data_XA6 # _chem_comp.id XA6 _chem_comp.name "(2S)-3-(4-aminocarbonylphenyl)-2-azanyl-propanoic acid" _chem_comp.type "L-peptide linking" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C10 H12 N2 O3" _chem_comp.mon_nstd_parent_comp_id PHE _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-04-01 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 208.214 _chem_comp.one_letter_code F _chem_comp.three_letter_code XA6 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7EHZ _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal XA6 N N N 0 1 N N N Y Y N -17.548 -7.561 21.812 -2.162 -1.407 0.907 N XA6 1 XA6 CA CA C 0 1 N N S Y N N -16.299 -7.124 21.204 -2.430 -0.041 0.437 CA XA6 2 XA6 CB CB C 0 1 N N N N N N -16.575 -6.397 19.903 -1.658 0.213 -0.859 CB XA6 3 XA6 CG CG C 0 1 Y N N N N N -17.290 -7.328 18.969 -0.178 0.170 -0.579 CG XA6 4 XA6 CD1 CD1 C 0 1 Y N N N N N -18.635 -7.041 18.661 0.508 -1.027 -0.676 CD1 XA6 5 XA6 CE1 CE1 C 0 1 Y N N N N N -19.326 -7.910 17.811 1.863 -1.073 -0.421 CE1 XA6 6 XA6 CD2 CD2 C 0 1 Y N N N N N -16.635 -8.490 18.467 0.491 1.331 -0.231 CD2 XA6 7 XA6 CE2 CE2 C 0 1 Y N N N N N -17.333 -9.364 17.614 1.845 1.299 0.026 CE2 XA6 8 XA6 CZ1 CZ1 C 0 1 Y N N N N N -18.676 -9.054 17.296 2.542 0.093 -0.064 CZ1 XA6 9 XA6 CH CH C 0 1 N N N N N N -19.413 -9.956 16.355 3.994 0.052 0.210 CH XA6 10 XA6 OT OT O 0 1 N N N N N N -19.042 -11.125 16.243 4.584 1.070 0.516 OT XA6 11 XA6 NT NT N 0 1 N N N N N N -20.413 -9.443 15.625 4.664 -1.114 0.122 NT XA6 12 XA6 C C C 0 1 N N N Y N Y -15.538 -6.137 22.051 -3.906 0.122 0.182 C XA6 13 XA6 O O O 0 1 N N N Y N Y -14.287 -6.088 21.959 -4.602 -0.852 0.017 O XA6 14 XA6 H H1 H 0 1 N N N Y Y N -17.353 -8.039 22.669 -2.449 -2.088 0.221 H1 XA6 15 XA6 H2 H2 H 0 1 N Y N Y Y N -18.124 -6.765 21.998 -1.189 -1.523 1.146 H2 XA6 16 XA6 HA H4 H 0 1 N N N Y N N -15.658 -7.994 21.000 -2.111 0.674 1.196 H4 XA6 17 XA6 H5 H5 H 0 1 N N N N N N -15.625 -6.077 19.450 -1.911 -0.556 -1.590 H5 XA6 18 XA6 H6 H6 H 0 1 N N N N N N -17.203 -5.516 20.099 -1.925 1.192 -1.256 H6 XA6 19 XA6 H7 H7 H 0 1 N N N N N N -19.121 -6.169 19.073 -0.019 -1.929 -0.951 H7 XA6 20 XA6 H8 H8 H 0 1 N N N N N N -20.354 -7.707 17.549 2.397 -2.008 -0.496 H8 XA6 21 XA6 H9 H9 H 0 1 N N N N N N -15.611 -8.698 18.739 -0.049 2.264 -0.162 H9 XA6 22 XA6 H10 H10 H 0 1 N N N N N N -16.857 -10.247 17.213 2.366 2.206 0.298 H10 XA6 23 XA6 H11 H11 H 0 1 N N N N N N -20.890 -10.015 14.958 4.193 -1.926 -0.122 H11 XA6 24 XA6 H12 H12 H 0 1 N N N N N N -20.683 -8.488 15.748 5.617 -1.141 0.302 H12 XA6 25 XA6 OXT OXT O 0 1 N Y N Y N Y -16.257 -5.324 22.844 -4.448 1.349 0.139 OXT XA6 26 XA6 HXT HXT H 0 1 N Y N Y N Y -15.673 -4.731 23.303 -5.399 1.404 -0.027 H3 XA6 27 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal XA6 NT CH SING N N 1 XA6 OT CH DOUB N N 2 XA6 CH CZ1 SING N N 3 XA6 CZ1 CE2 DOUB Y N 4 XA6 CZ1 CE1 SING Y N 5 XA6 CE2 CD2 SING Y N 6 XA6 CE1 CD1 DOUB Y N 7 XA6 CD2 CG DOUB Y N 8 XA6 CD1 CG SING Y N 9 XA6 CG CB SING N N 10 XA6 CB CA SING N N 11 XA6 CA N SING N N 12 XA6 CA C SING N N 13 XA6 O C DOUB N N 14 XA6 N H SING N N 15 XA6 N H2 SING N N 16 XA6 CA HA SING N N 17 XA6 CB H5 SING N N 18 XA6 CB H6 SING N N 19 XA6 CD1 H7 SING N N 20 XA6 CE1 H8 SING N N 21 XA6 CD2 H9 SING N N 22 XA6 CE2 H10 SING N N 23 XA6 NT H11 SING N N 24 XA6 NT H12 SING N N 25 XA6 C OXT SING N N 26 XA6 OXT HXT SING N N 27 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor XA6 InChI InChI 1.03 "InChI=1S/C10H12N2O3/c11-8(10(14)15)5-6-1-3-7(4-2-6)9(12)13/h1-4,8H,5,11H2,(H2,12,13)(H,14,15)/t8-/m0/s1" XA6 InChIKey InChI 1.03 OZVAXCWACWDNIQ-QMMMGPOBSA-N XA6 SMILES_CANONICAL CACTVS 3.385 "N[C@@H](Cc1ccc(cc1)C(N)=O)C(O)=O" XA6 SMILES CACTVS 3.385 "N[CH](Cc1ccc(cc1)C(N)=O)C(O)=O" XA6 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc(ccc1C[C@@H](C(=O)O)N)C(=O)N" XA6 SMILES "OpenEye OEToolkits" 2.0.7 "c1cc(ccc1CC(C(=O)O)N)C(=O)N" # _pdbx_chem_comp_identifier.comp_id XA6 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{S})-3-(4-aminocarbonylphenyl)-2-azanyl-propanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site XA6 "Create component" 2021-04-01 PDBJ XA6 "Initial release" 2021-12-15 RCSB XA6 "Modify backbone" 2023-11-03 PDBE XA6 "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id XA6 _pdbx_chem_comp_pcm.modified_residue_id PHE _pdbx_chem_comp_pcm.type Carbamoylation _pdbx_chem_comp_pcm.category "Named protein modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom ? _pdbx_chem_comp_pcm.modified_residue_id_linking_atom ? _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #