data_XBC # _chem_comp.id XBC _chem_comp.name "Cruentaren A" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C33 H51 N O8" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "(2R,3S)-N-{(2Z,5R,6R,7S)-7-[(3S,5Z,8S,9R)-9,14-dihydroxy-12-methoxy-8-methyl-1-oxo-3,4,7,8,9,10-hexahydro-1H-2-benzoxacyclododecin-3-yl]-6-hydroxy-5-methyloct-2-en-1-yl}-3-hydroxy-2-methylhexanamide" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-11-09 _chem_comp.pdbx_modified_date 2023-03-31 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 589.760 _chem_comp.one_letter_code ? _chem_comp.three_letter_code XBC _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8F2K _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal XBC C10 C1 C 0 1 N N S 176.142 133.562 142.104 -2.469 2.956 -0.433 C10 XBC 1 XBC C13 C2 C 0 1 N N N 174.547 130.883 139.797 -0.438 5.038 -0.782 C13 XBC 2 XBC C15 C3 C 0 1 N N N 174.726 133.276 137.944 2.284 4.306 0.160 C15 XBC 3 XBC C17 C4 C 0 1 N N N 175.567 135.765 137.439 3.582 2.398 0.958 C17 XBC 4 XBC C20 C5 C 0 1 N N R 174.391 138.577 136.737 6.976 0.738 0.339 C20 XBC 5 XBC C21 C6 C 0 1 N N S 174.409 140.010 136.210 7.297 -0.757 0.387 C21 XBC 6 XBC C24 C7 C 0 1 N N N 176.314 141.079 134.842 9.141 -2.443 0.372 C24 XBC 7 XBC C26 C8 C 0 1 N N N 172.942 138.114 136.888 7.287 1.282 -1.056 C26 XBC 8 XBC C02 C9 C 0 1 N N R 172.989 133.977 146.715 -5.051 -0.935 0.934 C02 XBC 9 XBC C03 C10 C 0 1 N N S 173.763 135.203 147.200 -5.841 -0.000 1.851 C03 XBC 10 XBC C04 C11 C 0 1 N N N 174.692 134.818 148.354 -4.920 0.913 2.665 C04 XBC 11 XBC C05 C12 C 0 1 N N N 174.607 135.798 146.059 -6.792 0.881 1.021 C05 XBC 12 XBC C06 C13 C 0 1 N N N 173.673 136.374 144.957 -6.627 0.596 -0.448 C06 XBC 13 XBC C07 C14 C 0 1 N N N 173.928 136.333 143.641 -5.766 1.195 -1.234 C07 XBC 14 XBC C08 C15 C 0 1 N N N 175.213 135.720 143.008 -4.853 2.306 -0.788 C08 XBC 15 XBC C09 C16 C 0 1 N N S 174.881 134.277 142.589 -3.398 1.890 -1.018 C09 XBC 16 XBC C11 C17 C 0 1 N N R 175.791 132.178 141.514 -1.018 2.607 -0.768 C11 XBC 17 XBC C12 C18 C 0 1 N N R 174.937 132.290 140.244 -0.089 3.674 -0.183 C12 XBC 18 XBC C14 C19 C 0 1 N N N 175.715 132.972 139.102 1.362 3.325 -0.518 C14 XBC 19 XBC C16 C20 C 0 1 N N N 174.728 134.466 137.299 3.265 3.871 0.911 C16 XBC 20 XBC C19 C21 C 0 1 N N N 175.126 137.683 135.730 5.515 0.948 0.646 C19 XBC 21 XBC C23 C22 C 0 1 N N N 175.854 140.553 136.226 8.802 -0.961 0.200 C23 XBC 22 XBC C25 C23 C 0 1 N N N 177.815 141.443 134.830 10.645 -2.648 0.184 C25 XBC 23 XBC C29 C24 C 