data_XC4 # _chem_comp.id XC4 _chem_comp.name "1-[(1H-indole-5-carbonyl)oxy]-1H-benzotriazole" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C15 H10 N4 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-12-09 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 278.265 _chem_comp.one_letter_code ? _chem_comp.three_letter_code XC4 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag Y _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7KYU _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal XC4 C2 C1 C 0 1 Y N N N N N 9.427 3.051 22.272 -1.841 1.257 0.004 C2 XC4 1 XC4 C4 C2 C 0 1 Y N N N N N 8.599 1.731 24.130 -4.208 0.923 0.001 C4 XC4 2 XC4 C5 C3 C 0 1 Y N N N N N 7.393 2.384 24.060 -4.015 -0.473 -0.005 C5 XC4 3 XC4 C6 C4 C 0 1 Y N N N N N 7.172 3.396 23.100 -2.724 -0.997 0.004 C6 XC4 4 XC4 C8 C5 C 0 1 Y N N N N N 7.339 0.869 25.707 -6.232 -0.053 -0.005 C8 XC4 5 XC4 C10 C6 C 0 1 N N N N N N 7.935 4.805 21.151 -0.262 -0.671 0.002 C10 XC4 6 XC4 C1 C7 C 0 1 Y N N N N N 8.196 3.727 22.211 -1.635 -0.130 0.004 C1 XC4 7 XC4 C3 C8 C 0 1 Y N N N N N 9.642 2.060 23.226 -3.103 1.772 0.005 C3 XC4 8 XC4 C7 C9 C 0 1 Y N N N N N 6.563 1.836 25.079 -5.354 -1.068 -0.009 C7 XC4 9 XC4 N9 N1 N 0 1 Y N N N N N 8.531 0.826 25.132 -5.565 1.142 0.001 N9 XC4 10 XC4 O11 O1 O 0 1 N N N N N N 6.834 5.404 21.244 -0.083 -1.873 0.002 O11 XC4 11 XC4 H1 H1 H 0 1 N N N N N N 10.212 3.302 21.574 -0.992 1.924 0.008 H1 XC4 12 XC4 H2 H2 H 0 1 N N N N N N 6.222 3.908 23.054 -2.570 -2.066 -0.000 H2 XC4 13 XC4 H3 H3 H 0 1 N N N N N N 7.020 0.251 26.533 -7.306 -0.162 -0.007 H3 XC4 14 XC4 H5 H5 H 0 1 N N N N N N 10.591 1.548 23.277 -3.248 2.842 0.010 H5 XC4 15 XC4 H6 H6 H 0 1 N N N N N N 5.546 2.113 25.314 -5.590 -2.122 -0.013 H6 XC4 16 XC4 H7 H7 H 0 1 N N N N N N 9.274 0.213 25.400 -5.987 2.016 0.004 H7 XC4 17 XC4 O1 O2 O 0 1 N Y N N N N ? ? ? 0.791 0.166 0.001 O1 XC4 18 XC4 N1 N2 N 0 1 Y Y N N N N ? ? ? 1.899 -0.340 0.000 N1 XC4 19 XC4 C11 C11 C 0 1 Y Y N N N N ? ? ? 3.090 0.337 -0.001 C11 XC4 20 XC4 C12 C12 C 0 1 Y Y N N N N ? ? ? 4.084 -0.663 -0.001 C12 XC4 21 XC4 N3 N3 N 0 1 Y Y N N N N ? ? ? 3.419 -1.834 -0.000 N3 XC4 22 XC4 N2 N4 N 0 1 Y Y N N N N ? ? ? 2.153 -1.602 0.005 N2 XC4 23 XC4 C15 C15 C 0 1 Y Y N N N N ? ? ? 5.431 -0.293 -0.002 C15 XC4 24 XC4 C16 C16 C 0 1 Y Y N N N N ? ? ? 5.768 1.030 -0.004 C16 XC4 25 XC4 C17 C17 C 0 1 Y Y N N N N ? ? ? 