data_XC3 # _chem_comp.id XC3 _chem_comp.name "[(~{E})-3-[(3~{S},4~{R})-4-azanyl-1-[(2~{S})-2-azanylpropanoyl]-4-carboxy-pyrrolidin-3-yl]prop-1-enyl]-tris(oxidanyl)boranium" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C11 H21 B N3 O6" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 1 _chem_comp.pdbx_initial_date 2018-12-19 _chem_comp.pdbx_modified_date 2019-12-06 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 302.112 _chem_comp.one_letter_code ? _chem_comp.three_letter_code XC3 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6QAF _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal XC3 O21 O1 O 0 1 N N N 5.752 -21.849 7.422 2.677 -2.693 0.054 O21 XC3 1 XC3 C17 C1 C 0 1 N N N 5.819 -23.069 7.280 2.977 -1.518 0.031 C17 XC3 2 XC3 C18 C2 C 0 1 N N S 6.715 -23.929 8.139 4.410 -1.102 0.242 C18 XC3 3 XC3 N20 N1 N 0 1 N N N 8.090 -23.401 8.042 5.241 -2.295 0.452 N20 XC3 4 XC3 C19 C3 C 0 1 N N N 6.230 -23.920 9.589 4.907 -0.344 -0.991 C19 XC3 5 XC3 N2 N2 N 0 1 N N N 5.080 -23.671 6.358 2.029 -0.586 -0.188 N2 XC3 6 XC3 C3 C4 C 0 1 N N N 5.546 -24.811 5.564 2.198 0.885 -0.252 C3 XC3 7 XC3 C4 C5 C 0 1 N N R 4.318 -25.225 4.766 0.957 1.452 0.470 C4 XC3 8 XC3 N13 N3 N 0 1 N N N 4.693 -25.203 3.332 1.267 1.722 1.880 N13 XC3 9 XC3 C14 C6 C 0 1 N N N 3.882 -26.628 5.155 0.478 2.708 -0.211 C14 XC3 10 XC3 O16 O2 O 0 1 N N N 3.713 -26.885 6.383 -0.278 3.590 0.462 O16 XC3 11 XC3 O15 O3 O 0 1 N N N 3.734 -27.503 4.227 0.775 2.922 -1.362 O15 XC3 12 XC3 C5 C7 C 0 1 N N S 3.262 -24.144 5.005 -0.110 0.342 0.359 C5 XC3 13 XC3 C1 C8 C 0 1 N N N 3.616 -23.513 6.337 0.582 -0.799 -0.426 C1 XC3 14 XC3 C6 C9 C 0 1 N N N 1.842 -24.708 4.984 -1.331 0.853 -0.409 C6 XC3 15 XC3 C7 C10 C 0 1 N N N 0.776 -23.613 5.146 -2.404 -0.206 -0.407 C7 XC3 16 XC3 C8 C11 C 0 1 N N N -0.680 -24.051 5.068 -3.604 0.080 0.034 C8 XC3 17 XC3 B9 B1 B 1 1 N N N -1.749 -22.906 4.819 -4.712 -1.013 0.036 B9 XC3 18 XC3 O12 O4 O 0 1 N N N -1.582 -22.270 3.504 -5.758 -0.602 -0.742 O12 XC3 19 XC3 O11 O5 O 0 1 N N N -1.627 -21.879 5.880 -4.203 -2.179 -0.463 O11 XC3 20 XC3 O10 O6 O 0 1 N N N -3.129 -23.422 4.763 -5.148 -1.216 1.316 O10 XC3 21 XC3 H1 H1 H 0 1 N N N 6.690 -24.962 7.763 4.475 -0.455 1.116 H1 XC3 22 XC3 H2 H2 H 0 1 N N N 8.702 -23.957 8.605 6.207 -2.041 0.595 H2 XC3 23 XC3 H3 H3 H 0 1 N N N 8.393 -23.433 7.089 4.893 -2.846 1.221 H3 XC3 24 XC3 H5 H5 H 0 1 N N N 6.892 -24.550 10.201 4.841 -0.991 -1.866 H5 XC3 25 XC3 H6 H6 H 0 1 N N N 6.245 -22.890 9.974 4.290 0.541 -1.147 H6 XC3 26 XC3 H7 H7 H 0 1 N N N 5.204 -24.314 9.635 5.943 -0.043 -0.839 H7 XC3 27 XC3 H8 H8 H 0 1 N N N 5.884 -25.630 6.216 3.109 1.185 0.266 H8 XC3 28 XC3 H9 H9 H 0 1 N N N 6.366 -24.513 4.894 2.223 1.220 -1.288 H9 XC3 29 XC3 H10 H10 H 0 1 N N N 5.384 -25.904 3.157 1.964 2.447 1.964 H10 XC3 30 XC3 H11 H11 H 0 1 N N N 3.884 -25.385 2.773 0.433 1.962 2.394 H11 XC3 31 XC3 H13 H13 H 0 1 N N N 3.469 -27.797 6.485 -0.561 4.381 -0.017 H13 XC3 32 XC3 H14 H14 H 0 1 N N N 3.351 -23.383 4.216 -0.402 -0.003 1.351 H14 XC3 33 XC3 H15 H15 H 0 1 N N N 3.326 -22.452 6.369 0.350 -0.723 -1.489 H15 XC3 34 XC3 H16 H16 H 0 1 N N N 3.142 -24.048 7.173 0.275 -1.769 -0.037 H16 XC3 35 XC3 H17 H17 H 0 1 N N N 1.679 -25.221 4.024 -1.710 1.755 0.070 H17 XC3 36 XC3 H18 H18 H 0 1 N N N 1.736 -25.429 5.808 -1.045 1.079 -1.436 H18 XC3 37 XC3 H19 H19 H 0 1 N N N 1.047 -22.580 5.308 -2.183 -1.199 -0.768 H19 XC3 38 XC3 H20 H20 H 0 1 N N N -0.969 -25.086 5.176 -3.824 1.073 0.396 H20 XC3 39 XC3 H21 H21 H 0 1 N N N -0.709 -21.900 3.439 -6.487 -1.236 -0.787 H21 XC3 40 XC3 H22 H22 H 0 1 N N N -1.735 -22.288 6.731 -3.874 -2.109 -1.369 H22 XC3 41 XC3 H23 H23 H 0 1 N N N -3.338 -23.858 5.581 -5.523 -0.429 1.734 H23 XC3 42 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal XC3 N13 C4 SING N N 1 XC3 O12 B9 SING N N 2 XC3 O15 C14 DOUB N N 3 XC3 O10 B9 SING N N 4 XC3 C4 C5 SING N N 5 XC3 C4 C14 SING N N 6 XC3 C4 C3 SING N N 7 XC3 B9 C8 SING N N 8 XC3 B9 O11 SING N N 9 XC3 C6 C5 SING N N 10 XC3 C6 C7 SING N N 11 XC3 C5 C1 SING N N 12 XC3 C8 C7 DOUB N E 13 XC3 C14 O16 SING N N 14 XC3 C3 N2 SING N N 15 XC3 C1 N2 SING N N 16 XC3 N2 C17 SING N N 17 XC3 C17 O21 DOUB N N 18 XC3 C17 C18 SING N N 19 XC3 N20 C18 SING N N 20 XC3 C18 C19 SING N N 21 XC3 C18 H1 SING N N 22 XC3 N20 H2 SING N N 23 XC3 N20 H3 SING N N 24 XC3 C19 H5 SING N N 25 XC3 C19 H6 SING N N 26 XC3 C19 H7 SING N N 27 XC3 C3 H8 SING N N 28 XC3 C3 H9 SING N N 29 XC3 N13 H10 SING N N 30 XC3 N13 H11 SING N N 31 XC3 O16 H13 SING N N 32 XC3 C5 H14 SING N N 33 XC3 C1 H15 SING N N 34 XC3 C1 H16 SING N N 35 XC3 C6 H17 SING N N 36 XC3 C6 H18 SING N N 37 XC3 C7 H19 SING N N 38 XC3 C8 H20 SING N N 39 XC3 O12 H21 SING N N 40 XC3 O11 H22 SING N N 41 XC3 O10 H23 SING N N 42 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor XC3 InChI InChI 1.03 "InChI=1S/C11H21BN3O6/c1-7(13)9(16)15-5-8(3-2-4-12(19,20)21)11(14,6-15)10(17)18/h2,4,7-8,19-21H,3,5-6,13-14H2,1H3,(H,17,18)/q+1/b4-2+/t7-,8-,11-/m0/s1" XC3 InChIKey InChI 1.03 JFMLTOXMMAUHPB-JXWNCEHVSA-N XC3 SMILES_CANONICAL CACTVS 3.385 "C[C@H](N)C(=O)N1C[C@H](C/C=C/[B+](O)(O)O)[C@@](N)(C1)C(O)=O" XC3 SMILES CACTVS 3.385 "C[CH](N)C(=O)N1C[CH](CC=C[B+](O)(O)O)[C](N)(C1)C(O)=O" XC3 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "[B+](/C=C/C[C@H]1CN(C[C@]1(C(=O)O)N)C(=O)[C@H](C)N)(O)(O)O" XC3 SMILES "OpenEye OEToolkits" 2.0.6 "[B+](C=CCC1CN(CC1(C(=O)O)N)C(=O)C(C)N)(O)(O)O" # _pdbx_chem_comp_identifier.comp_id XC3 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.6 _pdbx_chem_comp_identifier.identifier "[(~{E})-3-[(3~{S},4~{R})-4-azanyl-1-[(2~{S})-2-azanylpropanoyl]-4-carboxy-pyrrolidin-3-yl]prop-1-enyl]-tris(oxidanyl)boranium" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site XC3 "Create component" 2018-12-19 EBI XC3 "Initial release" 2019-12-11 RCSB ##