data_XA5 # _chem_comp.id XA5 _chem_comp.name "N,N'-di(acridin-9-yl)butane-1,4-diamine" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C30 H26 N4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-10-25 _chem_comp.pdbx_modified_date 2024-08-02 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 442.554 _chem_comp.one_letter_code ? _chem_comp.three_letter_code XA5 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8WQ7 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal XA5 C1 C1 C 0 1 Y N N N N N -10.456 -28.195 -15.024 6.280 3.544 -0.238 C1 XA5 1 XA5 C2 C2 C 0 1 Y N N N N N -10.093 -28.155 -13.678 4.982 3.597 0.268 C2 XA5 2 XA5 C3 C3 C 0 1 Y N N N N N -10.207 -26.965 -12.965 4.290 2.456 0.534 C3 XA5 3 XA5 C4 C4 C 0 1 Y N N N N N -10.696 -25.786 -13.599 4.888 1.207 0.296 C4 XA5 4 XA5 C5 C5 C 0 1 Y N N N N N -11.054 -25.830 -14.918 6.209 1.149 -0.221 C5 XA5 5 XA5 C7 C6 C 0 1 Y N N N N N -11.661 -23.528 -14.903 6.182 -1.179 -0.218 C7 XA5 6 XA5 C9 C7 C 0 1 Y N N N N N -10.823 -24.559 -12.859 4.195 0.010 0.562 C9 XA5 7 XA5 C11 C8 C 0 1 Y N N N N N -11.973 -21.033 -13.664 4.896 -3.596 0.276 C11 XA5 8 XA5 CAI C9 C 0 1 Y N N N N N -6.337 -23.999 -2.346 -6.194 3.576 0.232 CAI XA5 9 XA5 CAJ C10 C 0 1 Y N N N N N -6.426 -24.390 -3.682 -4.895 3.596 -0.275 CAJ XA5 10 XA5 CAK C11 C 0 1 Y N N N N N -7.633 -24.272 -4.367 -4.231 2.438 -0.539 CAK XA5 11 XA5 CAL C12 C 0 1 Y N N N N N -8.787 -23.759 -3.712 -4.859 1.205 -0.297 CAL XA5 12 XA5 CAM C13 C 0 1 Y N N N N N -8.698 -23.375 -2.398 -6.182 1.179 0.219 CAM XA5 13 XA5 CAN C14 C 0 1 Y N N N N N -7.461 -23.492 -1.694 -6.834 2.402 0.478 CAN XA5 14 XA5 CAO C15 C 0 1 Y N N N N N -10.992 -22.733 -2.335 -6.210 -1.149 0.221 CAO XA5 15 XA5 CAP C16 C 0 1 Y N N N N N -11.155 -23.093 -3.647 -4.888 -1.207 -0.295 CAP XA5 16 XA5 CAQ C17 C 0 1 Y N N N N N -10.049 -23.613 -4.398 -4.195 -0.010 -0.561 CAQ XA5 17 XA5 CAR C18 C 0 1 Y N N N N N -12.423 -22.945 -4.273 -4.290 -2.456 -0.535 CAR XA5 18 XA5 CAS C19 C 0 1 Y N N N N N -13.495 -22.438 -3.547 -4.983 -3.597 -0.271 CAS XA5 19 XA5 CAU C20 C 0 1 Y N N N N N -13.327 -22.062 -2.209 -6.281 -3.545 0.236 CAU XA5 20 XA5 CAV C21 C 0 1 Y N N N N N -12.090 -22.207 -1.593 -6.892 -2.355 0.481 CAV XA5 21 XA5 CBB C22 C 0 1 N N N N N N -9.730 -23.416 -6.966 -1.923 0.091 0.017 CBB XA5 22 XA5 CBC C23 C 0 1 N N N N N N -10.729 -23.642 -8.101 -0.515 -0.061 -0.562 CBC XA5 23 XA5 CBD C24 C 0 1 N N N N N N -10.131 -24.325 -9.322 0.515 0.060 0.563 CBD XA5 24 XA5 NAA N1 N 0 1 Y N N N N N -9.780 -22.873 -1.728 -6.798 0.023 0.456 NAA XA5 25 XA5 NAB N2 N 0 1 N N N N N N -10.282 -24.011 -5.772 -2.912 -0.025 -1.063 NAB XA5 26 XA5 C6 C25 C 0 1 Y N N N N N -10.937 -27.049 -15.656 6.890 2.355 -0.487 C6 XA5 27 XA5 C8 C26 C 0 1 Y N N N N N -11.327 -23.402 -13.573 4.859 -1.205 0.298 C8 XA5 28 XA5 C10 C27 C 0 1 Y N N N N N -11.483 -22.124 -12.952 4.231 -2.439 0.540 C10 XA5 29 XA5 C12 C28 C 0 1 Y N N N N N -12.317 -21.179 -15.013 6.196 -3.576 -0.230 C12 XA5 30 XA5 C13 C29 C 0 1 Y N N N N N -12.161 -22.412 -15.637 6.835 -2.402 -0.477 C13 XA5 31 XA5 C14 C30 C 0 1 N N N N N N -11.168 -24.029 -10.351 1.923 -0.091 -0.016 C14 XA5 32 XA5 N1 N3 N 0 1 Y N N N N N -11.529 -24.719 -15.553 6.798 -0.023 -0.455 N1 XA5 33 XA5 N2 N4 N 0 1 N N N N N N -10.409 -24.563 -11.463 2.912 0.025 1.064 N2 XA5 34 XA5 H1 H1 H 0 1 N N N N N N -10.364 -29.117 -15.579 6.809 4.464 -0.441 H1 XA5 35 XA5 H2 H2 H 0 1 N N N N N N -9.724 -29.045 -13.190 4.520 4.556 0.452 H2 XA5 36 XA5 H3 H3 H 0 1 N N N N N N -9.923 -26.935 -11.924 3.285 2.511 0.927 H3 XA5 37 XA5 H4 H4 H 0 1 N N N N N N -12.088 -20.076 -13.177 4.412 -4.543 0.463 H4 XA5 38 XA5 H5 H5 H 0 1 N N N N N N -5.399 -24.089 -1.817 -6.699 4.509 0.437 H5 XA5 39 XA5 H6 H6 H 0 1 N N N N N N -5.557 -24.785 -4.187 -4.411 4.543 -0.462 H6 XA5 40 XA5 H7 H7 H 0 1 N N N N N N -7.693 -24.572 -5.403 -3.225 2.467 -0.932 H7 XA5 41 XA5 H8 H8 H 0 1 N N N N N N -7.396 -23.189 -0.659 -7.839 2.406 0.875 H8 XA5 42 XA5 H9 H9 H 0 1 N N N N N N -12.553 -23.225 -5.308 -3.285 -2.510 -0.928 H9 XA5 43 XA5 H10 H10 H 0 1 N N N N N N -14.462 -22.334 -4.017 -4.521 -4.556 -0.456 H10 XA5 44 XA5 H11 H11 H 0 1 N N N N N N -14.161 -21.658 -1.654 -6.810 -4.464 0.437 H11 XA5 45 XA5 H12 H12 H 0 1 N N N N N N -11.961 -21.923 -0.559 -7.898 -2.335 0.874 H12 XA5 46 XA5 H13 H13 H 0 1 N N N N N N -8.769 -23.892 -7.212 -2.098 -0.692 0.756 H13 XA5 47 XA5 H14 H14 H 0 1 N N N N N N -9.576 -22.338 -6.811 -2.017 1.067 0.493 H14 XA5 48 XA5 H15 H15 H 0 1 N N N N N N -11.128 -22.665 -8.411 -0.421 -1.037 -1.038 H15 XA5 49 XA5 H16 H16 H 0 1 N N N N N N -11.549 -24.269 -7.721 -0.340 0.722 -1.301 H16 XA5 50 XA5 H17 H17 H 0 1 N N N N N N -10.017 -25.408 -9.164 0.421 1.037 1.038 H17 XA5 51 XA5 H18 H18 H 0 1 N N N N N N -9.158 -23.889 -9.592 0.340 -0.722 1.301 H18 XA5 52 XA5 H19 H19 H 0 1 N N N N N N -11.273 -23.949 -5.891 -2.783 0.702 -1.750 H19 XA5 53 XA5 H20 H20 H 0 1 N N N N N N -11.220 -27.082 -16.698 7.896 2.334 -0.880 H20 XA5 54 XA5 H21 H21 H 0 1 N N N N N N -11.216 -22.003 -11.913 3.226 -2.468 0.932 H21 XA5 55 XA5 H22 H22 H 0 1 N N N N N N -12.703 -20.336 -15.568 6.702 -4.508 -0.431 H22 XA5 56 XA5 H23 H23 H 0 1 N N N N N N -12.419 -22.525 -16.680 7.841 -2.405 -0.869 H23 XA5 57 XA5 H24 H24 H 0 1 N N N N N N -11.376 -22.954 -10.452 2.017 -1.067 -0.492 H24 XA5 58 XA5 H25 H25 H 0 1 N N N