data_XAH # _chem_comp.id XAH _chem_comp.name "5'-O-{(R)-hydroxy[(L-lysylamino)oxy]phosphoryl}adenosine" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C16 H27 N8 O8 P" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2008-08-27 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 490.408 _chem_comp.one_letter_code ? _chem_comp.three_letter_code XAH _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3E9I _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal XAH N1 N1 N 0 1 N N N 64.203 -73.443 18.172 11.679 1.136 0.319 N1 XAH 1 XAH C2 C2 C 0 1 N N N 63.437 -74.570 17.620 10.767 0.013 0.572 C2 XAH 2 XAH C3 C3 C 0 1 N N N 62.355 -75.002 18.614 9.407 0.306 -0.066 C3 XAH 3 XAH C4 C4 C 0 1 N N N 62.954 -75.559 19.908 8.457 -0.863 0.197 C4 XAH 4 XAH C5 C5 C 0 1 N N N 61.865 -75.939 20.916 7.098 -0.570 -0.441 C5 XAH 5 XAH C6 C6 C 0 1 N N S 61.123 -74.701 21.426 6.148 -1.740 -0.178 C6 XAH 6 XAH N7 N7 N 0 1 N N N 62.077 -73.845 22.145 6.647 -2.940 -0.862 N7 XAH 7 XAH C8 C8 C 0 1 N N N 59.997 -75.075 22.393 4.775 -1.399 -0.699 C8 XAH 8 XAH O9 O9 O 0 1 N N N 59.969 -74.590 23.521 4.409 -1.832 -1.771 O9 XAH 9 XAH N10 N10 N 0 1 N N N 59.087 -75.945 21.962 3.955 -0.613 0.027 N10 XAH 10 XAH O11 O11 O 0 1 N N N 58.085 -76.249 22.832 2.665 -0.293 -0.463 O11 XAH 11 XAH P12 P12 P 0 1 N N R 57.080 -77.379 22.284 1.809 0.653 0.519 P12 XAH 12 XAH O13 O13 O 0 1 N N N 55.753 -77.085 22.869 1.609 -0.085 1.936 O13 XAH 13 XAH O14 O14 O 0 1 N N N 57.195 -77.499 20.814 2.527 1.930 0.724 O14 XAH 14 XAH O15 O15 O 0 1 N N N 57.665 -78.712 22.973 0.369 0.947 -0.141 O15 XAH 15 XAH C16 C16 C 0 1 N N N 58.586 -79.558 22.279 -0.584 1.840 0.438 C16 XAH 16 XAH C17 C17 C 0 1 N N R 58.274 -81.020 22.602 -1.837 1.887 -0.439 C17 XAH 17 XAH O18 O18 O 0 1 N N N 58.394 -81.290 24.008 -2.499 0.612 -0.414 O18 XAH 18 XAH C19 C19 C 0 1 N N S 56.809 -81.307 22.278 -2.827 2.928 0.118 C19 XAH 19 XAH O20 O20 O 0 1 N N N 56.700 -81.585 20.879 -3.083 3.945 -0.854 O20 XAH 20 XAH C21 C21 C 0 1 N N R 56.631 -82.595 23.079 -4.113 2.115 0.401 C21 XAH 21 XAH O22 O22 O 0 1 N N N 57.269 -83.689 22.413 -5.277 2.848 0.013 O22 XAH 22 XAH C23 C23 C 0 1 N N R 57.393 -82.262 24.365 -3.916 0.871 -0.502 C23 XAH 23 XAH N24 N24 N 0 1 Y N N 56.542 -81.638 25.405 -4.682 -0.267 0.013 N24 XAH 24 XAH C25 C25 C 0 1 Y N N 56.116 -80.377 25.422 -4.237 -1.204 0.897 C25 XAH 25 XAH N26 N26 N 0 1 Y N N 55.455 -80.141 26.554 -5.177 -2.071 1.137 N26 XAH 26 XAH C27 C27 C 0 1 Y N N 55.457 -81.264 27.266 -6.282 -1.747 0.423 C27 XAH 27 XAH C28 C28 C 0 1 Y N N 56.145 -82.221 26.533 -5.979 -0.582 -0.302 C28 XAH 28 XAH N29 N29 N 0 1 Y N N 56.291 -83.456 27.033 -6.911 -0.049 -1.086 N29 XAH 29 XAH C30 C30 C 0 1 Y N N 55.789 -83.774 28.214 -8.103 -0.599 -1.182 C30 XAH 30 XAH N31 N31 N 0 1 Y N N 55.132 -82.886 28.939 -8.435 -1.691 -0.518 N31 XAH 31 XAH C32 C32 C 0 1 Y N N 54.946 -81.629 28.506 -7.567 -2.300 0.284 C32 XAH 32 XAH N33 N33 N 0 1 N N N 54.301 -80.744 29.262 -7.924 -3.443 0.977 N33 XAH 33 XAH HN1 HN1 H 0 1 N N N 64.377 -73.602 19.144 12.584 0.966 0.731 HN1 XAH 34 XAH HN1A HN1A H 0 0 N N N 65.074 -73.362 17.687 11.760 1.320 -0.669 HN1A XAH 35 XAH H2 H2 H 0 1 N N N 62.962 -74.260 16.677 11.182 -0.897 0.140 H2 XAH 36 XAH H2A H2A H 0 1 N N N 64.117 -75.414 17.435 10.642 -0.120 1.647 H2A XAH 37 XAH H3 H3 H 0 1 N N N 61.736 -74.127 18.861 8.992 1.216 0.367 H3 XAH 38 XAH H3A H3A H 0 1 N N N 61.758 -75.798 18.144 9.531 0.439 -1.141 H3A XAH 39 XAH H4 H4 H 0 1 N N N 63.543 -76.457 19.668 8.873 -1.774 -0.235 H4 XAH 40 XAH H4A H4A H 0 1 N N N 63.585 -74.780 20.360 8.333 -0.996 1.272 H4A XAH 41 XAH H5 H5 H 0 1 N N N 61.144 -76.609 20.425 6.682 0.340 -0.008 H5 XAH 42 XAH H5A H5A H 0 1 N N N 62.342 -76.437 21.773 7.222 -0.438 -1.516 H5A XAH 43 XAH H6 H6 H 0 1 N N N 60.685 -74.184 20.560 6.093 -1.929 0.894 H6 XAH 44 XAH HN7 HN7 H 0 1 N N N 62.861 -73.651 21.556 6.072 -3.742 -0.651 HN7 XAH 45 XAH HN7A HN7A H 0 0 N N N 61.630 -72.987 22.398 6.707 -2.790 -1.858 HN7A XAH 46 XAH HN10 HN10 H 0 0 N N N 59.136 -76.353 21.050 4.248 -0.267 0.884 HN10 XAH 47 XAH HO13 HO13 H 0 0 N N N 55.830 -77.022 23.814 1.144 -0.930 1.877 HO13 XAH 48 XAH H16 H16 H 0 1 N N N 58.492 -79.393 21.196 -0.851 1.490 1.435 H16 XAH 49 XAH H16A H16A H 0 0 N N N 59.613 -79.322 22.596 -0.151 2.838 0.507 H16A XAH 50 XAH H17 H17 H 0 1 N N N 58.980 -81.630 22.018 -1.563 2.143 -1.463 H17 XAH 51 XAH H19 H19 H 0 1 N N N 56.088 -80.508 22.505 -2.441 3.368 1.037 H19 XAH 52 XAH HO20 HO20 H 0 0 N N N 56.676 -80.768 20.394 -3.700 4.627 -0.556 HO20 XAH 53 XAH H21 H21 H 0 1 N N N 55.581 -82.888 23.228 -4.169 1.828 1.451 H21 XAH 54 XAH HO22 HO22 H 0 0 N N N 57.410 -83.466 21.500 -5.393 3.681 0.489 HO22 XAH 55 XAH H23 H23 H 0 1 N N N 57.795 -83.200 24.777 -4.203 1.094 -1.530 H23 XAH 56 XAH H25 H25 H 0 1 N N N 56.281 -79.654 24.637 -3.250 -1.225 1.334 H25 XAH 57 XAH H30 H30 H 0 1 N N N 55.918 -84.777 28.593 -8.837 -0.140 -1.828 H30 XAH 58 XAH HN33 HN33 H 0 0 N N N 54.139 -81.134 30.168 -7.286 -3.872 1.568 HN33 XAH 59 XAH HN3A HN3A H 0 0 N N N 54.854 -79.915 29.350 -8.814 -3.815 0.873 HN3A XAH 60 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal XAH N1 C2 SING N N 1 XAH C2 C3 SING N N 2 XAH C3 C4 SING N N 3 XAH C4 C5 SING N N 4 XAH C5 C6 SING N N 5 XAH C6 N7 SING N N 6 XAH C6 C8 SING N N 