data_XBW # _chem_comp.id XBW _chem_comp.name "~{N}-(phenylmethyl)pyridine-2-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C13 H12 N2 O" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-06-06 _chem_comp.pdbx_modified_date 2024-06-07 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 212.247 _chem_comp.one_letter_code ? _chem_comp.three_letter_code XBW _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8P8F _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal XBW C1 C1 C 0 1 Y N N N N N 29.912 -10.827 3.773 -4.718 0.060 -0.008 C1 XBW 1 XBW C13 C2 C 0 1 Y N N N N N 22.451 -14.934 4.079 4.223 0.714 -1.198 C13 XBW 2 XBW C14 C3 C 0 1 Y N N N N N 23.342 -15.930 3.736 4.791 1.108 -0.001 C14 XBW 3 XBW C15 C4 C 0 1 Y N N N N N 24.545 -15.594 3.138 4.226 0.711 1.196 C15 XBW 4 XBW C16 C5 C 0 1 Y N N N N N 24.853 -14.255 2.883 3.092 -0.080 1.196 C16 XBW 5 XBW C2 C6 C 0 1 Y N N N N N 30.503 -9.679 3.325 -4.530 1.433 -0.001 C2 XBW 6 XBW C6 C7 C 0 1 Y N N N N N 28.534 -11.053 3.576 -3.600 -0.760 -0.003 C6 XBW 7 XBW C7 C8 C 0 1 N N N N N N 26.250 -10.276 2.724 -1.130 -1.041 0.002 C7 XBW 8 XBW C3 C9 C 0 1 Y N N N N N 29.693 -8.796 2.652 -3.241 1.943 0.006 C3 XBW 9 XBW N4 N1 N 0 1 Y N N N N N 28.339 -8.960 2.467 -2.198 1.142 0.005 N4 XBW 10 XBW C5 C10 C 0 1 Y N N N N N 27.765 -10.084 2.937 -2.334 -0.179 0.004 C5 XBW 11 XBW N8 N2 N 0 1 N N N N N N 25.709 -11.414 3.196 0.098 -0.484 0.001 N8 XBW 12 XBW O9 O1 O 0 1 N N N N N N 25.635 -9.634 1.858 -1.248 -2.250 0.001 O9 XBW 13 XBW C10 C11 C 0 1 N N N N N N 24.305 -11.774 2.966 1.289 -1.337 -0.000 C10 XBW 14 XBW C11 C12 C 0 1 Y N N N N N 23.968 -13.236 3.230 2.524 -0.475 -0.001 C11 XBW 15 XBW C12 C13 C 0 1 Y N N N N N 22.767 -13.595 3.844 3.087 -0.073 -1.198 C12 XBW 16 XBW H17 H1 H 0 1 N N N N N N 30.507 -11.570 4.284 -5.712 -0.362 -0.014 H17 XBW 17 XBW H25 H2 H 0 1 N N N N N N 21.505 -15.192 4.531 4.665 1.024 -2.134 H25 XBW 18 XBW H26 H3 H 0 1 N N N N N N 23.103 -16.965 3.933 5.677 1.727 -0.002 H26 XBW 19 XBW H27 H4 H 0 1 N N N N N N 25.247 -16.369 2.868 4.670 1.019 2.131 H27 XBW 20 XBW H28 H5 H 0 1 N N N N N N 25.791 -14.006 2.410 2.651 -0.391 2.132 H28 XBW 21 XBW H18 H6 H 0 1 N N N N N N 31.551 -9.477 3.491 -5.380 2.099 -0.000 H18 XBW 22 XBW H20 H7 H 0 1 N N N N N N 28.079 -11.971 3.918 -3.709 -1.834 -0.004 H20 XBW 23 XBW H19 H8 H 0 1 N N N N N N 30.152 -7.910 2.239 -3.092 3.012 0.012 H19 XBW 24 XBW H21 H9 H 0 1 N N N N N N 26.285 -12.038 3.723 0.192 0.481 0.002 H21 XBW 25 XBW H22 H10 H 0 1 N N N N N N 23.680 -11.154 3.626 1.286 -1.967 0.889 H22 XBW 26 XBW H23 H11 H 0 1 N N N N N N 24.062 -11.551 1.917 1.284 -1.966 -0.891 H23 XBW 27 XBW H24 H12 H 0 1 N N N N N N 22.071 -12.825 4.142 2.643 -0.381 -2.133 H24 XBW 28 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal XBW O9 C7 DOUB N N 1 XBW N4 C3 DOUB Y N 2 XBW N4 C5 SING Y N 3 XBW C3 C2 SING Y N 4 XBW C7 C5 SING N N 5 XBW C7 N8 SING N N 6 XBW C16 C15 DOUB Y N 7 XBW C16 C11 SING Y N 8 XBW C5 C6 DOUB Y N 9 XBW C10 N8 SING N N 10 XBW C10 C11 SING N N 11 XBW C15 C14 SING Y N 12 XBW C11 C12 DOUB Y N 13 XBW C2 C1 DOUB Y N 14 XBW C6 C1 SING Y N 15 XBW C14 C13 DOUB Y N 16 XBW C12 C13 SING Y N 17 XBW C1 H17 SING N N 18 XBW C13 H25 SING N N 19 XBW C14 H26 SING N N 20 XBW C15 H27 SING N N 21 XBW C16 H28 SING N N 22 XBW C2 H18 SING N N 23 XBW C6 H20 SING N N 24 XBW C3 H19 SING N N 25 XBW N8 H21 SING N N 26 XBW C10 H22 SING N N 27 XBW C10 H23 SING N N 28 XBW C12 H24 SING N N 29 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor XBW InChI InChI 1.06 "InChI=1S/C13H12N2O/c16-13(12-8-4-5-9-14-12)15-10-11-6-2-1-3-7-11/h1-9H,10H2,(H,15,16)" XBW InChIKey InChI 1.06 NNIFYECULHSHBH-UHFFFAOYSA-N XBW SMILES_CANONICAL CACTVS 3.385 "O=C(NCc1ccccc1)c2ccccn2" XBW SMILES CACTVS 3.385 "O=C(NCc1ccccc1)c2ccccn2" XBW SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)CNC(=O)c2ccccn2" XBW SMILES "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)CNC(=O)c2ccccn2" # _pdbx_chem_comp_identifier.comp_id XBW _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "~{N}-(phenylmethyl)pyridine-2-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site XBW "Create component" 2023-06-06 PDBE XBW "Initial release" 2024-06-12 RCSB #