N N N -12.110 -24.570 -10.177 2.098 0.692 -0.755 H25 XA5 59 XA5 H26 H26 H 0 1 N N N N N N -10.254 -25.525 -11.238 2.783 -0.702 1.751 H26 XA5 60 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal XA5 C6 C1 DOUB Y N 1 XA5 C6 C5 SING Y N 2 XA5 C13 C12 DOUB Y N 3 XA5 C13 C7 SING Y N 4 XA5 N1 C5 DOUB Y N 5 XA5 N1 C7 SING Y N 6 XA5 C1 C2 SING Y N 7 XA5 C12 C11 SING Y N 8 XA5 C5 C4 SING Y N 9 XA5 C7 C8 DOUB Y N 10 XA5 C2 C3 DOUB Y N 11 XA5 C11 C10 DOUB Y N 12 XA5 C4 C3 SING Y N 13 XA5 C4 C9 DOUB Y N 14 XA5 C8 C10 SING Y N 15 XA5 C8 C9 SING Y N 16 XA5 C9 N2 SING N N 17 XA5 N2 C14 SING N N 18 XA5 C14 CBD SING N N 19 XA5 CBD CBC SING N N 20 XA5 CBC CBB SING N N 21 XA5 CBB NAB SING N N 22 XA5 NAB CAQ SING N N 23 XA5 CAQ CAL DOUB Y N 24 XA5 CAQ CAP SING Y N 25 XA5 CAK CAL SING Y N 26 XA5 CAK CAJ DOUB Y N 27 XA5 CAR CAP DOUB Y N 28 XA5 CAR CAS SING Y N 29 XA5 CAL CAM SING Y N 30 XA5 CAJ CAI SING Y N 31 XA5 CAP CAO SING Y N 32 XA5 CAS CAU DOUB Y N 33 XA5 CAM NAA DOUB Y N 34 XA5 CAM CAN SING Y N 35 XA5 CAI CAN DOUB Y N 36 XA5 CAO NAA SING Y N 37 XA5 CAO CAV DOUB Y N 38 XA5 CAU CAV SING Y N 39 XA5 C1 H1 SING N N 40 XA5 C2 H2 SING N N 41 XA5 C3 H3 SING N N 42 XA5 C11 H4 SING N N 43 XA5 CAI H5 SING N N 44 XA5 CAJ H6 SING N N 45 XA5 CAK H7 SING N N 46 XA5 CAN H8 SING N N 47 XA5 CAR H9 SING N N 48 XA5 CAS H10 SING N N 49 XA5 CAU H11 SING N N 50 XA5 CAV H12 SING N N 51 XA5 CBB H13 SING N N 52 XA5 CBB H14 SING N N 53 XA5 CBC H15 SING N N 54 XA5 CBC H16 SING N N 55 XA5 CBD H17 SING N N 56 XA5 CBD H18 SING N N 57 XA5 NAB H19 SING N N 58 XA5 C6 H20 SING N N 59 XA5 C10 H21 SING N N 60 XA5 C12 H22 SING N N 61 XA5 C13 H23 SING N N 62 XA5 C14 H24 SING N N 63 XA5 C14 H25 SING N N 64 XA5 N2 H26 SING N N 65 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor XA5 InChI InChI 1.06 "InChI=1S/C30H26N4/c1-5-15-25-21(11-1)29(22-12-2-6-16-26(22)33-25)31-19-9-10-20-32-30-23-13-3-7-17-27(23)34-28-18-8-4-14-24(28)30/h1-8,11-18H,9-10,19-20H2,(H,31,33)(H,32,34)" XA5 InChIKey InChI 1.06 MKFRLGCMWOIRSO-UHFFFAOYSA-N XA5 SMILES_CANONICAL CACTVS 3.385 "C(CCNc1c2ccccc2nc3ccccc13)CNc4c5ccccc5nc6ccccc46" XA5 SMILES CACTVS 3.385 "C(CCNc1c2ccccc2nc3ccccc13)CNc4c5ccccc5nc6ccccc46" XA5 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc2c(c1)c(c3ccccc3n2)NCCCCNc4c5ccccc5nc6c4cccc6" XA5 SMILES "OpenEye OEToolkits" 2.0.7 "c1ccc2c(c1)c(c3ccccc3n2)NCCCCNc4c5ccccc5nc6c4cccc6" # _pdbx_chem_comp_identifier.comp_id XA5 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "~{N},~{N}'-di(acridin-9-yl)butane-1,4-diamine" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site XA5 "Create component" 2023-10-25 PDBJ XA5 "Initial release" 2024-08-07 RCSB #