data_XC0 # _chem_comp.id XC0 _chem_comp.name "(2S)-2-aminooctanoic acid" _chem_comp.type "L-peptide linking" _chem_comp.pdbx_type HETAIN _chem_comp.formula "C8 H17 N O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-11-10 _chem_comp.pdbx_modified_date 2023-11-03 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 159.226 _chem_comp.one_letter_code ? _chem_comp.three_letter_code XC0 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8F1F _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal XC0 C2 C2 C 0 1 N N N N N N 19.047 -4.665 12.471 5.609 0.064 -0.139 C2 XC0 1 XC0 N N N 0 1 N N N Y Y N 16.708 -6.734 5.338 -1.892 1.796 -0.184 N XC0 2 XC0 CA CA C 0 1 N N S Y N N 15.699 -6.006 6.005 -1.873 0.358 -0.481 CA XC0 3 XC0 CB CB C 0 1 N N N N N N 15.633 -6.247 7.505 -0.679 -0.292 0.221 CB XC0 4 XC0 CG CG C 0 1 N N N N N N 16.783 -5.654 8.317 0.621 0.260 -0.367 CG XC0 5 XC0 CD CD C 0 1 N N N N N N 16.679 -6.047 9.782 1.815 -0.391 0.335 CD XC0 6 XC0 CE CE C 0 1 N N N N N N 17.925 -5.526 10.464 3.115 0.162 -0.253 CE XC0 7 XC0 C C C 0 1 N N N Y N Y 15.898 -4.532 5.749 -3.150 -0.274 0.011 C XC0 8 XC0 O O O 0 1 N N N Y N Y 16.970 -4.212 5.442 -3.816 0.285 0.849 O XC0 9 XC0 C1 C1 C 0 1 N N N N N N 17.724 -5.145 11.912 4.309 -0.489 0.449 C1 XC0 10 XC0 OXT O1 O 0 1 N Y N Y N Y 14.923 -3.680 6.025 -3.547 -1.457 -0.483 O1 XC0 11 XC0 H1 H1 H 0 1 N N N N N N 18.919 -4.383 13.526 5.649 -0.159 -1.205 H1 XC0 12 XC0 H4 H2 H 0 1 N N N N N N 19.791 -5.471 12.395 5.644 1.143 0.008 H2 XC0 13 XC0 H3 H3 H 0 1 N N N N N N 19.392 -3.792 11.898 6.459 -0.400 0.361 H3 XC0 14 XC0 H H4 H 0 1 N N N Y Y N 16.580 -7.712 5.505 -1.972 1.959 0.809 H4 XC0 15 XC0 H2 H5 H 0 1 N Y N Y Y N 16.655 -6.554 4.356 -1.076 2.254 -0.560 H5 XC0 16 XC0 HA H7 H 0 1 N N N Y N N 14.722 -6.287 5.584 -1.786 0.210 -1.558 H7 XC0 17 XC0 H8 H8 H 0 1 N N N N N N 14.695 -5.810 7.878 -0.719 -0.070 1.287 H8 XC0 18 XC0 H9 H9 H 0 1 N N N N N N 15.624 -7.334 7.674 -0.715 -1.372 0.074 H9 XC0 19 XC0 H10 H10 H 0 1 N N N N N N 17.737 -6.024 7.913 0.661 0.037 -1.433 H10 XC0 20 XC0 H11 H11 H 0 1 N N N N N N 16.752 -4.557 8.236 0.657 1.339 -0.220 H11 XC0 21 XC0 H12 H12 H 0 1 N N N N N N 15.783 -5.595 10.233 1.775 -0.168 1.401 H12 XC0 22 XC0 H13 H13 H 0 1 N N N N N N 16.625 -7.141 9.877 1.779 -1.470 0.188 H13 XC0 23 XC0 H14 H14 H 0 1 N N N N N N 18.697 -6.308 10.417 3.155 -0.061 -1.319 H14 XC0 24 XC0 H15 H15 H 0 1 N N N N N N 18.271 -4.636 9.918 3.151 1.241 -0.106 H15 XC0 25 XC0 H16 H16 H 0 1 N N N N N N 16.977 -4.341 11.984 4.273 -1.568 0.302 H16 XC0 26 XC0 H17 H17 H 0 1 N N N N N N 17.376 -6.020 12.481 4.269 -0.266 1.515 H17 XC0 27 XC0 HXT H18 H 0 1 N Y N Y N Y 15.243 -2.790 5.931 -4.373 -1.823 -0.137 H18 XC0 28 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal XC0 N CA SING N N 1 XC0 O C DOUB N N 2 XC0 C CA SING N N 3 XC0 CA CB SING N N 4 XC0 CB CG SING N N 5 XC0 CG CD SING N N 6 XC0 CD CE SING N N 7 XC0 CE C1 SING N N 8 XC0 C1 C2 SING N N 9 XC0 C OXT SING N N 10 XC0 C2 H1 SING N N 11 XC0 C2 H4 SING N N 12 XC0 C2 H3 SING N N 13 XC0 N H SING N N 14 XC0 N H2 SING N N 15 XC0 CA HA SING N N 16 XC0 CB H8 SING N N 17 XC0 CB H9 SING N N 18 XC0 CG H10 SING N N 19 XC0 CG H11 SING N N 20 XC0 CD H12 SING N N 21 XC0 CD H13 SING N N 22 XC0 CE H14 SING N N 23 XC0 CE H15 SING N N 24 XC0 C1 H16 SING N N 25 XC0 C1 H17 SING N N 26 XC0 OXT HXT SING N N 27 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor XC0 SMILES ACDLabs 12.01 "NC(CCCCCC)C(=O)O" XC0 InChI InChI 1.06 "InChI=1S/C8H17NO2/c1-2-3-4-5-6-7(9)8(10)11/h7H,2-6,9H2,1H3,(H,10,11)/t7-/m0/s1" XC0 InChIKey InChI 1.06 AKVBCGQVQXPRLD-ZETCQYMHSA-N XC0 SMILES_CANONICAL CACTVS 3.385 "CCCCCC[C@H](N)C(O)=O" XC0 SMILES CACTVS 3.385 "CCCCCC[CH](N)C(O)=O" XC0 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCCCCC[C@@H](C(=O)O)N" XC0 SMILES "OpenEye OEToolkits" 2.0.7 "CCCCCCC(C(=O)O)N" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier XC0 "SYSTEMATIC NAME" ACDLabs 12.01 "(2S)-2-aminooctanoic acid" XC0 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{S})-2-azanyloctanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site XC0 "Create component" 2022-11-10 RCSB XC0 "Initial release" 2023-11-01 RCSB XC0 "Modify backbone" 2023-11-03 PDBE #