data_XA1 # _chem_comp.id XA1 _chem_comp.name "{(5R)-5-amino-5-carboxy-5-[1-(4-chlorobenzyl)piperidin-4-yl]pentyl}(trihydroxy)borate(1-)" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C18 H29 B Cl N2 O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge -1 _chem_comp.pdbx_initial_date 2013-02-12 _chem_comp.pdbx_modified_date 2013-12-06 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 399.697 _chem_comp.one_letter_code ? _chem_comp.three_letter_code XA1 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 4IXV _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal XA1 CL1 CL1 CL 0 0 N N N 38.398 83.060 80.191 6.951 -3.152 0.005 CL1 XA1 1 XA1 C23 C23 C 0 1 Y N N 36.957 83.506 79.206 5.839 -1.827 0.158 C23 XA1 2 XA1 C22 C22 C 0 1 Y N N 36.804 84.817 78.751 6.314 -0.529 0.209 C22 XA1 3 XA1 C21 C21 C 0 1 Y N N 35.691 85.166 77.991 5.429 0.526 0.331 C21 XA1 4 XA1 C24 C24 C 0 1 Y N N 35.992 82.544 78.893 4.479 -2.069 0.222 C24 XA1 5 XA1 C25 C25 C 0 1 Y N N 34.884 82.897 78.126 3.595 -1.014 0.344 C25 XA1 6 XA1 C20 C20 C 0 1 Y N N 34.724 84.208 77.677 4.070 0.283 0.401 C20 XA1 7 XA1 C19 C19 C 0 1 N N N 33.513 84.573 76.834 3.105 1.433 0.534 C19 XA1 8 XA1 N16 N16 N 0 1 N N N 33.897 85.542 75.785 2.705 1.893 -0.803 N16 XA1 9 XA1 C15 C15 C 0 1 N N N 32.648 86.137 75.265 1.957 3.155 -0.724 C15 XA1 10 XA1 C14 C14 C 0 1 N N N 32.851 87.050 74.054 0.669 2.936 0.072 C14 XA1 11 XA1 C17 C17 C 0 1 N N N 34.680 84.842 74.739 1.932 0.861 -1.505 C17 XA1 12 XA1 C18 C18 C 0 1 N N N 34.219 85.141 73.311 0.642 0.574 -0.733 C18 XA1 13 XA1 C13 C13 C 0 1 N N N 34.041 86.647 73.194 -0.177 1.863 -0.619 C13 XA1 14 XA1 C4 C4 C 0 1 N N R 33.956 87.166 71.751 -1.438 1.596 0.204 C4 XA1 15 XA1 C1 C1 C 0 1 N N N 34.188 88.650 71.851 -2.293 2.837 0.230 C1 XA1 16 XA1 O3 O3 O 0 1 N N N 35.234 89.046 72.405 -3.125 3.057 1.260 O3 XA1 17 XA1 O2 O2 O 0 1 N N N 33.298 89.419 71.427 -2.228 3.635 -0.675 O2 XA1 18 XA1 N5 N5 N 0 1 N N N 32.616 86.986 71.173 -1.060 1.233 1.576 N5 XA1 19 XA1 C6 C6 C 0 1 N N N 35.017 86.471 70.903 -2.227 0.447 -0.428 C6 XA1 20 XA1 C7 C7 C 0 1 N N N 35.193 87.026 69.506 -3.488 0.181 0.395 C7 XA1 21 XA1 C8 C8 C 0 1 N N N 36.508 86.542 68.870 -4.277 -0.968 -0.237 C8 XA1 22 XA1 C9 C9 C 0 1 N N N 36.866 87.421 67.664 -5.538 -1.234 0.586 C9 XA1 23 XA1 B10 B10 B -1 1 N N N 37.388 86.550 66.441 -6.361 -2.433 -0.074 B10 XA1 24 XA1 O27 O27 O 0 1 N N N 37.917 87.630 65.462 -7.489 -2.672 0.662 O27 XA1 25 XA1 O12 O12 O 0 1 N N