0 1 N N N 177.103 133.368 143.275 -2.644 3.006 1.087 C29 XBC 24 XBC C31 C25 C 0 1 N N N 173.141 132.905 143.527 -2.861 -0.429 -1.139 C31 XBC 25 XBC C32 C26 C 0 1 Y N N 172.810 131.664 144.405 -2.508 -1.753 -0.615 C32 XBC 26 XBC C33 C27 C 0 1 Y N N 172.132 130.601 143.811 -1.676 -2.568 -1.413 C33 XBC 27 XBC C35 C28 C 0 1 Y N N 171.807 129.465 144.557 -1.307 -3.825 -0.970 C35 XBC 28 XBC C36 C29 C 0 1 Y N N 172.160 129.397 145.907 -1.748 -4.284 0.265 C36 XBC 29 XBC C38 C30 C 0 1 N N N 172.118 127.029 146.025 -0.562 -6.294 -0.171 C38 XBC 30 XBC C39 C31 C 0 1 Y N N 172.836 130.462 146.506 -2.556 -3.468 1.049 C39 XBC 31 XBC C40 C32 C 0 1 Y N N 173.162 131.601 145.765 -2.921 -2.223 0.630 C40 XBC 32 XBC C41 C33 C 0 1 N N N 173.909 132.762 146.471 -3.763 -1.414 1.588 C41 XBC 33 XBC N18 N1 N 0 1 N N N 175.683 136.363 136.087 5.002 2.194 0.660 N18 XBC 34 XBC O01 O1 O 0 1 N N N 172.052 133.632 147.689 -5.881 -2.088 0.657 O01 XBC 35 XBC O22 O2 O 0 1 N N N 173.607 140.810 137.020 6.591 -1.430 -0.657 O22 XBC 36 XBC O27 O3 O 0 1 N N N 175.265 138.077 134.620 4.802 -0.004 0.880 O27 XBC 37 XBC O28 O4 O 0 1 N N N 176.968 131.505 141.193 -0.692 1.334 -0.208 O28 XBC 38 XBC O30 O5 O 0 1 N N N 174.355 133.625 143.718 -3.135 0.622 -0.359 O30 XBC 39 XBC O34 O6 O 0 1 N N N 171.782 130.675 142.453 -1.226 -2.130 -2.626 O34 XBC 40 XBC O37 O7 O 0 1 N N N 171.833 128.253 146.667 -1.393 -5.519 0.696 O37 XBC 41 XBC O42 O8 O 0 1 N N N 172.370 133.241 142.696 -2.937 -0.285 -2.354 O42 XBC 42 XBC H101 H1 H 0 0 N N N 176.630 134.171 141.329 -2.717 3.928 -0.859 H101 XBC 43 XBC H131 H2 H 0 0 N N N 173.990 130.383 140.603 -1.472 5.286 -0.543 H131 XBC 44 XBC H132 H3 H 0 0 N N N 173.915 130.946 138.899 0.224 5.797 -0.366 H132 XBC 45 XBC H133 H4 H 0 0 N N N 175.455 130.307 139.567 -0.313 5.002 -1.864 H133 XBC 46 XBC H151 H5 H 0 0 N N N 174.018 132.518 137.645 2.135 5.367 0.027 H151 XBC 47 XBC H171 H6 H 0 0 N N N 176.566 135.527 137.832 3.360 2.011 1.953 H171 XBC 48 XBC H172 H7 H 0 0 N N N 175.063 136.467 138.119 2.977 1.872 0.220 H172 XBC 49 XBC H201 H8 H 0 0 N N N 174.899 138.532 137.712 7.581 1.264 1.077 H201 XBC 50 XBC H211 H9 H 0 0 N N N 174.043 140.013 135.173 6.993 -1.163 1.352 H211 XBC 51 XBC H241 H10 H 0 0 N N N 175.729 141.976 134.591 8.852 -2.768 1.372 H241 XBC 52 XBC H242 H11 H 0 0 N N N 176.132 140.300 134.088 8.599 -3.028 -0.371 H242 XBC 53 XBC H262 H12 H 0 0 N N N 172.423 138.760 137.611 6.681 0.756 -1.795 H262 XBC 54 XBC H261 H13 H 0 0 N N N 172.435 138.174 135.914 7.058 2.347 -1.091 H261 XBC 55 