7 XAH C8 O9 DOUB N N 8 XAH C8 N10 SING N N 9 XAH N10 O11 SING N N 10 XAH O11 P12 SING N N 11 XAH P12 O13 SING N N 12 XAH P12 O14 DOUB N N 13 XAH P12 O15 SING N N 14 XAH O15 C16 SING N N 15 XAH C16 C17 SING N N 16 XAH C17 O18 SING N N 17 XAH C17 C19 SING N N 18 XAH O18 C23 SING N N 19 XAH C19 O20 SING N N 20 XAH C19 C21 SING N N 21 XAH C21 O22 SING N N 22 XAH C21 C23 SING N N 23 XAH C23 N24 SING N N 24 XAH N24 C25 SING Y N 25 XAH N24 C28 SING Y N 26 XAH C25 N26 DOUB Y N 27 XAH N26 C27 SING Y N 28 XAH C27 C28 DOUB Y N 29 XAH C27 C32 SING Y N 30 XAH C28 N29 SING Y N 31 XAH N29 C30 DOUB Y N 32 XAH C30 N31 SING Y N 33 XAH N31 C32 DOUB Y N 34 XAH C32 N33 SING N N 35 XAH N1 HN1 SING N N 36 XAH N1 HN1A SING N N 37 XAH C2 H2 SING N N 38 XAH C2 H2A SING N N 39 XAH C3 H3 SING N N 40 XAH C3 H3A SING N N 41 XAH C4 H4 SING N N 42 XAH C4 H4A SING N N 43 XAH C5 H5 SING N N 44 XAH C5 H5A SING N N 45 XAH C6 H6 SING N N 46 XAH N7 HN7 SING N N 47 XAH N7 HN7A SING N N 48 XAH N10 HN10 SING N N 49 XAH O13 HO13 SING N N 50 XAH C16 H16 SING N N 51 XAH C16 H16A SING N N 52 XAH C17 H17 SING N N 53 XAH C19 H19 SING N N 54 XAH O20 HO20 SING N N 55 XAH C21 H21 SING N N 56 XAH O22 HO22 SING N N 57 XAH C23 H23 SING N N 58 XAH C25 H25 SING N N 59 XAH C30 H30 SING N N 60 XAH N33 HN33 SING N N 61 XAH N33 HN3A SING N N 62 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor XAH SMILES ACDLabs 10.04 "O=P(O)(ONC(=O)C(N)CCCCN)OCC3OC(n2cnc1c(ncnc12)N)C(O)C3O" XAH SMILES_CANONICAL CACTVS 3.341 "NCCCC[C@H](N)C(=O)NO[P@@](O)(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1O)n2cnc3c(N)ncnc23" XAH SMILES CACTVS 3.341 "NCCCC[CH](N)C(=O)NO[P](O)(=O)OC[CH]1O[CH]([CH](O)[CH]1O)n2cnc3c(N)ncnc23" XAH SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)CO[P@@](=O)(O)ONC(=O)[C@H](CCCCN)N)O)O)N" XAH SMILES "OpenEye OEToolkits" 1.5.0 "c1nc(c2c(n1)n(cn2)C3C(C(C(O3)COP(=O)(O)ONC(=O)C(CCCCN)N)O)O)N" XAH InChI InChI 1.03 "InChI=1S/C16H27N8O8P/c17-4-2-1-3-8(18)15(27)23-32-33(28,29)30-5-9-11(25)12(26)16(31-9)24-7-22-10-13(19)20-6-21-14(10)24/h6-9,11-12,16,25-26H,1-5,17-18H2,(H,23,27)(H,28,29)(H2,19,20,21)/t8-,9+,11+,12+,16+/m0/s1" XAH InChIKey InChI 1.03 UZJSLDPAROCUBS-LEJQEAHTSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier XAH "SYSTEMATIC NAME" ACDLabs 10.04 "5'-O-{(R)-hydroxy[(L-lysylamino)oxy]phosphoryl}adenosine" XAH "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-dihydroxy-oxolan-2-yl]methyl [[(2S)-2,6-diaminohexanoyl]amino] hydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site XAH "Create component" 2008-08-27 PDBJ XAH "Modify aromatic_flag" 2011-06-04 RCSB XAH "Modify descriptor" 2011-06-04 RCSB #