data_XAT # _chem_comp.id XAT _chem_comp.name "(3S,5R,6S,3'S,5'R,6'S)-5,6,5',6'-DIEPOXY-5,6,5',6'- TETRAHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C40 H56 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms VIOLAXANTHIN _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2003-12-22 _chem_comp.pdbx_modified_date 2020-06-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 600.870 _chem_comp.one_letter_code ? _chem_comp.three_letter_code XAT _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1RWT _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal XAT C1 C1 C 0 1 N N N 64.399 24.059 64.736 -12.124 -1.287 0.306 C1 XAT 1 XAT C2 C2 C 0 1 N N N 63.245 24.887 64.132 -13.571 -1.285 -0.189 C2 XAT 2 XAT C3 C3 C 0 1 N N S 63.510 26.367 63.862 -14.322 -0.141 0.501 C3 XAT 3 XAT C4 C4 C 0 1 N N N 64.695 26.554 62.899 -13.878 1.182 -0.123 C4 XAT 4 XAT C5 C5 C 0 1 N N R 65.928 25.779 63.308 -12.365 1.324 -0.052 C5 XAT 5 XAT C6 C6 C 0 1 N N S 65.818 24.548 64.212 -11.493 0.087 0.093 C6 XAT 6 XAT C7 C7 C 0 1 N N N 66.899 23.521 64.223 -10.162 0.087 -0.613 C7 XAT 7 XAT C8 C8 C 0 1 N N N 67.968 23.591 65.020 -9.029 0.087 0.096 C8 XAT 8 XAT C9 C9 C 0 1 N N N 69.034 22.614 65.185 -7.776 0.087 -0.568 C9 XAT 9 XAT C10 C10 C 0 1 N N N 70.000 22.889 66.087 -6.625 0.086 0.153 C10 XAT 10 XAT C11 C11 C 0 1 N N N 71.079 22.029 66.460 -5.383 0.087 -0.506 C11 XAT 11 XAT C12 C12 C 0 1 N N N 72.018 22.353 67.362 -4.226 0.086 0.218 C12 XAT 12 XAT C13 C13 C 0 1 N N N 73.081 21.465 67.858 -2.987 0.087 -0.439 C13 XAT 13 XAT C14 C14 C 0 1 N N N 73.967 21.969 68.745 -1.821 0.086 0.291 C14 XAT 14 XAT C15 C15 C 0 1 N N N 75.055 21.265 69.356 -0.584 0.087 -0.365 C15 XAT 15 XAT C16 C16 C 0 1 N N N 64.150 22.588 64.379 -11.325 -2.338 -0.467 C16 XAT 16 XAT C17 C17 C 0 1 N N N 64.328 24.214 66.257 -12.100 -1.631 1.797 C17 XAT 17 XAT C18 C18 C 0 1 N N N 67.122 26.013 62.420 -11.786 2.467 -0.888 C18 XAT 18 XAT C19 C19 C 0 1 N N N 68.958 21.352 64.376 -7.722 0.089 -2.075 C19 XAT 19 XAT C20 C20 C 0 1 N N N 73.113 20.045 67.340 -2.933 0.089 -1.945 C20 XAT 20 XAT O3 O3 O 0 1 N N N 62.348 26.989 63.330 -15.729 -0.310 0.315 O3 XAT 21 XAT O4 O4 O 0 1 N N N 66.221 25.841 64.722 -11.678 1.033 1.158 O4 XAT 22 XAT C21 C21 C 0 1 N N N 82.932 16.495 78.119 12.124 -1.287 -0.309 C21 XAT 23 XAT C22 C22 C 0 1 N N N 83.802 15.460 78.860 13.571 -1.286 0.186 C22 XAT 24 XAT C23 C23 C 0 1 N N S 85.317 15.438 78.674 14.322 -0.140 -0.501 C23 XAT 25 XAT C24 C24 C 0 1 N N N 86.036 16.595 77.957 13.878 1.181 0.126 C24 XAT 26 XAT C25 C25 C 0 1 N N R 