N 36.356 85.899 65.548 -6.714 -2.095 -1.350 O12 XA1 26 XA1 O11 O11 O 0 1 N N N 38.621 85.724 66.693 -5.587 -3.559 -0.098 O11 XA1 27 XA1 H1 H1 H 0 1 N N N 37.550 85.561 78.989 7.376 -0.339 0.155 H1 XA1 28 XA1 H2 H2 H 0 1 N N N 35.575 86.182 77.643 5.799 1.539 0.371 H2 XA1 29 XA1 H3 H3 H 0 1 N N N 36.105 81.529 79.245 4.108 -3.082 0.177 H3 XA1 30 XA1 H4 H4 H 0 1 N N N 34.144 82.151 77.877 2.532 -1.203 0.394 H4 XA1 31 XA1 H5 H5 H 0 1 N N N 32.743 85.021 77.479 2.223 1.106 1.084 H5 XA1 32 XA1 H6 H6 H 0 1 N N N 33.112 83.665 76.361 3.586 2.251 1.070 H6 XA1 33 XA1 H8 H8 H 0 1 N N N 32.185 86.727 76.069 2.568 3.908 -0.226 H8 XA1 34 XA1 H9 H9 H 0 1 N N N 31.971 85.320 74.973 1.710 3.494 -1.729 H9 XA1 35 XA1 H10 H10 H 0 1 N N N 33.011 88.077 74.413 0.915 2.610 1.082 H10 XA1 36 XA1 H11 H11 H 0 1 N N N 31.943 87.015 73.434 0.107 3.869 0.118 H11 XA1 37 XA1 H12 H12 H 0 1 N N N 34.595 83.759 74.910 1.685 1.211 -2.507 H12 XA1 38 XA1 H13 H13 H 0 1 N N N 35.733 85.146 74.833 2.524 -0.051 -1.575 H13 XA1 39 XA1 H14 H14 H 0 1 N N N 33.264 84.633 73.111 0.061 -0.181 -1.263 H14 XA1 40 XA1 H15 H15 H 0 1 N N N 34.976 84.795 72.592 0.889 0.210 0.264 H15 XA1 41 XA1 H16 H16 H 0 1 N N N 34.931 87.110 73.645 -0.457 2.205 -1.616 H16 XA1 42 XA1 H17 H17 H 0 1 N N N 35.232 89.995 72.445 -3.653 3.867 1.232 H17 XA1 43 XA1 H18 H18 H 0 1 N N N 31.940 87.450 71.746 -1.876 1.115 2.157 H18 XA1 44 XA1 H19 H19 H 0 1 N N N 32.595 87.375 70.252 -0.486 0.403 1.585 H19 XA1 45 XA1 H21 H21 H 0 1 N N N 34.740 85.410 70.815 -2.508 0.717 -1.446 H21 XA1 46 XA1 H22 H22 H 0 1 N N N 35.981 86.557 71.427 -1.609 -0.450 -0.447 H22 XA1 47 XA1 H23 H23 H 0 1 N N N 35.203 88.125 69.556 -3.207 -0.089 1.413 H23 XA1 48 XA1 H24 H24 H 0 1 N N N 34.350 86.695 68.881 -4.106 1.079 0.414 H24 XA1 49 XA1 H25 H25 H 0 1 N N N 36.390 85.500 68.538 -4.558 -0.698 -1.255 H25 XA1 50 XA1 H26 H26 H 0 1 N N N 37.315 86.600 69.615 -3.659 -1.865 -0.256 H26 XA1 51 XA1 H27 H27 H 0 1 N N N 37.654 88.130 67.960 -5.258 -1.504 1.605 H27 XA1 52 XA1 H28 H28 H 0 1 N N N 35.971 87.978 67.350 -6.156 -0.337 0.605 H28 XA1 53 XA1 H29 H29 H 0 1 N N N 38.595 88.140 65.889 -8.087 -1.914 0.722 H29 XA1 54 XA1 H30 H30 H 0 1 N N N 35.929 85.193 66.019 -7.218 -2.779 -1.813 H30 XA1 55 XA1 H31 H31 H 0 1 N N N 38.412 85.017 67.292 -4.768 -3.463 -0.603 H31 XA1 56 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal XA1 O27 B10 SING N N 1 XA1 O12 B10 SING N N 2 XA1 B10 O11 SING N N 3 XA1 B10 C9 SING N N 4 XA1 C9 C8 