data_XA2 # _chem_comp.id XA2 _chem_comp.name "(R)-2-amino-6-borono-2-(1-(3,4-dichlorobenzyl)piperidin-4-yl)hexanoic acid" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C18 H28 B Cl2 N2 O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge -1 _chem_comp.pdbx_initial_date 2014-04-16 _chem_comp.pdbx_modified_date 2014-07-11 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 434.142 _chem_comp.one_letter_code ? _chem_comp.three_letter_code XA2 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 4Q3R _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal XA2 O01 O01 O 0 1 N N N -64.355 5.586 -0.813 7.491 -2.149 1.306 O01 XA2 1 XA2 B02 B02 B -1 1 N N N -64.781 4.225 -1.626 7.190 -2.448 0.007 B02 XA2 2 XA2 O03 O03 O 0 1 N N N -64.385 2.949 -0.721 8.346 -2.646 -0.695 O03 XA2 3 XA2 O04 O04 O 0 1 N N N -66.437 4.288 -1.794 6.431 -3.585 -0.034 O04 XA2 4 XA2 C05 C05 C 0 1 N N N -63.976 4.217 -3.139 6.373 -1.239 -0.642 C05 XA2 5 XA2 C06 C06 C 0 1 N N N -64.504 3.087 -4.012 5.079 -1.018 0.144 C06 XA2 6 XA2 C07 C07 C 0 1 N N N -63.309 2.445 -4.810 4.296 0.140 -0.478 C07 XA2 7 XA2 C08 C08 C 0 1 N N N -63.860 1.466 -5.895 3.002 0.362 0.308 C08 XA2 8 XA2 C09 C09 C 0 1 N N R -62.772 0.942 -6.888 2.220 1.520 -0.313 C09 XA2 9 XA2 N10 N10 N 0 1 N N N -61.803 0.155 -6.209 1.895 1.198 -1.710 N10 XA2 10 XA2 C11 C11 C 0 1 N N N -63.522 0.100 -7.928 0.926 1.741 0.473 C11 XA2 11 XA2 C12 C12 C 0 1 N N N -62.579 -0.304 -8.991 0.109 2.855 -0.189 C12 XA2 12 XA2 C13 C13 C 0 1 N N N -63.267 -1.221 -9.974 -1.211 3.030 0.566 C13 XA2 13 XA2 N14 N14 N 0 1 N N N -63.813 -2.405 -9.293 -1.961 1.768 0.541 N14 XA2 14 XA2 C15 C15 C 0 1 N N N -64.323 -3.367 -10.254 -3.294 1.936 1.136 C15 XA2 15 XA2 C16 C16 C 0 1 Y N N -63.239 -3.720 -11.284 -4.119 0.702 0.875 C16 XA2 16 XA2 C17 C17 C 0 1 Y N N -62.157 -4.493 -10.916 -4.102 -0.344 1.779 C17 XA2 17 XA2 C18 C18 C 0 1 Y N N -61.177 -4.806 -11.851 -4.859 -1.476 1.541 C18 XA2 18 XA2 C19 C19 C 0 1 Y N N -61.284 -4.353 -13.147 -5.634 -1.563 0.399 C19 XA2 19 XA2 CL1 CL1 CL 0 0 N N N -60.062 -4.735 -14.350 -6.585 -2.984 0.101 CL1 XA2 20 XA2 C21 C21 C 0 1 Y N N -62.368 -3.578 -13.522 -5.652 -0.515 -0.506 C21 XA2 21 XA2 CL2 CL2 CL 0 0 N N N -62.478 -3.013 -15.179 -6.624 -0.622 -1.939 CL2 XA2 22 XA2 C23 C23 C 0 1 Y N N -63.347 -3.266 -12.597 -4.898 0.620 -0.264 C23 XA2 23 XA2 C24 C24 C 0 1 N N N -64.819 -1.998 -8.273 -1.217 0.695 1.213 C24 XA2 24 XA2 C25 C25 C 0 1 N N N -64.189 -1.063 -7.270 0.103 0.450 0.478 C25 XA2 25 XA2 C26 C26 C 0 1 