85.208 17.260 76.888 12.365 1.323 0.055 C25 XAT 27 XAT C26 C26 C 0 1 N N S 83.680 17.230 76.931 11.493 0.086 -0.093 C26 XAT 28 XAT C27 C27 C 0 1 N N N 82.942 18.361 76.269 10.162 0.085 0.613 C27 XAT 29 XAT C28 C28 C 0 1 N N N 82.061 18.304 75.221 9.029 0.086 -0.096 C28 XAT 30 XAT C29 C29 C 0 1 N N N 81.418 19.516 74.645 7.776 0.086 0.569 C29 XAT 31 XAT C30 C30 C 0 1 N N N 80.512 19.383 73.652 6.625 0.086 -0.153 C30 XAT 32 XAT C31 C31 C 0 1 N N N 79.754 20.475 73.087 5.383 0.086 0.507 C31 XAT 33 XAT C32 C32 C 0 1 N N N 78.780 20.326 72.176 4.226 0.087 -0.218 C32 XAT 34 XAT C33 C33 C 0 1 N N N 77.920 21.386 71.614 2.987 0.086 0.439 C33 XAT 35 XAT C34 C34 C 0 1 N N N 76.937 21.006 70.770 1.821 0.087 -0.291 C34 XAT 36 XAT C35 C35 C 0 1 N N N 75.931 21.830 70.174 0.584 0.086 0.366 C35 XAT 37 XAT C36 C36 C 0 1 N N N 82.467 17.497 79.146 11.325 -2.340 0.461 C36 XAT 38 XAT C37 C37 C 0 1 N N N 81.748 15.688 77.583 12.100 -1.627 -1.801 C37 XAT 39 XAT C38 C38 C 0 1 N N N 85.958 18.363 76.175 11.786 2.464 0.894 C38 XAT 40 XAT C39 C39 C 0 1 N N N 81.771 20.836 75.250 7.722 0.084 2.075 C39 XAT 41 XAT C40 C40 C 0 1 N N N 78.149 22.803 72.068 2.933 0.084 1.945 C40 XAT 42 XAT O23 O23 O 0 1 N N N 85.948 15.190 79.922 15.729 -0.310 -0.316 O23 XAT 43 XAT O24 O24 O 0 1 N N N 84.435 16.372 76.040 11.678 1.035 -1.155 O24 XAT 44 XAT H21 1H2 H 0 1 N N N 62.890 24.398 63.194 -13.587 -1.135 -1.269 H21 XAT 45 XAT H22 2H2 H 0 1 N N N 62.340 24.784 64.775 -14.044 -2.235 0.058 H22 XAT 46 XAT H3 H3 H 0 1 N N N 63.770 26.849 64.832 -14.089 -0.139 1.565 H3 XAT 47 XAT H41 1H4 H 0 1 N N N 64.398 26.303 61.853 -14.193 1.211 -1.167 H41 XAT 48 XAT H42 2H4 H 0 1 N N N 64.932 27.635 62.769 -14.342 2.008 0.415 H42 XAT 49 XAT H7 H7 H 0 1 N N N 66.908 22.624 63.580 -10.123 0.089 -1.693 H7 XAT 50 XAT H8 H8 H 0 1 N N N 67.970 24.535 65.590 -9.068 0.085 1.175 H8 XAT 51 XAT H10 H10 H 0 1 N N N 69.900 23.884 66.551 -6.663 0.085 1.232 H10 XAT 52 XAT H11 H11 H 0 1 N N N 71.197 21.027 66.012 -5.344 0.089 -1.586 H11 XAT 53 XAT H12 H12 H 0 1 N N N 71.911 23.394 67.710 -4.265 0.085 1.297 H12 XAT 54 XAT H14 H14 H 0 1 N N N 73.789 23.030 68.987 -1.860 0.085 1.370 H14 XAT 55 XAT H15 H15 H 0 1 N N N 75.234 20.190 69.180 -0.545 0.088 -1.445 H15 XAT 56 XAT H161 1H16 H 0 0 N N N 64.983 21.989 64.815 -11.345 -2.100 -1.530 H161 XAT 57 XAT H162 2H16 H 0 0 N N N 63.144 22.228 64.698 -10.294 -2.342 -0.115 H162 XAT 58 XAT H163 3H16 H 0 0 N N N 64.023 22.422 63.283 -11.767 -3.322 -0.306 H163 XAT 59 XAT H171 1H17 H 0 0 N N N 65.161 23.615 66.693 -12.539 -2.617 1.950 H171 XAT 60 XAT H172 2H17 H 0 0 N N N 64.337 25.279 66.586 -11.069 -1.633 2.152 H172 XAT 61 XAT H173 3H17 H 0 0 N N N 63.331 23.941 66.676 -12.673 -0.888 2.351 H173 XAT 62 XAT H181 1H18 H 0 0 N N N 68.030 25.441 62.721 -12.484 3.304 -0.892 H181 XAT 63 XAT H182 2H18 H 0 0 N N N 66.864 25.805 61.355 -10.837 2.787 -0.458 H182 XAT 64 XAT H183 3H18 H 0 0 N N N 67.349 27.102 62.349 -11.624 2.124 -1.910 H183 XAT 65 XAT H191 1H19 H 0 0 N N N 69.774 20.603 64.502 -7.709 1.117 -2.436 H191 XAT 66 XAT H192 2H19 H 0 0 N N N 67.975 20.857 64.559 -6.820 -0.424 -2.406 H192 XAT 67 XAT H193 3H19 H 0 0 N N N 68.864 21.613 63.296 -8.599 -0.424 -2.470 H193 XAT 68 XAT H201 1H20 H 0 0 N N N 73.918 19.372 67.715 -2.920 1.117 -2.307 H201 XAT 69 XAT H202 2H20 H 0 0 N N N 72.122 19.566 67.520 -2.031 -0.425 -2.277 H202 XAT 70 XAT H203 3H20 H 0 0 N N N 73.139 20.061 66.225 -3.810 -0.424 -2.341 H203 XAT 71 XAT HO3 HO3 H 0 1 N N N 62.512 27.909 63.162 -16.266 0.381 0.727 HO3 XAT 72 XAT H221 1H22 H 0 0 N N N 83.586 15.541 79.950 13.587 -1.138 1.266 H221 XAT 73 XAT H222 2H22 H 0 0 N N N 83.408 14.443 78.626 14.044 -2.236 -0.063 H222 XAT 74 XAT H23 H23 H 0 1 N N N 85.429 14.615 77.930 14.089 -0.136 -1.566 H23 XAT 75 XAT H241 1H24 H 0 0 N N N 86.400 17.347 78.694 14.193 1.208 1.169 H241 XAT 76 XAT H242 2H24 H 0 0 N N N 87.011 16.252 77.540 14.342 2.008 -0.410 H242 XAT 77 XAT H27 H27 H 0 1 N N N 83.067 19.403 76.607 10.123 0.084 1.693 H27 XAT 78 XAT H28 H28 H 0 1 N N N 81.870 17.285 74.842 9.068 0.088 -1.175 H28 XAT 79 XAT H30 H30 H 0 1 N N N 80.387 18.348 73.290 6.663 0.088 -1.232 H30 XAT 80 XAT H31 H31 H 0 1 N N N 79.936 21.522 73.379 5.344 0.084 1.586 H31 XAT 81 XAT H32 H32 H 0 1 N N N 78.680 19.270 71.871 4.265 0.088 -1.297 H32 XAT 82 XAT H34 H34 H 0 1 N N N 76.957 19.925 70.547 1.860 0.088 -1.370 H34 XAT 83 XAT H35 H35 H 0 1 N N N 75.829 22.914 70.347 0.545 0.085 1.445 H35 XAT 84 XAT H361 1H36 H 0 0 N N N 81.837 18.245 78.610 11.345 -2.105 1.525 H361 XAT 85 XAT H362 2H36 H 0 0 N N N 81.945 17.026 80.012 10.293 -2.343 0.109 H362 XAT 86 XAT H363 3H36 H 0 0 N N N 83.305 17.958 79.718 11.767 -3.323 0.298 H363 XAT 87 XAT H371 1H37 H 0 0 N N N 81.118 16.436 77.047 12.539 -2.613 -1.956 H371 XAT 88 XAT H372 2H37 H 0 0 N N N 82.040 14.810 76.960 11.069 -1.629 -2.156 H372 XAT 89 XAT H373 3H37 H 0 0 N N N 81.201 15.109 78.363 12.673 -0.883 -2.353 H373 XAT 90 XAT H381 1H38 H 0 0 N N N 85.345 18.855 75.384 12.484 3.301 0.900 H381 XAT 91 XAT H382 2H38 H 0 0 N N N 86.353 19.112 76.899 10.837 2.786 0.464 H382 XAT 92 XAT H383 3H38 H 0 0 N N N 86.922 17.988 75.759 11.624 2.118 1.915 H383 XAT 93 XAT H391 1H39 H 0 0 N N N 81.289 21.744 74.818 7.709 1.111 2.439 H391 XAT 94 XAT H392 2H39 H 0 0 N N N 81.578 20.802 76.347 6.820 -0.430 2.405 H392 XAT 95 XAT H393 3H39 H 0 0 N N N 82.878 20.963 75.236 8.599 -0.431 2.469 H393 XAT 96 XAT H401 1H40 H 0 0 N N N 77.499 23.603 71.643 2.921 1.111 2.310 H401 XAT 97 XAT H402 2H40 H 0 0 N N N 78.094 22.842 73.181 2.031 -0.430 2.276 H402 XAT 98 XAT H403 3H40 H 0 0 N N N 79.217 23.072 71.897 3.810 -0.430 2.340 H403 XAT 99 XAT H1 H1 H 0 1 N N N 86.890 15.176 79.806 16.266 0.382 -0.726 H1 XAT 100 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal XAT C1 C2 SING N N 1 XAT C1 C6 SING N N 2 XAT C1 C16 SING N N 3 XAT C1 C17 SING N N 4 XAT C2 C3 SING N N 5 XAT C2 H21 SING N N 6 XAT C2 H22 SING N N 7 XAT C3 C4 SING N N 8 XAT C3 O3 SING N N 9 XAT C3 H3 SING N N 10 XAT C4 C5 SING N N 11 XAT C4 H41 SING N N 12 XAT C4 H42 SING N N 13 XAT C5 C6 SING N N 14 XAT C5 C18 SING N N 15 XAT C5 O4 SING N N 16 XAT C6 C7 SING N N 17 XAT C6 O4 SING N N 18 XAT C7 C8 DOUB N E 19 XAT C7 H7 SING N N 20 XAT C8 C9 SING N N 21 XAT C8 H8 SING N N 22 XAT C9 C10 DOUB N E 23 XAT C9 C19 SING N N 24 XAT C10 C11 SING N N 25 XAT C10 H10 SING N N 26 XAT C11 C12 DOUB N E 27 XAT C11 H11 SING N N 28 XAT C12 C13 SING N N 29 XAT C12 H12 SING N N 30 XAT C13 C14 DOUB N E 31 XAT C13 C20 SING N N 32 XAT C14 C15 SING N N 33 XAT C14 H14 SING N N 34 XAT C15 C35 DOUB N E 35 XAT C15 H15 SING N N 36 XAT C16 H161 SING N N 37 XAT C16 H162 SING N N 38 XAT C16 H163 SING N N 39 XAT C17 H171 SING N N 40 XAT C17 H172 SING N N 41 XAT C17 H173 SING N N 42 XAT C18 H181 SING N N 43 XAT C18 H182 SING N N 44 XAT C18 H183 SING N N 45 XAT C19 H191 SING N N 46 XAT C19 H192 SING N N 47 XAT C19 H193 SING N N 48 XAT C20 H201 SING N N 49 XAT C20 H202 SING N N 50 XAT C20 H203 SING N N 51 XAT O3 HO3 SING N N 52 XAT C21 C22 SING N N 53 XAT C21 C26 SING N N 54 XAT C21 C36 SING N N 55 XAT C21 C37 SING N N 56 XAT C22 C23 SING N N 57 XAT C22 H221 SING N N 58 XAT C22 H222 SING N N 59 XAT C23 C24 SING N N 60 XAT C23 O23 SING N N 61 XAT C23 H23 SING N N 62 XAT C24 C25 SING N N 63 XAT C24 H241 SING N N 64 XAT C24 H242 SING N N 65 XAT C25 C26 SING N N 66 XAT C25 C38 SING N N 67 XAT C25 O24 SING N N 68 XAT C26 C27 SING N N 69 XAT C26 O24 SING N N 70 XAT C27 C28 DOUB N E 71 XAT C27 H27 SING N N 72 XAT C28 C29 SING N N 73 XAT C28 H28 SING N N 74 XAT C29 C30 DOUB N E 75 XAT C29 C39 SING N N 76 XAT C30 C31 SING N N 77 XAT C30 H30 SING N N 78 XAT C31 C32 DOUB N E 79 XAT C31 H31 SING N N 80 XAT C32 C33 SING N N 81 XAT C32 H32 SING N N 82 XAT C33 C34 DOUB N E 83 XAT C33 C40 SING N N 84 XAT C34 C35 SING N N 85 XAT C34 H34 SING N N 86 XAT C35 H35 SING N N 87 XAT C36 H361 SING N N 88 XAT C36 H362 SING N N 89 XAT C36 H363 SING N N 90 XAT C37 H371 SING N N 91 XAT C37 H372 SING N N 92 XAT C37 H373 SING N N 93 XAT C38 H381 SING N N 94 XAT C38 H382 SING N N 95 XAT C38 H383 SING N N 96 XAT C39 H391 SING N N 97 XAT C39 H392 SING N N 98 XAT C39 H393 SING N N 99 XAT C40 H401 SING N N 100 XAT C40 H402 SING N N 101 XAT C40 H403 SING N N 102 XAT O23 H1 SING N N 103 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor XAT SMILES ACDLabs 10.04 "OC1CC(C)(C)C2(OC2(C)C1)/C=C/C(=C/C=C/C(=C/C=C/C=C(/C=C/C=C(/C=C/C34OC4(C)CC(O)CC3(C)C)C)C)C)C" XAT InChI InChI 1.03 "InChI=1S/C40H56O4/c1-29(17-13-19-31(3)21-23-39-35(5,6)25-33(41)27-37(39,9)43-39)15-11-12-16-30(2)18-14-20-32(4)22-24-40-36(7,8)26-34(42)28-38(40,10)44-40/h11-24,33-34,41-42H,25-28H2,1-10H3/b12-11+,17-13+,18-14+,23-21+,24-22+,29-15+,30-16+,31-19+,32-20+/t33-,34-,37+,38+,39-,40-/m0/s1" XAT InChIKey InChI 1.03 SZCBXWMUOPQSOX-WVJDLNGLSA-N XAT SMILES_CANONICAL CACTVS 3.385 "CC(=C\C=C\C=C(C)\C=C\C=C(C)\C=C\[C@@]12O[C@]1(C)C[C@@H](O)CC2(C)C)/C=C/C=C(C)/C=C/[C@@]34O[C@]3(C)C[C@@H](O)CC4(C)C" XAT SMILES CACTVS 3.385 "CC(=CC=CC=C(C)C=CC=C(C)C=C[C]12O[C]1(C)C[CH](O)CC2(C)C)C=CC=C(C)C=C[C]34O[C]3(C)C[CH](O)CC4(C)C" XAT SMILES_CANONICAL "OpenEye OEToolkits" 1.7.5 "C/C(=C\C=C\C=C(\C=C\C=C(\C=C\[C@@]12O[C@@]1(C[C@H](CC2(C)C)O)C)/C)/C)/C=C/C=C(/C=C/[C@@]34O[C@@]3(C[C@H](CC4(C)C)O)C)\C" XAT SMILES "OpenEye OEToolkits" 1.7.5 "CC(=CC=CC=C(C)C=CC=C(C)C=CC12C(CC(CC1(O2)C)O)(C)C)C=CC=C(C)C=CC34C(CC(CC3(O4)C)O)(C)C" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier XAT "SYSTEMATIC NAME" ACDLabs 10.04 "(3S,3'S,5R,5'R,6S,6'S)-5,5',6,6'-tetrahydro-5,6:5',6'-diepoxy-beta,beta-carotene-3,3'-diol" XAT "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(1R,3S,6S)-6-[(1E,3E,5E,7E,9E,11E,13E,15E,17E)-18-[(1R,3S,6S)-3-hydroxy-1,5,5-trimethyl-7-oxabicyclo[4.1.0]heptan-6-yl]-3,7,12,16-tetramethyl-octadeca-1,3,5,7,9,11,13,15,17-nonaenyl]-1,5,5-trimethyl-7-oxabicyclo[4.1.0]heptan-3-ol" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site XAT "Create component" 2003-12-22 PDBJ XAT "Modify descriptor" 2011-06-04 RCSB XAT "Modify descriptor" 2012-01-05 RCSB XAT "Modify coordinates" 2012-01-05 RCSB XAT "Modify synonyms" 2020-06-05 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id XAT _pdbx_chem_comp_synonyms.name VIOLAXANTHIN _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##