H12 X9Z 53 X9Z H13 H13 H 0 1 N N N N N N -19.973 12.285 -30.975 -3.930 -4.268 -1.204 H13 X9Z 54 X9Z H14 H14 H 0 1 N N N N N N -18.766 13.577 -31.291 -2.303 -3.546 -1.190 H14 X9Z 55 X9Z H15 H15 H 0 1 N N N N N N -19.094 11.741 -24.404 3.637 -0.386 1.048 H15 X9Z 56 X9Z H16 H16 H 0 1 N N N N N N -20.023 9.289 -20.550 5.467 0.831 2.456 H16 X9Z 57 X9Z H17 H17 H 0 1 N N N N N N -19.527 10.296 -19.149 3.748 1.418 2.505 H17 X9Z 58 X9Z H18 H18 H 0 1 N N N N N N -21.800 11.268 -19.276 4.731 3.481 3.394 H18 X9Z 59 X9Z H19 H19 H 0 1 N N N N N N -22.030 10.680 -20.958 6.346 3.112 2.646 H19 X9Z 60 X9Z H20 H20 H 0 1 N N N N N N -20.216 13.028 -20.010 3.688 3.811 1.200 H20 X9Z 61 X9Z H21 H21 H 0 1 N N N N N N -20.904 12.778 -21.650 5.383 4.157 0.646 H21 X9Z 62 X9Z H22 H22 H 0 1 N N N N N N -19.371 11.172 -26.848 1.123 -2.243 -0.978 H22 X9Z 63 X9Z H23 H23 H 0 1 N N N N N N -19.193 9.644 -25.921 2.109 -3.615 -1.566 H23 X9Z 64 X9Z H24 H24 H 0 1 N N N N N N -16.486 9.116 -28.683 0.153 -3.055 1.820 H24 X9Z 65 X9Z H25 H25 H 0 1 N N N N N N -17.164 10.685 -29.236 0.850 -4.679 2.112 H25 X9Z 66 X9Z H26 H26 H 0 1 N N N N N N -17.732 15.724 -25.935 0.506 -0.212 -2.235 H26 X9Z 67 X9Z H27 H27 H 0 1 N N N N N N -18.099 15.868 -30.628 -3.632 0.745 -0.704 H27 X9Z 68 X9Z H28 H28 H 0 1 N N N N N N -19.620 16.036 -23.822 1.362 2.343 -1.741 H28 X9Z 69 X9Z H29 H29 H 0 1 N N N N N N -18.723 13.737 -21.518 4.788 -0.259 -2.410 H29 X9Z 70 X9Z H30 H30 H 0 1 N N N N N N -20.878 13.323 -28.194 -5.109 -2.471 1.000 H30 X9Z 71 X9Z H31 H31 H 0 1 N N N N N N -22.170 14.415 -28.797 -5.690 -1.180 -0.079 H31 X9Z 72 X9Z H32 H32 H 0 1 N N N N N N -21.971 12.778 -29.511 -5.911 -2.887 -0.533 H32 X9Z 73 X9Z H33 H33 H 0 1 N N N N N N -22.009 15.415 -31.064 -4.724 -2.479 -2.715 H33 X9Z 74 X9Z H34 H34 H 0 1 N N N N N N -20.583 15.078 -32.103 -4.565 -0.768 -2.251 H34 X9Z 75 X9Z H35 H35 H 0 1 N N N N N N -21.791 13.786 -31.787 -3.122 -1.703 -2.710 H35 X9Z 76 X9Z H36 H36 H 0 1 N N N N N N -16.869 12.672 -22.514 5.979 -0.393 0.235 H36 X9Z 77 X9Z H37 H37 H 0 1 N N N N N N -17.150 10.184 -24.214 4.302 -2.551 -0.996 H37 X9Z 78 X9Z H38 H38 H 0 1 N N N N N N -16.084 11.510 -24.791 4.719 -2.555 0.735 H38 X9Z 79 X9Z H39 H39 H 0 1 N N N N N N -19.199 9.815 -28.712 -0.338 -3.958 -0.301 H39 X9Z 80 X9Z H40 H40 H 0 1 N N N N N N -18.468 8.469 -27.773 0.983 -5.169 -0.193 H40 X9Z 81 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal X9Z F1 C16 SING N N 1 X9Z F3 C16 SING N N 2 X9Z C16 F2 SING N N 3 X9Z C16 C15 SING N N 4 X9Z C14 C11 SING N N 5 X9Z C15 O2 DOUB N N 6 X9Z C15 N2 SING N N 7 X9Z C13 C11 SING N N 8 X9Z N2 C10 SING N N 9 X9Z C11 C10 SING N N 10 X9Z C11 C12 SING N N 11 X9Z C10 C9 SING N N 12 X9Z C26 C25 SING N N 13 X9Z C26 C27 SING N N 14 X9Z O3 C9 DOUB N N 15 X9Z C9 N1 SING N N 16 X9Z C25 C24 SING N N 17 X9Z C27 O6 DOUB N N 18 X9Z C27 N5 SING N N 19 X9Z N1 C8 SING N N 20 X9Z N1 C2 SING N N 21 X9Z C8 C4 SING N N 22 X9Z C24 N5 SING N N 23 X9Z N5 C23 SING N N 24 X9Z C6 C5 SING N N 25 X9Z C2 C1 SING N N 26 X9Z C2 C3 SING N N 27 X9Z O1 C1 DOUB N N 28 X9Z C4 C5 SING N N 29 X9Z C4 C3 SING N N 30 X9Z C1 N3 SING N N 31 X9Z C5 C3 SING N N 32 X9Z C5 C7 SING N N 33 X9Z