SING N N 5 XA1 C8 C7 SING N N 6 XA1 C7 C6 SING N N 7 XA1 C6 C4 SING N N 8 XA1 N5 C4 SING N N 9 XA1 O2 C1 DOUB N N 10 XA1 C4 C1 SING N N 11 XA1 C4 C13 SING N N 12 XA1 C1 O3 SING N N 13 XA1 C13 C18 SING N N 14 XA1 C13 C14 SING N N 15 XA1 C18 C17 SING N N 16 XA1 C14 C15 SING N N 17 XA1 C17 N16 SING N N 18 XA1 C15 N16 SING N N 19 XA1 N16 C19 SING N N 20 XA1 C19 C20 SING N N 21 XA1 C20 C21 DOUB Y N 22 XA1 C20 C25 SING Y N 23 XA1 C21 C22 SING Y N 24 XA1 C25 C24 DOUB Y N 25 XA1 C22 C23 DOUB Y N 26 XA1 C24 C23 SING Y N 27 XA1 C23 CL1 SING N N 28 XA1 C22 H1 SING N N 29 XA1 C21 H2 SING N N 30 XA1 C24 H3 SING N N 31 XA1 C25 H4 SING N N 32 XA1 C19 H5 SING N N 33 XA1 C19 H6 SING N N 34 XA1 C15 H8 SING N N 35 XA1 C15 H9 SING N N 36 XA1 C14 H10 SING N N 37 XA1 C14 H11 SING N N 38 XA1 C17 H12 SING N N 39 XA1 C17 H13 SING N N 40 XA1 C18 H14 SING N N 41 XA1 C18 H15 SING N N 42 XA1 C13 H16 SING N N 43 XA1 O3 H17 SING N N 44 XA1 N5 H18 SING N N 45 XA1 N5 H19 SING N N 46 XA1 C6 H21 SING N N 47 XA1 C6 H22 SING N N 48 XA1 C7 H23 SING N N 49 XA1 C7 H24 SING N N 50 XA1 C8 H25 SING N N 51 XA1 C8 H26 SING N N 52 XA1 C9 H27 SING N N 53 XA1 C9 H28 SING N N 54 XA1 O27 H29 SING N N 55 XA1 O12 H30 SING N N 56 XA1 O11 H31 SING N N 57 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor XA1 SMILES ACDLabs 12.01 "O=C(O)C(N)(C2CCN(Cc1ccc(Cl)cc1)CC2)CCCC[B-](O)(O)O" XA1 InChI InChI 1.03 "InChI=1S/C18H29BClN2O5/c20-16-5-3-14(4-6-16)13-22-11-7-15(8-12-22)18(21,17(23)24)9-1-2-10-19(25,26)27/h3-6,15,25-27H,1-2,7-13,21H2,(H,23,24)/q-1/t18-/m1/s1" XA1 InChIKey InChI 1.03 ZRLSZURFUKVIRB-GOSISDBHSA-N XA1 SMILES_CANONICAL CACTVS 3.370 "N[C@](CCCC[B-](O)(O)O)(C1CCN(CC1)Cc2ccc(Cl)cc2)C(O)=O" XA1 SMILES CACTVS 3.370 "N[C](CCCC[B-](O)(O)O)(C1CCN(CC1)Cc2ccc(Cl)cc2)C(O)=O" XA1 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "[B-](CCCC[C@@](C1CCN(CC1)Cc2ccc(cc2)Cl)(C(=O)O)N)(O)(O)O" XA1 SMILES "OpenEye OEToolkits" 1.7.6 "[B-](CCCCC(C1CCN(CC1)Cc2ccc(cc2)Cl)(C(=O)O)N)(O)(O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier XA1 "SYSTEMATIC NAME" ACDLabs 12.01 "{(5R)-5-amino-5-carboxy-5-[1-(4-chlorobenzyl)piperidin-4-yl]pentyl}(trihydroxy)borate(1-)" XA1 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "[(5R)-5-azanyl-5-[1-[(4-chlorophenyl)methyl]piperidin-4-yl]-6-oxidanyl-6-oxidanylidene-hexyl]-tris(oxidanyl)boranuide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site XA1 "Create component" 2013-02-12 RCSB XA1 "Initial release" 2013-12-11 RCSB #