XBC H263 H14 H 0 0 N N N 172.925 137.074 137.247 8.343 1.130 -1.278 H263 XBC 56 XBC H021 H15 H 0 0 N N N 172.487 134.229 145.769 -4.837 -0.445 -0.009 H021 XBC 57 XBC H031 H16 H 0 0 N N N 173.050 135.963 147.551 -6.442 -0.596 2.545 H031 XBC 58 XBC H043 H17 H 0 0 N N N 174.099 134.391 149.176 -4.323 1.523 1.988 H043 XBC 59 XBC H041 H18 H 0 0 N N N 175.422 134.074 148.004 -5.521 1.560 3.303 H041 XBC 60 XBC H042 H19 H 0 0 N N N 175.223 135.713 148.711 -4.260 0.304 3.283 H042 XBC 61 XBC H051 H20 H 0 0 N N N 175.241 135.011 145.625 -7.817 0.654 1.317 H051 XBC 62 XBC H052 H21 H 0 0 N N N 175.242 136.603 146.457 -6.587 1.924 1.240 H052 XBC 63 XBC H061 H22 H 0 0 N N N 172.752 136.841 145.274 -7.278 -0.155 -0.896 H061 XBC 64 XBC H071 H23 H 0 0 N N N 173.191 136.754 142.973 -5.709 0.886 -2.278 H071 XBC 65 XBC H082 H24 H 0 0 N N N 176.030 135.718 143.744 -5.066 3.204 -1.372 H082 XBC 66 XBC H081 H25 H 0 0 N N N 175.514 136.307 142.128 -5.012 2.547 0.257 H081 XBC 67 XBC H091 H26 H 0 0 N N N 174.144 134.302 141.772 -3.224 1.805 -2.090 H091 XBC 68 XBC H111 H27 H 0 0 N N N 175.221 131.615 142.268 -0.893 2.571 -1.850 H111 XBC 69 XBC H121 H28 H 0 0 N N N 174.029 132.871 140.464 -0.213 3.710 0.899 H121 XBC 70 XBC H141 H29 H 0 0 N N N 176.511 132.302 138.744 1.508 3.376 -1.597 H141 XBC 71 XBC H142 H30 H 0 0 N N N 176.161 133.910 139.465 1.584 2.317 -0.169 H142 XBC 72 XBC H161 H31 H 0 0 N N N 173.985 134.525 136.518 3.848 4.568 1.496 H161 XBC 73 XBC H232 H32 H 0 0 N N N 176.530 139.743 136.537 9.091 -0.636 -0.800 H232 XBC 74 XBC H231 H33 H 0 0 N N N 175.912 141.377 136.952 9.343 -0.376 0.943 H231 XBC 75 XBC H252 H34 H 0 0 N N N 178.096 141.810 133.832 10.934 -2.323 -0.815 H252 XBC 76 XBC H251 H35 H 0 0 N N N 178.008 142.227 135.577 11.187 -2.062 0.927 H251 XBC 77 XBC H253 H36 H 0 0 N N N 178.411 140.551 135.073 10.886 -3.703 0.307 H253 XBC 78 XBC H291 H37 H 0 0 N N N 177.361 134.347 143.704 -3.678 3.254 1.325 H291 XBC 79 XBC H293 H38 H 0 0 N N N 176.623 132.746 144.044 -2.395 2.035 1.513 H293 XBC 80 XBC H292 H39 H 0 0 N N N 178.018 132.871 142.920 -1.982 3.766 1.503 H292 XBC 81 XBC H351 H40 H 0 0 N N N 171.285 128.642 144.091 -0.663 -4.447 -1.571 H351 XBC 82 XBC H383 H41 H 0 0 N N N 171.834 126.194 146.683 -1.074 -6.451 -1.120 H383 XBC 83 XBC H381 H42 H 0 0 N N N 171.548 126.966 145.086 0.374 -5.764 -0.347 H381 XBC 84 XBC H382 H43 H 0 0 N N N 173.194 126.973 145.805 -0.353 -7.258 0.293 H382 XBC 85 XBC H391 H44 H 0 0 N N N 173.109 130.405 147.549 -2.903 -3.826 2.010 H391 XBC 86 XBC H411 H45 H 0 0 N N N 174.288 132.404 147.439 -3.149 -0.602 1.951 H411 XBC 87 XBC H412 H46 H 0 0 N N N 174.753 133.077 145.840 -4.026 -2.071 2.432 H412 XBC 88 XBC H181 H47 H 0 0 N N N 176.164 135.845 135.380 5.572 2.956 0.473 H181 XBC 89 XBC H011 H48 H 0 0 N N N 171.477 134.370 147.851 -5.464 -2.743 0.080 H011 XBC 90 XBC H221 H49 H 0 0 N N N 172.717 140.478 137.012 6.812 -1.119 -1.545 H221 XBC 91 XBC H281 H50 H 0 0 N N N 177.510 131.426 141.969 -0.780 1.292 0.754 H281 XBC 92 XBC H341 H51 H 0 0 N N N 171.882 131.569 142.148 -0.383 -1.658 -2.585 H341 XBC 93 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal XBC O27 C19 DOUB N N 1 XBC C25 C24 SING N N 2 XBC C24 C23 SING N N 3 XBC C19 N18 SING N N 4 XBC C19 C20 SING N N 5 XBC N18 C17 SING N N 6 XBC C21 C23 SING N N 7 XBC C21 C20 SING N N 8 XBC C21 O22 SING N N 9 XBC C20 C26 SING N N 10 XBC C16 C17 SING N N 11 XBC C16 C15 DOUB N Z 12 XBC C15 C14 SING N N 13 XBC C14 C12 SING N N 14 XBC C13 C12 SING N N 15 XBC C12 C11 SING N N 16 XBC O28 C11 SING N N 17 XBC C11 C10 SING N N 18 XBC C10 C09 SING N N 19 XBC C10 C29 SING N N 20 XBC O34 C33 SING N N 21 XBC C09 C08 SING N N 22 XBC C09 O30 SING N N 23 XBC O42 C31 DOUB N N 24 XBC C08 C07 SING N N 25 XBC C31 O30 SING N N 26 XBC C31 C32 SING N N 27 XBC C07 C06 DOUB N Z 28 XBC C33 C32 DOUB Y N 29 XBC C33 C35 SING Y N 30 XBC C32 C40 SING Y N 31 XBC C35 C36 DOUB Y N 32 XBC C06 C05 SING N N 33 XBC C40 C41 SING N N 34 XBC C40 C39 DOUB Y N 35 XBC C36 C39 SING Y N 36 XBC C36 O37 SING N N 37 XBC C38 O37 SING N N 38 XBC C05 C03 SING N N 39 XBC C41 C02 SING N N 40 XBC C02 C03 SING N N 41 XBC C02 O01 SING N N 42 XBC C03 C04 SING N N 43 XBC C10 H101 SING N N 44 XBC C13 H131 SING N N 45 XBC C13 H132 SING N N 46 XBC C13 H133 SING N N 47 XBC C15 H151 SING N N 48 XBC C17 H171 SING N N 49 XBC C17 H172 SING N N 50 XBC C20 H201 SING N N 51 XBC C21 H211 SING N N 52 XBC C24 H241 SING N N 53 XBC C24 H242 SING N N 54 XBC C26 H262 SING N N 55 XBC C26 H261 SING N N 56 XBC C26 H263 SING N N 57 XBC C02 H021 SING N N 58 XBC C03 H031 SING N N 59 XBC C04 H043 SING N N 60 XBC C04 H041 SING N N 61 XBC C04 H042 SING N N 62 XBC C05 H051 SING N N 63 XBC C05 H052 SING N N 64 XBC C06 H061 SING N N 65 XBC C07 H071 SING N N 66 XBC C08 H082 SING N N 67 XBC C08 H081 SING N N 68 XBC C09 H091 SING N N 69 XBC C11 H111 SING N N 70 XBC C12 H121 SING N N 71 XBC C14 H141 SING N N 72 XBC C14 H142 SING N N 73 XBC C16 H161 SING N N 74 XBC C23 H232 SING N N 75 XBC C23 H231 SING N N 76 XBC C25 H252 SING N N 77 XBC C25 H251 SING N N 78 XBC C25 H253 SING N N 79 XBC C29 H291 SING N N 80 XBC C29 H293 SING N N 81 XBC C29 H292 SING N N 82 XBC C35 H351 SING N N 83 XBC C38 H383 SING N N 84 XBC C38 H381 SING N N 85 XBC C38 H382 SING N N 86 XBC C39 H391 SING N N 87 XBC C41 H411 SING N N 88 XBC C41 H412 SING N N 89 XBC N18 H181 SING N N 90 XBC O01 H011 SING N N 91 XBC O22 H221 SING N N 92 XBC O28 H281 SING N N 93 XBC O34 H341 SING N N 94 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor XBC SMILES ACDLabs 12.01 "CCCC(O)C(C)C(=O)NC\C=C/CC(C)C(O)C(C)C1CC=CCC(C)C(O)Cc2cc(OC)cc(O)c2C(=O)O1" XBC InChI InChI 1.06 "InChI=1S/C33H51NO8/c1-7-12-26(35)22(4)32(39)34-16-11-10-14-21(3)31(38)23(5)29-15-9-8-13-20(2)27(36)18-24-17-25(41-6)19-28(37)30(24)33(40)42-29/h8-11,17,19-23,26-27,29,31,35-38H,7,12-16,18H2,1-6H3,(H,34,39)/b9-8-,11-10-/t20-,21+,22+,23+,26-,27+,29-,31+/m0/s1" XBC InChIKey InChI 1.06 UXPPKIOUXFFKDI-QGMVIAOPSA-N XBC SMILES_CANONICAL CACTVS 3.385 "CCC[C@H](O)[C@@H](C)C(=O)NC\C=C/C[C@@H](C)[C@@H](O)[C@H](C)[C@@H]1C\C=C/C[C@H](C)[C@H](O)Cc2cc(OC)cc(O)c2C(=O)O1" XBC SMILES CACTVS 3.385 "CCC[CH](O)[CH](C)C(=O)NCC=CC[CH](C)[CH](O)[CH](C)[CH]1CC=CC[CH](C)[CH](O)Cc2cc(OC)cc(O)c2C(=O)O1" XBC SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCC[C@@H]([C@@H](C)C(=O)NC/C=C\C[C@@H](C)[C@H]([C@H](C)[C@@H]1C/C=C\C[C@@H]([C@@H](Cc2cc(cc(c2C(=O)O1)O)OC)O)C)O)O" XBC SMILES "OpenEye OEToolkits" 2.0.7 "CCCC(C(C)C(=O)NCC=CCC(C)C(C(C)C1CC=CCC(C(Cc2cc(cc(c2C(=O)O1)O)OC)O)C)O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier XBC "SYSTEMATIC NAME" ACDLabs 12.01 "(2R,3S)-N-{(2Z,5R,6R,7S)-7-[(3S,5Z,8S,9R)-9,14-dihydroxy-12-methoxy-8-methyl-1-oxo-3,4,7,8,9,10-hexahydro-1H-2-benzoxacyclododecin-3-yl]-6-hydroxy-5-methyloct-2-en-1-yl}-3-hydroxy-2-methylhexanamide" XBC "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{R},3~{S})-~{N}-[(~{Z},5~{R},6~{R},7~{S})-7-[(4~{S},6~{Z},9~{S},10~{R})-14-methoxy-9-methyl-10,16-bis(oxidanyl)-2-oxidanylidene-3-oxabicyclo[10.4.0]hexadeca-1(16),6,12,14-tetraen-4-yl]-5-methyl-6-oxidanyl-oct-2-enyl]-2-methyl-3-oxidanyl-hexanamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site XBC "Create component" 2022-11-09 RCSB XBC "Initial release" 2023-04-05 RCSB # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id XBC _pdbx_chem_comp_synonyms.name "(2R,3S)-N-{(2Z,5R,6R,7S)-7-[(3S,5Z,8S,9R)-9,14-dihydroxy-12-methoxy-8-methyl-1-oxo-3,4,7,8,9,10-hexahydro-1H-2-benzoxacyclododecin-3-yl]-6-hydroxy-5-methyloct-2-en-1-yl}-3-hydroxy-2-methylhexanamide" _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? #