data_XA4 # _chem_comp.id XA4 _chem_comp.name "(20R)-10,15,20-trimethyl-2-[(4-methylpiperazin-1-yl)methyl]-18,19,20,21-tetrahydro-15H,17H-12,8-(metheno)pyrazolo[3',4':2,3][1,5,10,12]oxatriazacycloheptadecino[12,11-a]benzimidazol-7(6H)-one" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C30 H38 N8 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-12-07 _chem_comp.pdbx_modified_date 2022-01-14 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 542.675 _chem_comp.one_letter_code ? _chem_comp.three_letter_code XA4 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7KXZ _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal XA4 C18 C1 C 0 1 Y N N -1.763 52.446 -26.847 7.227 -0.855 0.575 C18 XA4 1 XA4 C16 C2 C 0 1 N N N -3.827 49.507 -26.105 5.839 -4.132 -0.062 C16 XA4 2 XA4 C14 C3 C 0 1 N N N -0.563 49.774 -19.410 -0.732 -1.239 0.121 C14 XA4 3 XA4 C13 C4 C 0 1 N N N -2.944 50.408 -18.818 -0.781 -3.436 -1.067 C13 XA4 4 XA4 C12 C5 C 0 1 N N R -1.961 50.159 -19.955 -0.254 -2.001 -1.117 C12 XA4 5 XA4 C10 C6 C 0 1 N N N -3.444 49.534 -21.960 1.798 -3.078 -0.177 C10 XA4 6 XA4 C11 C7 C 0 1 N N N -2.397 49.072 -20.942 1.276 -2.021 -1.151 C11 XA4 7 XA4 N19 N1 N 0 1 Y N N 0.079 54.363 -25.256 5.981 1.894 0.634 N19 XA4 8 XA4 C20 C8 C 0 1 Y N N 0.952 55.166 -24.567 5.444 3.099 0.665 C20 XA4 9 XA4 C21 C9 C 0 1 N N N 1.419 56.471 -25.216 6.330 4.298 0.885 C21 XA4 10 XA4 C22 C10 C 0 1 Y N N 1.422 54.812 -23.274 4.084 3.282 0.498 C22 XA4 11 XA4 C24 C11 C 0 1 N N N 0.821 51.885 -19.332 -0.191 1.195 -0.215 C24 XA4 12 XA4 C26 C12 C 0 1 Y N N 0.606 50.843 -17.281 -2.293 0.607 -0.667 C26 XA4 13 XA4 C27 C13 C 0 1 Y N N 0.319 49.979 -16.212 -3.510 -0.020 -0.897 C27 XA4 14 XA4 C28 C14 C 0 1 Y N N 0.812 50.267 -14.926 -4.590 0.718 -1.338 C28 XA4 15 XA4 C29 C15 C 0 1 N N N 0.476 49.327 -13.765 -5.912 0.040 -1.590 C29 XA4 16 XA4 N30 N2 N 0 1 N N N -0.994 49.466 -13.526 -6.714 0.058 -0.360 N30 XA4 17 XA4 C31 C16 C 0 1 N N N -1.346 50.691 -12.731 -6.094 -0.769 0.685 C31 XA4 18 XA4 C02 C17 C 0 1 N N N 1.378 53.158 -21.314 1.796 2.279 0.112 C02 XA4 19 XA4 C03 C18 C 0 1 Y N N 1.030 53.617 -22.683 3.268 2.165 0.306 C03 XA4 20 XA4 C04 C19 C 0 1 Y N N 0.095 52.817 -23.405 3.864 0.903 0.282 C04 XA4 21 XA4 C05 C20 C 0 1 Y N N -0.373 53.186 -24.712 5.246 0.808 0.443 C05 XA4 22 XA4 C06 C21 C 0 1 Y N N -1.350 52.282 -25.438 5.872 -0.534 0.388 C06 XA4 23 XA4 C07 C22 C 0 1 Y N N -2.128 51.153 -25.072 5.200 -1.717 0.129 C07 XA4 24 XA4 C09 C23 C 0 1 N N N -3.151 50.826 -22.813 3.325 -3.142 -0.253 C09 XA4 25 XA4 C32 C24 C 0 1 N N N -2.764 50.738 -12.168 -6.916 -0.661 1.972 C32 XA4 26 XA4 C34 C25 C 0 1 N N N -4.522 49.543 -11.134 -9.097 -1.079 2.939 C34 XA4 27 XA4 C35 C26 C 0 1 N N N -2.966 48.312 -12.410 -8.914 -0.270 0.663 C35 XA4 28 XA4 C36 C27 C 0 1 N N N -1.544 48.214 -12.939 -8.093 -0.379 -0.623 C36 XA4 29 XA4 C37 C28 C 0 1 Y N N 1.580 51.439 -14.748 -4.463 2.082 -1.549 C37 XA4 30 XA4 C38 C29 C 0 1 Y N N 1.880 52.322 -15.806 -3.258 2.716 -1.319 C38 XA4 31 XA4 C39 C30 C 0 1 Y N N 1.373 51.996 -17.086 -2.164 1.982 -0.877 C39 XA4 32 XA4 N15 N3 N 0 1 Y N N -2.891 50.676 -26.096 6.111 -2.710 0.159 N15 XA4 33 XA4 N17 N4 N 0 1 Y N N -2.681 51.473 -27.221 7.365 -2.147 0.433 N17 XA4 34 XA4 N23 N5 N 0 1 N N N 0.652 52.233 -20.557 1.112 1.097 0.094 N23 XA4 35 XA4 N25 N6 N 0 1 N N N 0.242 50.771 -18.635 -1.053 0.142 -0.241 N25 XA4 36 XA4 N33 N7 N 0 1 N N N -3.108 49.460 -11.469 -8.294 -1.097 1.708 N33 XA4 37 XA4 N40 N8 N 0 1 N N N 1.490 52.649 -18.309 -0.849 2.325 -0.571 N40 XA4 38 XA4 O01 O1 O 0 1 N N N 2.375 53.668 -20.704 1.239 3.354 -0.022 O01 XA4 39 XA4 O08 O2 O 0 1 N N N -2.091 50.584 -23.768 3.871 -1.831 -0.110 O08 XA4 40 XA4 H1 H1 H 0 1 N N N -1.398 53.223 -27.502 8.020 -0.154 0.793 H1 XA4 41 XA4 H2 H2 H 0 1 N N N -4.282 49.409 -27.101 5.629 -4.302 -1.118 H2 XA4 42 XA4 H3 H3 H 0 1 N N N -3.270 48.589 -25.865 6.708 -4.719 0.234 H3 XA4 43 XA4 H4 H4 H 0 1 N N N -4.616 49.664 -25.355 4.977 -4.434 0.533 H4 XA4 44 XA4 H5 H5 H 0 1 N N N -0.708 48.904 -18.753 -1.620 -1.724 0.524 H5 XA4 45 XA4 H6 H6 H 0 1 N N N 0.046 49.481 -20.278 0.057 -1.243 0.874 H6 XA4 46 XA4 H7 H7 H 0 1 N N N -2.553 51.199 -18.161 -1.871 -3.423 -1.046 H7 XA4 47 XA4 H8 H8 H 0 1 N N N -3.913 50.722 -19.233 -0.442 -3.979 -1.949 H8 XA4 48 XA4 H9 H9 H 0 1 N N N -3.076 49.483 -18.238 -0.407 -3.930 -0.170 H9 XA4 49 XA4 H10 H10 H 0 1 N N N -1.851 51.098 -20.517 -0.631 -1.508 -2.013 H10 XA4 50 XA4 H11 H11 H 0 1 N N N -4.376 49.717 -21.405 1.496 -2.817 0.837 H11 XA4 51 XA4 H12 H12 H 0 1 N N N -3.595 48.706 -22.668 1.381 -4.050 -0.440 H12 XA4 52 XA4 H13 H13 H 0 1 N N N -2.820 48.234 -20.368 1.613 -2.259 -2.160 H13 XA4 53 XA4 H14 H14 H 0 1 N N N -1.508 48.729 -21.492 1.658 -1.042 -0.863 H14 XA4 54 XA4 H15 H15 H 0 1 N N N 0.952 56.576 -26.206 6.679 4.674 -0.076 H15 XA4 55 XA4 H16 H16 H 0 1 N N N 1.128 57.321 -24.581 5.766 5.078 1.397 H16 XA4 56 XA4 H17 H17 H 0 1 N N N 2.513 56.454 -25.327 7.186 4.010 1.495 H17 XA4 57 XA4 H18 H18 H 0 1 N N N 2.089 55.477 -22.746 3.658 4.274 0.516 