N3 C17 SING N N 34 X9Z C23 C17 SING N N 35 X9Z C17 C18 SING N N 36 X9Z C18 O4 SING N N 37 X9Z C18 C19 SING N N 38 X9Z O5 C19 DOUB N N 39 X9Z C19 N4 SING N N 40 X9Z N4 C22 SING N N 41 X9Z N4 C20 SING N N 42 X9Z C22 C21 SING N N 43 X9Z C21 C20 SING N N 44 X9Z N3 H1 SING N N 45 X9Z C4 H2 SING N N 46 X9Z C6 H3 SING N N 47 X9Z C6 H4 SING N N 48 X9Z C6 H5 SING N N 49 X9Z C7 H6 SING N N 50 X9Z C7 H7 SING N N 51 X9Z C7 H8 SING N N 52 X9Z C8 H9 SING N N 53 X9Z C8 H10 SING N N 54 X9Z C10 H11 SING N N 55 X9Z C13 H12 SING N N 56 X9Z C13 H13 SING N N 57 X9Z C13 H14 SING N N 58 X9Z C17 H15 SING N N 59 X9Z C20 H16 SING N N 60 X9Z C20 H17 SING N N 61 X9Z C21 H18 SING N N 62 X9Z C21 H19 SING N N 63 X9Z C22 H20 SING N N 64 X9Z C22 H21 SING N N 65 X9Z C24 H22 SING N N 66 X9Z C24 H23 SING N N 67 X9Z C26 H24 SING N N 68 X9Z C26 H25 SING N N 69 X9Z C2 H26 SING N N 70 X9Z N2 H27 SING N N 71 X9Z C3 H28 SING N N 72 X9Z O4 H29 SING N N 73 X9Z C12 H30 SING N N 74 X9Z C12 H31 SING N N 75 X9Z C12 H32 SING N N 76 X9Z C14 H33 SING N N 77 X9Z C14 H34 SING N N 78 X9Z C14 H35 SING N N 79 X9Z C18 H36 SING N N 80 X9Z C23 H37 SING N N 81 X9Z C23 H38 SING N N 82 X9Z C25 H39 SING N N 83 X9Z C25 H40 SING N N 84 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor X9Z SMILES ACDLabs 12.01 "CC1(C)C2C(C(=O)NC(CN3CCCC3=O)C(O)C(=O)N3CCC3)N(CC21)C(=O)C(NC(=O)C(F)(F)F)C(C)(C)C" X9Z InChI InChI 1.06 "InChI=1S/C27H40F3N5O6/c1-25(2,3)20(32-24(41)27(28,29)30)23(40)35-12-14-17(26(14,4)5)18(35)21(38)31-15(13-34-9-6-8-16(34)36)19(37)22(39)33-10-7-11-33/h14-15,17-20,37H,6-13H2,1-5H3,(H,31,38)(H,32,41)/t14-,15-,17-,18-,19+,20+/m0/s1" X9Z InChIKey InChI 1.06 XDHKGBBFOISQMJ-AMQFHODYSA-N X9Z SMILES_CANONICAL CACTVS 3.385 "CC(C)(C)[C@H](NC(=O)C(F)(F)F)C(=O)N1C[C@H]2[C@@H]([C@H]1C(=O)N[C@@H](CN3CCCC3=O)[C@@H](O)C(=O)N4CCC4)C2(C)C" X9Z SMILES CACTVS 3.385 "CC(C)(C)[CH](NC(=O)C(F)(F)F)C(=O)N1C[CH]2[CH]([CH]1C(=O)N[CH](CN3CCCC3=O)[CH](O)C(=O)N4CCC4)C2(C)C" X9Z SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC1([C@@H]2[C@H]1[C@H](N(C2)C(=O)[C@H](C(C)(C)C)NC(=O)C(F)(F)F)C(=O)N[C@@H](CN3CCCC3=O)[C@H](C(=O)N4CCC4)O)C" X9Z SMILES "OpenEye OEToolkits" 2.0.7 "CC1(C2C1C(N(C2)C(=O)C(C(C)(C)C)NC(=O)C(F)(F)F)C(=O)NC(CN3CCCC3=O)C(C(=O)N4CCC4)O)C" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier X9Z "SYSTEMATIC NAME" ACDLabs 12.01 "(1R,2S,5S)-N-[(2S,3R)-4-(azetidin-1-yl)-3-hydroxy-4-oxo-1-(2-oxopyrrolidin-1-yl)butan-2-yl]-6,6-dimethyl-3-[3-methyl-N-(trifluoroacetyl)-L-valyl]-3-azabicyclo[3.1.0]hexane-2-carboxamide" X9Z "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(1~{R},2~{S},5~{S})-~{N}-[(2~{S},3~{R})-4-(azetidin-1-yl)-3-oxidanyl-4-oxidanylidene-1-(2-oxidanylidenepyrrolidin-1-yl)butan-2-yl]-3-[(2~{S})-3,3-dimethyl-2-[2,2,2-tris(fluoranyl)ethanoylamino]butanoyl]-6,6-dimethyl-3-azabicyclo[3.1.0]hexane-2-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site X9Z "Create component" 2022-11-08 RCSB X9Z "Initial release" 2023-10-11 RCSB X9Z "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id X9Z _pdbx_chem_comp_pcm.modified_residue_id CYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C18 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #