data_XB1 # _chem_comp.id XB1 _chem_comp.name "N-{3-[(1,3-dimethyl-2,6-dioxo-2,3,6,9-tetrahydro-1H-purin-8-yl)sulfanyl]propyl}-N'-[2-(morpholin-4-yl)ethyl]thiourea" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C17 H27 N7 O3 S2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-12-08 _chem_comp.pdbx_modified_date 2021-02-12 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 441.571 _chem_comp.one_letter_code ? _chem_comp.three_letter_code XB1 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7KXB _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal XB1 C10 C1 C 0 1 N N N 35.450 -36.209 7.814 1.103 0.481 0.085 C10 XB1 1 XB1 C15 C2 C 0 1 N N N 39.070 -39.736 5.199 7.207 0.857 0.185 C15 XB1 2 XB1 C17 C3 C 0 1 N N N 40.647 -38.138 4.392 8.527 -0.841 -0.928 C17 XB1 3 XB1 C20 C4 C 0 1 N N N 39.630 -38.350 1.747 10.816 -0.133 0.620 C20 XB1 4 XB1 C21 C5 C 0 1 N N N 39.217 -39.331 2.868 9.611 0.802 0.479 C21 XB1 5 XB1 C26 C6 C 0 1 N N N 34.618 -29.849 8.481 -8.134 -0.630 -0.032 C26 XB1 6 XB1 C28 C7 C 0 1 N N N 34.953 -28.628 10.549 -8.097 -3.052 0.137 C28 XB1 7 XB1 C02 C8 C 0 1 N N N 33.911 -30.926 10.540 -6.062 -1.719 0.089 C02 XB1 8 XB1 C03 C9 C 0 1 Y N N 33.489 -32.001 9.801 -5.401 -0.417 0.011 C03 XB1 9 XB1 C04 C10 C 0 1 Y N N 33.637 -32.015 8.329 -6.192 0.719 -0.085 C04 XB1 10 XB1 C06 C11 C 0 1 Y N N 32.720 -33.883 8.977 -4.063 1.293 -0.080 C06 XB1 11 XB1 C08 C12 C 0 1 N N N 33.350 -36.774 9.394 -1.348 0.960 -0.000 C08 XB1 12 XB1 C09 C13 C 0 1 N N N 34.833 -36.284 9.273 0.049 1.585 -0.015 C09 XB1 13 XB1 C12 C14 C 0 1 N N N 36.098 -38.533 6.928 3.532 0.293 0.148 C12 XB1 14 XB1 C14 C15 C 0 1 N N N 37.567 -39.875 5.487 5.948 -0.012 0.220 C14 XB1 15 XB1 C18 C16 C 0 1 N N N 40.994 -37.117 3.292 9.741 -1.759 -0.773 C18 XB1 16 XB1 C25 C17 C 0 1 N N N 34.383 -30.870 6.226 -8.405 1.777 -0.205 C25 XB1 17 XB1 N05 N1 N 0 1 Y N N 33.170 -33.175 7.789 -5.340 1.782 -0.141 N05 XB1 18 XB1 N11 N2 N 0 1 N N N 35.152 -37.370 6.923 2.440 1.080 0.070 N11 XB1 19 XB1 N13 N3 N 0 1 N N N 37.003 -38.541 5.795 4.762 0.844 0.135 N13 XB1 20 XB1 N16 N4 N 0 1 N N N 39.273 -38.686 4.213 8.396 -0.000 0.271 N16 XB1 21 XB1 N23 N5 N 0 1 Y N N 32.897 -33.256 10.141 -4.103 -0.013 0.010 N23 XB1 22 XB1 N24 N6 N 0 1 N N N 34.211 -30.897 7.673 -7.562 0.584 -0.104 N24 XB1 23 XB1 N27 N7 N 0 1 N N N 34.493 -29.807 9.868 -7.412 -1.759 0.062 N27 XB1 24 XB1 O01 O1 O 0 1 N N N 33.829 -30.783 11.915 -5.410 -2.744 0.174 O01 XB1 25 XB1 O19 O2 O 0 1 N N N 40.018 -37.077 2.259 10.907 -0.964 -0.541 O19 XB1 26 XB1 O29 O3 O 0 1 N N N 35.146 -28.834 7.904 -9.348 -0.709 -0.047 O29 XB1 27 XB1 S07 S1 S 0 1 N N N 32.026 -35.533 8.819 -2.595 2.267 -0.118 S07 XB1 28 XB1 S22 S2 S 0 1 N N N 35.071 -40.174 6.768 3.355 -1.406 0.264 S22 XB1 29 XB1 H1 H1 H 0 1 N N N 36.543 -36.131 7.913 0.963 -0.073 1.013 H1 XB1 30 XB1 H2 H2 H 0 1 N N N 35.060 -35.302 7.329 1.000 -0.197 -0.762 H2 XB1 31 XB1 H3 H3 H 0 1 N N N 39.459 -40.688 4.808 7.232 1.423 -0.746 H3 XB1 32 XB1 H4 H4 H 0 1 N N N 39.600 -39.476 6.127 7.195 1.548 1.029 H4 XB1 33 XB1 H5 H5 H 0 1 N N N 41.370 -38.966 4.353 8.660 -0.207 -1.805 H5 XB1 34 XB1 H6 H6 H 0 1 N N N 40.710 -37.643 5.372 7.627 -1.444 -1.049 H6 XB1 35 XB1 H7 H7 H 0 1 N N N 38.778 -38.212 1.065 11.727 0.458 0.717 H7 XB1 36 XB1 H8 H8 H 0 1 N N N 40.477 -38.782 1.193 10.691 -0.757 1.505 H8 XB1 37 XB1 H9 H9 H 0 1 N N N 38.189 -39.675 2.680 9.503 1.398 1.385 H9 XB1 38 XB1 H10 H10 H 0 1 N N N 39.900 -40.193 2.857 9.761 1.463 -0.375 H10 XB1 39 XB1 H11 H11 H 0 1 N N N 34.790 -28.742 11.631 -8.245 -3.443 -0.869 H11 XB1 40 XB1 H12 H12 H 0 1 N N N 36.026 -28.487 10.353 -7.492 -3.751 0.714 H12 XB1 41 XB1 H13 H13 H 0 1 N N N 34.395 -27.753 10.184 -9.065 -2.922 0.623 H13 XB1 42 XB1 H14 H14 H 0 1 N N N 33.157 -37.010 10.451 -1.451 0.282 -0.847 H14 XB1 43 XB1 H15 H15 H 0 1 N N N 33.244 -37.687 8.789 -1.488 0.407 0.928 H15 XB1 44 XB1 H16 H16 H 0 1 N N N 35.458 -36.970 9.863 0.152 2.264 0.832 H16 XB1 45 XB1 H17 H17 H 0 1 N N N 34.886 -35.275 9.708 0.189 2.139 -0.943 H17 XB1 46 XB1 H19 H19 H 0 1 N N N 37.061 -40.293 4.605 5.959 -0.702 -0.623 H19 XB1 47 XB1 H20 H20 H 0 1 N N N 37.418 -40.545 6.347 5.923 -0.577 1.152 H20 XB1 48 XB1 H21 H21 H 0 1 N N N 41.964 -37.390 2.851 9.585 -2.430 0.072 H21 XB1 49 XB1 H22 H22 H 0 1 N N N 41.067 -36.118 3.748 9.874 -2.345 -1.683 H22 XB1 50 XB1 H23 H23 H 0 1 N N N 34.844 -29.916 5.929 -8.593 2.002 -1.255 H23 XB1 51 XB1 H24 H24 H 0 1 N N N 35.033 -31.703 5.919 -9.353 1.597 0.303 H24 XB1 52 XB1 H25 H25 H 0 1 N N N 33.402 -30.971 5.738 -7.898 2.622 0.262 H25 XB1 53 XB1 H26 H26 H 0 1 N N N 33.144 -33.463 6.832 -5.593 2.716 -0.212 H26 XB1 54 XB1 H27 H27 H 0 1 N N N 34.341 -37.372 6.337 2.540 2.042 0.005 H27 XB1 55 XB1 H29 H29 H 0 1 N N N 37.226 -37.720 5.269 4.861 1.806 0.070 H29 XB1 56 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal XB1 C20 O19 SING N N 1 XB1 C20 C21 SING N N 2 XB1 O19 C18 SING N N 3 XB1 C21 N16 SING N N 4 XB1 C18 C17 SING N N 5 XB1 N16 C17 SING N N 6 XB1 N16 C15 SING N N 7 XB1 C15 C14 SING N N 8 XB1 C14 N13 SING N N 9 XB1 N13 C12 SING N N 10 XB1 C25 N24 SING N N 11 XB1 S22 C12 DOUB N N 12 XB1 N11 C12 SING N N 13 XB1 N11 C10 SING N N 14 XB1 N24 C04 SING N N 15 XB1 N24 C26 SING N N 16 XB1 N05 C04 SING Y N 17 XB1 N05 C06 SING Y N 18 XB1 C10 C09 SING N N 19 XB1 O29 C26 DOUB N N 20 XB1 C04 C03 DOUB Y N 21 XB1 C26 N27 SING N N 22 XB1 S07 C06 SING N N 23 XB1 S07 C08 SING N N 24 XB1 C06 N23 DOUB Y N 25 XB1 C09 C08 SING N N 26 XB1 C03 N23 SING Y N 27 XB1 C03 C02 SING N N 28 XB1 N27 C02 SING N N 29 XB1 N27 C28 SING N N 30 XB1 C02 O01 DOUB N N 31 XB1 C10 H1 SING N N 32 XB1 C10 H2 SING N N 33 XB1 C15 H3 SING N N 34 XB1 C15 H4 SING N N 35 XB1 C17 H5 SING N N 36 XB1 C17 H6 SING N N 37 XB1 C20 H7 SING N N 38 XB1 C20 H8 SING N N 39 XB1 C21 H9 SING N N 40 XB1 C21 H10 SING N N 41 XB1 C28 H11 SING N N 42 XB1 C28 H12 SING N N 43 XB1 C28 H13 SING N N 44 XB1 C08 H14 SING N N 45 XB1 C08 H15 SING N N 46 XB1 C09 H16 SING N N 47 XB1 C09 H17 SING N N 48 XB1 C14 H19 SING N N 49 XB1 C14 H20 SING N N 50 XB1 C18 H21 SING N N 51 XB1 C18 H22 SING N N 52 XB1 C25 H23 SING N N 53 XB1 C25 H24 SING N N 54 XB1 C25 H25 SING N N 55 XB1 N05 H26 SING N N 56 XB1 N11 H27 SING N N 57 XB1 N13 H29 SING N N 58 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor XB1 SMILES ACDLabs 12.01 "C(CCSc2nc1C(=O)N(C(N(c1n2)C)=O)C)NC(NCCN3CCOCC3)=S" XB1 InChI InChI 1.03 "InChI=1S/C17H27N7O3S2/c1-22-13-12(14(25)23(2)17(22)26)20-16(21-13)29-11-3-4-18-15(28)19-5-6-24-7-9-27-10-8-24/h3-11H2,1-2H3,(H,20,21)(H2,18,19,28)" XB1 InChIKey InChI 1.03 DFOUYIHNRZAXAX-UHFFFAOYSA-N XB1 SMILES_CANONICAL CACTVS 3.385 "CN1C(=O)N(C)c2[nH]c(SCCCNC(=S)NCCN3CCOCC3)nc2C1=O" XB1 SMILES CACTVS 3.385 "CN1C(=O)N(C)c2[nH]c(SCCCNC(=S)NCCN3CCOCC3)nc2C1=O" XB1 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CN1c2c(nc([nH]2)SCCCNC(=S)NCCN3CCOCC3)C(=O)N(C1=O)C" XB1 SMILES "OpenEye OEToolkits" 2.0.7 "CN1c2c(nc([nH]2)SCCCNC(=S)NCCN3CCOCC3)C(=O)N(C1=O)C" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier XB1 "SYSTEMATIC NAME" ACDLabs 12.01 "N-{3-[(1,3-dimethyl-2,6-dioxo-2,3,6,9-tetrahydro-1H-purin-8-yl)sulfanyl]propyl}-N'-[2-(morpholin-4-yl)ethyl]thiourea" XB1 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "1-[3-[[1,3-dimethyl-2,6-bis(oxidanylidene)-9~{H}-purin-8-yl]sulfanyl]propyl]-3-(2-morpholin-4-ylethyl)thiourea" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site XB1 "Create component" 2020-12-08 RCSB XB1 "Initial release" 2021-02-17 RCSB ##