H18 XA4 58 XA4 H19 H19 H 0 1 N N N -0.279 49.095 -16.377 -3.612 -1.082 -0.731 H19 XA4 59 XA4 H20 H20 H 0 1 N N N 0.722 48.289 -14.032 -6.447 0.567 -2.380 H20 XA4 60 XA4 H21 H21 H 0 1 N N N 1.038 49.617 -12.865 -5.738 -0.992 -1.896 H21 XA4 61 XA4 H23 H23 H 0 1 N N N -0.646 50.756 -11.885 -6.067 -1.808 0.358 H23 XA4 62 XA4 H24 H24 H 0 1 N N N -1.214 51.566 -13.385 -5.079 -0.419 0.871 H24 XA4 63 XA4 H25 H25 H 0 1 N N N -0.272 51.906 -22.955 3.265 0.016 0.141 H25 XA4 64 XA4 H26 H26 H 0 1 N N N -2.850 51.642 -22.139 3.701 -3.780 0.547 H26 XA4 65 XA4 H27 H27 H 0 1 N N N -4.064 51.115 -23.354 3.623 -3.556 -1.216 H27 XA4 66 XA4 H28 H28 H 0 1 N N N -2.839 51.570 -11.453 -6.474 -1.296 2.740 H28 XA4 67 XA4 H29 H29 H 0 1 N N N -3.473 50.898 -12.993 -6.921 0.374 2.314 H29 XA4 68 XA4 H30 H30 H 0 1 N N N -4.686 50.379 -10.438 -9.121 -0.066 3.342 H30 XA4 69 XA4 H31 H31 H 0 1 N N N -5.107 49.710 -12.051 -10.112 -1.406 2.715 H31 XA4 70 XA4 H32 H32 H 0 1 N N N -4.842 48.603 -10.661 -8.651 -1.751 3.672 H32 XA4 71 XA4 H33 H33 H 0 1 N N N -3.655 48.452 -13.256 -8.942 0.769 0.990 H33 XA4 72 XA4 H34 H34 H 0 1 N N N -3.218 47.381 -11.882 -9.930 -0.620 0.477 H34 XA4 73 XA4 H35 H35 H 0 1 N N N -1.524 47.437 -13.717 -8.535 0.256 -1.391 H35 XA4 74 XA4 H36 H36 H 0 1 N N N -0.892 47.915 -12.105 -8.088 -1.414 -0.965 H36 XA4 75 XA4 H37 H37 H 0 1 N N N 1.953 51.668 -13.761 -5.311 2.653 -1.896 H37 XA4 76 XA4 H38 H38 H 0 1 N N N 2.472 53.211 -15.646 -3.166 3.779 -1.482 H38 XA4 77 XA4 H22 H22 H 0 1 N N N 1.966 53.516 -18.456 -0.470 3.217 -0.607 H22 XA4 78 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal XA4 N17 C18 DOUB Y N 1 XA4 N17 N15 SING Y N 2 XA4 C18 C06 SING Y N 3 XA4 C16 N15 SING N N 4 XA4 N15 C07 SING Y N 5 XA4 C06 C07 DOUB Y N 6 XA4 C06 C05 SING N N 7 XA4 N19 C05 DOUB Y N 8 XA4 N19 C20 SING Y N 9 XA4 C21 C20 SING N N 10 XA4 C07 O08 SING N N 11 XA4 C05 C04 SING Y N 12 XA4 C20 C22 DOUB Y N 13 XA4 O08 C09 SING N N 14 XA4 C04 C03 DOUB Y N 15 XA4 C22 C03 SING Y N 16 XA4 C09 C10 SING N N 17 XA4 C03 C02 SING N N 18 XA4 C10 C11 SING N N 19 XA4 C02 O01 DOUB N N 20 XA4 C02 N23 SING N N 21 XA4 C11 C12 SING N N 22 XA4 N23 C24 DOUB N N 23 XA4 C12 C14 SING N N 24 XA4 C12 C13 SING N N 25 XA4 C14 N25 SING N N 26 XA4 C24 N25 SING N N 27 XA4 C24 N40 SING N N 28 XA4 N25 C26 SING N N 29 XA4 N40 C39 SING N N 30 XA4 C26 C39 DOUB Y N 31 XA4 C26 C27 SING Y N 32 XA4 C39 C38 SING Y N 33 XA4 C27 C28 DOUB Y N 34 XA4 C38 C37 DOUB Y N 35 XA4 C28 C37 SING Y N 36 XA4 C28 C29 SING N N 37 XA4 C29 N30 SING N N 38 XA4 N30 C36 SING N N 39 XA4 N30 C31 SING N N 40 XA4 C36 C35 SING N N 41 XA4 C31 C32 SING N N 42 XA4 C35 N33 SING N N 43 XA4 C32 N33 SING N N 44 XA4 N33 C34 SING N N 45 XA4 C18 H1 SING N N 46 XA4 C16 H2 SING N N 47 XA4 C16 H3 SING N N 48 XA4 C16 H4 SING N N 49 XA4 C14 H5 SING N N 50 XA4 C14 H6 SING N N 51 XA4 C13 H7 SING N N 52 XA4 C13 H8 SING N N 53 XA4 C13 H9 SING N N 54 XA4 C12 H10 SING N N 55 XA4 C10 H11 SING N N 56 XA4 C10 H12 SING N N 57 XA4 C11 H13 SING N N 58 XA4 C11 H14 SING N N 59 XA4 C21 H15 SING N N 60 XA4 C21 H16 SING N N 61 XA4 C21 H17 SING N N 62 XA4 C22 H18 SING N N 63 XA4 C27 H19 SING N N 64 XA4 C29 H20 SING N N 65 XA4 C29 H21 SING N N 66 XA4 C31 H23 SING N N 67 XA4 C31 H24 SING N N 68 XA4 C04 H25 SING N N 69 XA4 C09 H26 SING N N 70 XA4 C09 H27 SING N N 71 XA4 C32 H28 SING N N 72 XA4 C32 H29 SING N N 73 XA4 C34 H30 SING N N 74 XA4 C34 H31 SING N N 75 XA4 C34 H32 SING N N 76 XA4 C35 H33 SING N N 77 XA4 C35 H34 SING N N 78 XA4 C36 H35 SING N N 79 XA4 C36 H36 SING N N 80 XA4 C37 H37 SING N N 81 XA4 C38 H38 SING N N 82 XA4 N40 H22 SING N N 83 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor XA4 SMILES ACDLabs 12.01 "c2c1c6nc(cc(C(=O)N=C5N(CC(C)CCCOc1n(C)n2)c3c(ccc(c3)CN4CCN(CC4)C)N5)c6)C" XA4 InChI InChI 1.03 "InChI=1S/C30H38N8O2/c1-20-6-5-13-40-29-24(17-31-36(29)4)26-16-23(14-21(2)32-26)28(39)34-30-33-25-8-7-22(15-27(25)38(30)18-20)19-37-11-9-35(3)10-12-37/h7-8,14-17,20H,5-6,9-13,18-19H2,1-4H3,(H,33,34,39)/t20-/m1/s1" XA4 InChIKey InChI 1.03 AIQBYZOTCIQTGW-HXUWFJFHSA-N XA4 SMILES_CANONICAL CACTVS 3.385 "C[C@@H]1CCCOc2n(C)ncc2c3cc(cc(C)n3)C(=O)N=C4Nc5ccc(CN6CCN(C)CC6)cc5N4C1" XA4 SMILES CACTVS 3.385 "C[CH]1CCCOc2n(C)ncc2c3cc(cc(C)n3)C(=O)N=C4Nc5ccc(CN6CCN(C)CC6)cc5N4C1" XA4 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1cc2cc(n1)-c3cnn(c3OCCC[C@H](CN\4c5cc(ccc5N/C4=N\C2=O)CN6CCN(CC6)C)C)C" XA4 SMILES "OpenEye OEToolkits" 2.0.7 "Cc1cc2cc(n1)-c3cnn(c3OCCCC(CN4c5cc(ccc5NC4=NC2=O)CN6CCN(CC6)C)C)C" # _pdbx_chem_comp_identifier.comp_id XA4 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program ACDLabs _pdbx_chem_comp_identifier.program_version 12.01 _pdbx_chem_comp_identifier.identifier "(5aE,20R)-10,15,20-trimethyl-2-[(4-methylpiperazin-1-yl)methyl]-18,19,20,21-tetrahydro-15H,17H-12,8-(metheno)pyrazolo[3',4':2,3][1,5,10,12]oxatriazacycloheptadecino[12,11-a]benzimidazol-7(5H)-one" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site XA4 "Create component" 2020-12-07 RCSB XA4 "Initial release" 2022-01-19 RCSB ##