N N N -62.059 2.124 -7.548 3.056 2.773 -0.268 C26 XA2 26 XA2 O27 O27 O 0 1 N N N -62.681 2.983 -8.206 2.948 3.538 0.662 O27 XA2 27 XA2 O28 O28 O 0 1 N N N -60.817 2.216 -7.423 3.920 3.040 -1.259 O28 XA2 28 XA2 H1 H1 H 0 1 N N N -64.795 5.603 0.029 6.717 -1.995 1.865 H1 XA2 29 XA2 H2 H2 H 0 1 N N N -64.850 2.990 0.106 8.208 -2.862 -1.628 H2 XA2 30 XA2 H3 H3 H 0 1 N N N -66.843 4.291 -0.935 6.866 -4.361 0.344 H3 XA2 31 XA2 H4 H4 H 0 1 N N N -62.897 4.076 -2.976 6.977 -0.333 -0.609 H4 XA2 32 XA2 H5 H5 H 0 1 N N N -64.147 5.178 -3.646 6.132 -1.478 -1.678 H5 XA2 33 XA2 H6 H6 H 0 1 N N N -65.246 3.485 -4.719 4.474 -1.924 0.111 H6 XA2 34 XA2 H7 H7 H 0 1 N N N -64.975 2.322 -3.378 5.319 -0.779 1.180 H7 XA2 35 XA2 H8 H8 H 0 1 N N N -62.661 1.891 -4.114 4.901 1.047 -0.445 H8 XA2 36 XA2 H9 H9 H 0 1 N N N -62.727 3.241 -5.298 4.056 -0.098 -1.514 H9 XA2 37 XA2 H10 H10 H 0 1 N N N -64.633 1.991 -6.475 2.398 -0.545 0.275 H10 XA2 38 XA2 H11 H11 H 0 1 N N N -64.309 0.601 -5.385 3.243 0.600 1.344 H11 XA2 39 XA2 H12 H12 H 0 1 N N N -61.326 0.720 -5.536 1.335 0.361 -1.767 H12 XA2 40 XA2 H13 H13 H 0 1 N N N -62.257 -0.604 -5.743 1.435 1.974 -2.162 H13 XA2 41 XA2 H15 H15 H 0 1 N N N -64.300 0.735 -8.376 1.166 2.024 1.497 H15 XA2 42 XA2 H16 H16 H 0 1 N N N -61.725 -0.830 -8.539 0.673 3.787 -0.157 H16 XA2 43 XA2 H17 H17 H 0 1 N N N -62.220 0.592 -9.519 -0.096 2.589 -1.226 H17 XA2 44 XA2 H18 H18 H 0 1 N N N -62.540 -1.545 -10.733 -1.005 3.310 1.599 H18 XA2 45 XA2 H19 H19 H 0 1 N N N -64.088 -0.675 -10.462 -1.801 3.812 0.088 H19 XA2 46 XA2 H21 H21 H 0 1 N N N -65.190 -2.935 -10.774 -3.196 2.087 2.211 H21 XA2 47 XA2 H22 H22 H 0 1 N N N -64.631 -4.280 -9.724 -3.784 2.801 0.690 H22 XA2 48 XA2 H23 H23 H 0 1 N N N -62.071 -4.855 -9.902 -3.497 -0.277 2.671 H23 XA2 49 XA2 H24 H24 H 0 1 N N N -60.328 -5.407 -11.560 -4.844 -2.293 2.247 H24 XA2 50 XA2 H25 H25 H 0 1 N N N -64.197 -2.669 -12.893 -4.911 1.437 -0.969 H25 XA2 51 XA2 H26 H26 H 0 1 N N N -65.656 -1.487 -8.771 -1.010 0.985 2.243 H26 XA2 52 XA2 H27 H27 H 0 1 N N N -65.192 -2.892 -7.753 -1.811 -0.219 1.206 H27 XA2 53 XA2 H28 H28 H 0 1 N N N -64.972 -0.687 -6.595 -0.103 0.146 -0.548 H28 XA2 54 XA2 H29 H29 H 0 1 N N N -63.439 -1.620 -6.689 0.662 -0.336 0.986 H29 XA2 55 XA2 H30 H30 H 0 1 N N N -60.508 2.987 -7.884 4.434 3.855 -1.186 H30 XA2 56 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal XA2 CL2 C21 SING N N 1 XA2 CL1 C19 SING N N 2 XA2 C21 C19 DOUB Y N 3 XA2 C21 C23 SING Y N 4 XA2 C19 C18 SING Y N 5 XA2 C23 C16 DOUB Y N 6 XA2 C18 C17 DOUB Y N 7 XA2 C16 C17 SING Y N 8 XA2 C16 C15 SING N N 9 XA2 C15 N14 SING N N 10 XA2 C13 N14 SING N N 11 XA2 C13 C12 SING N N 12 XA2 N14 C24 SING N N 13 XA2 C12 C11 SING N N 14 XA2 C24 C25 SING N N 15 XA2 O27 C26 DOUB N N 16 XA2 C11 C25 SING N N 17 XA2 C11 C09 SING N N 18 XA2 C26 O28 SING N N 19 XA2 C26 C09 SING N N 20 XA2 C09 N10 SING N N 21 XA2 C09 C08 SING N N 22 XA2 C08 C07 SING N N 23 XA2 C07 C06 SING N N 24 XA2 C06 C05 SING N N 25 XA2 C05 B02 SING N N 26 XA2 O04 B02 SING N N 27 XA2 B02 O01 SING N N 28 XA2 B02 O03 SING N N 29 XA2 O01 H1 SING N N 30 XA2 O03 H2 SING N N 31 XA2 O04 H3 SING N N 32 XA2 C05 H4 SING N N 33 XA2 C05 H5 SING N N 34 XA2 C06 H6 SING N N 35 XA2 C06 H7 SING N N 36 XA2 C07 H8 SING N N 37 XA2 C07 H9 SING N N 38 XA2 C08 H10 SING N N 39 XA2 C08 H11 SING N N 40 XA2 N10 H12 SING N N 41 XA2 N10 H13 SING N N 42 XA2 C11 H15 SING N N 43 XA2 C12 H16 SING N N 44 XA2 C12 H17 SING N N 45 XA2 C13 H18 SING N N 46 XA2 C13 H19 SING N N 47 XA2 C15 H21 SING N N 48 XA2 C15 H22 SING N N 49 XA2 C17 H23 SING N N 50 XA2 C18 H24 SING N N 51 XA2 C23 H25 SING N N 52 XA2 C24 H26 SING N N 53 XA2 C24 H27 SING N N 54 XA2 C25 H28 SING N N 55 XA2 C25 H29 SING N N 56 XA2 O28 H30 SING N N 57 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor XA2 SMILES ACDLabs 12.01 "O=C(O)C(N)(C2CCN(Cc1cc(Cl)c(Cl)cc1)CC2)CCCC[B-](O)(O)O" XA2 InChI InChI 1.03 "InChI=1S/C18H28BCl2N2O5/c20-15-4-3-13(11-16(15)21)12-23-9-5-14(6-10-23)18(22,17(24)25)7-1-2-8-19(26,27)28/h3-4,11,14,26-28H,1-2,5-10,12,22H2,(H,24,25)/q-1/t18-/m1/s1" XA2 InChIKey InChI 1.03 LYUGMNLZENMUTE-GOSISDBHSA-N XA2 SMILES_CANONICAL CACTVS 3.385 "N[C@](CCCC[B-](O)(O)O)(C1CCN(CC1)Cc2ccc(Cl)c(Cl)c2)C(O)=O" XA2 SMILES CACTVS 3.385 "N[C](CCCC[B-](O)(O)O)(C1CCN(CC1)Cc2ccc(Cl)c(Cl)c2)C(O)=O" XA2 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "[B-](CCCC[C@@](C1CCN(CC1)Cc2ccc(c(c2)Cl)Cl)(C(=O)O)N)(O)(O)O" XA2 SMILES "OpenEye OEToolkits" 1.7.6 "[B-](CCCCC(C1CCN(CC1)Cc2ccc(c(c2)Cl)Cl)(C(=O)O)N)(O)(O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier XA2 "SYSTEMATIC NAME" ACDLabs 12.01 "{(5R)-5-amino-5-carboxy-5-[1-(3,4-dichlorobenzyl)piperidin-4-yl]pentyl}(trihydroxy)borate(1-)" XA2 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "[(5R)-5-azanyl-5-[1-[(3,4-dichlorophenyl)methyl]piperidin-4-yl]-6-oxidanyl-6-oxidanylidene-hexyl]-tris(oxidanyl)boranuide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site XA2 "Create component" 2014-04-16 RCSB XA2 "Initial release" 2014-07-16 RCSB #