data_XAR # _chem_comp.id XAR _chem_comp.name "[(1R,4S,6S)-4-(6-AMINO-9H-PURIN-9-YL)-6-HYDROXYCYCLOHEX-2-EN-1-YL]METHYL DIHYDROGEN PHOSPHATE" _chem_comp.type "DNA LINKING" _chem_comp.pdbx_type ATOMN _chem_comp.formula "C12 H16 N5 O5 P" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2007-04-18 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 341.260 _chem_comp.one_letter_code N _chem_comp.three_letter_code XAR _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details "OpenEye OEToolkits" _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal XAR O3P O3P O 0 1 N Y N -5.425 -19.214 -23.413 1.575 -4.820 -2.953 O3P XAR 1 XAR O1P O1P O 0 1 N N N -3.017 -18.859 -23.798 2.947 -3.549 -4.809 O1P XAR 2 XAR P P P 0 1 N N N -3.967 -19.319 -22.783 2.895 -3.988 -3.374 P XAR 3 XAR O2P O2P O 0 1 N N N -3.889 -20.601 -22.045 4.107 -4.953 -2.912 O2P XAR 4 XAR "O5'" O5* O 0 1 N N N -3.999 -18.191 -21.636 2.953 -2.785 -2.290 "O5'" XAR 5 XAR "C5'" C5* C 0 1 N N N -3.451 -16.897 -21.831 2.910 -3.112 -0.914 "C5'" XAR 6 XAR "C4'" C4* C 0 1 N N R -4.379 -15.811 -21.318 2.978 -1.814 -0.107 "C4'" XAR 7 XAR "C3'" C3* C 0 1 N N S -4.461 -15.766 -19.793 3.044 -2.095 1.408 "C3'" XAR 8 XAR "O3'" O3* O 0 1 N N N -4.672 -14.389 -19.492 3.594 -0.946 2.057 "O3'" XAR 9 XAR "C2'" C2* C 0 1 N N N -5.665 -16.546 -19.275 1.665 -2.400 2.000 "C2'" XAR 10 XAR "C1'" C1* C 0 1 N N S -6.970 -15.909 -19.774 0.657 -1.265 1.723 "C1'" XAR 11 XAR "C7'" C7* C 0 1 N N N -6.911 -15.847 -21.282 0.781 -0.674 0.341 "C7'" XAR 12 XAR "C6'" C6* C 0 1 N N N -5.763 -15.824 -21.957 1.809 -0.935 -0.478 "C6'" XAR 13 XAR N9 N9 N 0 1 Y N N -8.131 -16.709 -19.385 -0.722 -1.698 2.012 N9 XAR 14 XAR C8 C8 C 0 1 Y N N -8.188 -18.069 -19.210 -1.541 -1.170 2.968 C8 XAR 15 XAR N7 N7 N 0 1 Y N N -9.378 -18.503 -18.864 -2.715 -1.765 2.991 N7 XAR 16 XAR C5 C5 C 0 1 Y N N -10.155 -17.373 -18.826 -2.647 -2.717 2.005 C5 XAR 17 XAR C4 C4 C 0 1 Y N N -9.418 -16.250 -19.142 -1.409 -2.690 1.383 C4 XAR 18 XAR N3 N3 N 0 1 Y N N -9.874 -14.980 -19.199 -0.988 -3.474 0.379 N3 XAR 19 XAR C6 C6 C 0 1 Y N N -11.507 -17.181 -18.534 -3.562 -3.658 1.545 C6 XAR 20 XAR N6 N6 N 0 1 N N N -12.325 -18.188 -18.241 -4.841 -3.756 2.119 N6 XAR 21 XAR N1 N1 N 0 1 Y N N -11.986 -15.918 -18.560 -3.204 -4.484 0.532 N1 XAR 22 XAR C2 C2 C 0 1 Y N N -11.171 -14.912 -18.887 -1.958 -4.343 0.020 C2 XAR 23 XAR HOP3 3HOP H 0 0 N N N -6.071 -19.193 -22.716 1.287 -5.571 -3.516 HOP3 XAR 24 XAR HOP2 2HOP H 0 0 N N N -3.872 -21.322 -22.663 4.342 -5.722 -3.473 HOP2 XAR 25 XAR "H5'1" 1H5* H 0 0 N N N -2.497 -16.832 -21.288 1.980 -3.634 -0.694 "H5'1" XAR 26 XAR "H5'2" 2H5* H 0 0 N N N -3.306 -16.744 -22.911 3.759 -3.746 -0.665 "H5'2" XAR 27 XAR "H4'" H4* H 0 1 N N N -3.906 -14.873 -21.644 3.892 -1.283 -0.401 "H4'" XAR 28 XAR "H3'" H3* H 0 1 N N N -3.559 -16.200 -19.337 3.727 -2.927 1.610 "H3'" XAR 29 XAR H3T H3T H 0 1 N Y N -4.719 -14.274 -18.550 4.146 -0.501 1.398 H3T XAR 30 XAR "H2'1" 1H2* H 0 0 N N N -5.607 -17.583 -19.638 1.746 -2.540 3.086 "H2'1" XAR 31 XAR "H2'2" 2H2* H 0 0 N N N -5.656 -16.528 -18.175 1.291 -3.345 1.585 "H2'2" XAR 32 XAR "H1'" H1* H 0 1 N N N -7.073 -14.908 -19.331 0.825 -0.455 2.444 "H1'" XAR 33 XAR "H7'" H7* H 0 1 N N N -7.838 -15.820 -21.836 -0.003 -0.004 -0.000 "H7'" XAR 34 XAR "H6'" H6* H 0 1 N N N -5.817 -15.814 -23.036 1.821 -0.481 -1.466 "H6'" XAR 35 XAR H8 H8 H 0 1 N N N -7.336 -18.719 -19.344 -1.233 -0.360 3.616 H8 XAR 36 XAR HN61 1HN6 H 0 0 N N N -11.811 -19.045 -18.268 -5.437 -2.950 2.134 HN61 XAR 37 XAR HN62 2HN6 H 0 0 N N N -13.298 -18.101 -18.028 -5.107 -4.600 2.589 HN62 XAR 38 XAR H2 H2 H 0 1 N N N -11.613 -13.927 -18.901 -1.706 -5.021 -0.789 H2 XAR 39 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal XAR O3P P SING N N 1 XAR O3P HOP3 SING N N 2 XAR O1P P DOUB N N 3 XAR P O2P SING N N 4 XAR P "O5'" SING N N 5 XAR O2P HOP2 SING N N 6 XAR "O5'" "C5'" SING N N 7 XAR "C5'" "C4'" SING N N 8 XAR "C5'" "H5'1" SING N N 9 XAR "C5'" "H5'2" SING N N 10 XAR "C4'" "C6'" SING N N 11 XAR "C4'" "C3'" SING N N 12 XAR "C4'" "H4'" SING N N 13 XAR "C3'" "O3'" SING N N 14 XAR "C3'" "C2'" SING N N 15 XAR "C3'" "H3'" SING N N 16 XAR "O3'" H3T SING N N 17 XAR "C2'" "C1'" SING N N 18 XAR "C2'" "H2'1" SING N N 19 XAR "C2'" "H2'2" SING N N 20 XAR "C1'" "C7'" SING N N 21 XAR "C1'" N9 SING N N 22 XAR "C1'" "H1'" SING N N 23 XAR "C7'" "C6'" DOUB N N 24 XAR "C7'" "H7'" SING N N 25 XAR "C6'" "H6'" SING N N 26 XAR N9 C8 SING Y N 27 XAR N9 C4 SING Y N 28 XAR C8 N7 DOUB Y N 29 XAR C8 H8 SING N N 30 XAR N7 C5 SING Y N 31 XAR C5 C4 DOUB Y N 32 XAR C5 C6 SING Y N 33 XAR C4 N3 SING Y N 34 XAR N3 C2 DOUB Y N 35 XAR C6 N1 DOUB Y N 36 XAR C6 N6 SING N N 37 XAR N6 HN61 SING N N 38 XAR N6 HN62 SING N N 39 XAR N1 C2 SING Y N 40 XAR C2 H2 SING N N 41 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor XAR SMILES ACDLabs 10.04 "O=P(O)(O)OCC3C=CC(n1c2ncnc(c2nc1)N)CC3O" XAR SMILES_CANONICAL CACTVS 3.341 "Nc1ncnc2n(cnc12)[C@H]3C[C@H](O)[C@@H](CO[P](O)(O)=O)C=C3" XAR SMILES CACTVS 3.341 "Nc1ncnc2n(cnc12)[CH]3C[CH](O)[CH](CO[P](O)(O)=O)C=C3" XAR SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "c1nc(c2c(n1)n(cn2)[C@H]3C[C@@H]([C@H](C=C3)COP(=O)(O)O)O)N" XAR SMILES "OpenEye OEToolkits" 1.5.0 "c1nc(c2c(n1)n(cn2)C3CC(C(C=C3)COP(=O)(O)O)O)N" XAR InChI InChI 1.03 "InChI=1S/C12H16N5O5P/c13-11-10-12(15-5-14-11)17(6-16-10)8-2-1-7(9(18)3-8)4-22-23(19,20)21/h1-2,5-9,18H,3-4H2,(H2,13,14,15)(H2,19,20,21)/t7-,8-,9+/m1/s1" XAR InChIKey InChI 1.03 CZNHTUYPRVHNIW-HLTSFMKQSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier XAR "SYSTEMATIC NAME" ACDLabs 10.04 "[(1R,4S,6S)-4-(6-amino-9H-purin-9-yl)-6-hydroxycyclohex-2-en-1-yl]methyl dihydrogen phosphate" XAR "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(1R,4S,6S)-4-(6-aminopurin-9-yl)-6-hydroxy-1-cyclohex-2-enyl]methyl dihydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site XAR "Create component" 2007-04-18 PDBJ XAR "Modify descriptor" 2011-06-04 RCSB #