4.786 2.013 -0.003 C17 XC4 26 XC4 C18 C18 C 0 1 Y Y N N N N ? ? ? 3.461 1.676 -0.002 C18 XC4 27 XC4 H4 H4 H 0 1 N Y N N N N ? ? ? 6.202 -1.050 -0.002 H4 XC4 28 XC4 H8 H8 H 0 1 N Y N N N N ? ? ? 6.810 1.316 -0.004 H8 XC4 29 XC4 H9 H9 H 0 1 N Y N N N N ? ? ? 5.072 3.054 -0.004 H9 XC4 30 XC4 H10 H10 H 0 1 N Y N N N N ? ? ? 2.706 2.448 -0.002 H10 XC4 31 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal XC4 C10 O11 DOUB N N 1 XC4 C10 C1 SING N N 2 XC4 C1 C2 SING Y N 3 XC4 C1 C6 DOUB Y N 4 XC4 C2 C3 DOUB Y N 5 XC4 C6 C5 SING Y N 6 XC4 C3 C4 SING Y N 7 XC4 C5 C4 DOUB Y N 8 XC4 C5 C7 SING Y N 9 XC4 C4 N9 SING Y N 10 XC4 C7 C8 DOUB Y N 11 XC4 N9 C8 SING Y N 12 XC4 C2 H1 SING N N 13 XC4 C6 H2 SING N N 14 XC4 C8 H3 SING N N 15 XC4 C3 H5 SING N N 16 XC4 C7 H6 SING N N 17 XC4 N9 H7 SING N N 18 XC4 C10 O1 SING N N 19 XC4 O1 N1 SING N N 20 XC4 N1 C11 SING Y N 21 XC4 C11 C12 DOUB Y N 22 XC4 C12 N3 SING Y N 23 XC4 N3 N2 DOUB Y N 24 XC4 N2 N1 SING Y N 25 XC4 C12 C15 SING Y N 26 XC4 C15 C16 DOUB Y N 27 XC4 C16 C17 SING Y N 28 XC4 C17 C18 DOUB Y N 29 XC4 C18 C11 SING Y N 30 XC4 C15 H4 SING N N 31 XC4 C16 H8 SING N N 32 XC4 C17 H9 SING N N 33 XC4 C18 H10 SING N N 34 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor XC4 SMILES ACDLabs 12.01 "c2cc1nccc1cc2C(=O)On3c4c(nn3)cccc4" XC4 InChI InChI 1.03 "InChI=1S/C15H10N4O2/c20-15(11-5-6-12-10(9-11)7-8-16-12)21-19-14-4-2-1-3-13(14)17-18-19/h1-9,16H" XC4 InChIKey InChI 1.03 YPFWNRLSYPAVJB-UHFFFAOYSA-N XC4 SMILES_CANONICAL CACTVS 3.385 "O=C(On1nnc2ccccc12)c3ccc4[nH]ccc4c3" XC4 SMILES CACTVS 3.385 "O=C(On1nnc2ccccc12)c3ccc4[nH]ccc4c3" XC4 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc2c(c1)nnn2OC(=O)c3ccc4c(c3)cc[nH]4" XC4 SMILES "OpenEye OEToolkits" 2.0.7 "c1ccc2c(c1)nnn2OC(=O)c3ccc4c(c3)cc[nH]4" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier XC4 "SYSTEMATIC NAME" ACDLabs 12.01 "1-[(1H-indole-5-carbonyl)oxy]-1H-benzotriazole" XC4 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "benzotriazol-1-yl 1~{H}-indole-5-carboxylate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site XC4 "Create component" 2020-12-09 RCSB XC4 "Initial release" 2020-12-16 RCSB XC4 "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id XC4 _pdbx_chem_comp_pcm.modified_residue_id CYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C10 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #