2'-deoxy-5'-O-[(S)-hydroxy{[(S)-hydroxy(phosphonooxy)phosphoryl]methyl}phosphoryl]cytidine
non-polymer
HETAIN
C10 H18 N3 O12 P3
0
2017-03-06
2017-05-05
N
REL
465.184
XC5
N
Corina
N
5V1P
RCSB
P1
P
0
1
N
N
N
55.950
6.099
14.952
1.177
-1.074
-0.507
PA
XC5
1
O1
O
0
1
N
N
N
54.700
6.177
15.952
1.014
-0.300
-1.910
O1A
XC5
2
O2
O
0
1
N
N
N
57.148
6.586
15.659
1.700
-2.437
-0.753
O2A
XC5
3
C1
C
0
1
N
N
N
56.322
4.397
14.450
2.340
-0.161
0.559
C3A
XC5
4
P2
P
0
1
N
N
N
54.901
3.375
13.958
3.962
-0.049
-0.266
PB
XC5
5
O3
O
0
1
N
N
N
54.989
3.035
12.507
3.812
0.662
-1.555
O1B
XC5
6
O4
O
0
1
N
N
N
53.504
4.043
14.302
4.530
-1.532
-0.534
O2B
XC5
7
O5
O
0
1
N
N
N
55.029
2.019
14.781
4.989
0.757
0.676
O3B
XC5
8
P3
P
0
1
N
N
N
54.950
1.881
16.365
6.534
1.187
0.534
PG
XC5
9
O6
O
0
1
N
N
N
54.499
3.210
16.844
7.137
1.510
1.992
O1G
XC5
10
O7
O
0
1
N
N
N
53.936
0.702
16.732
7.300
0.080
-0.082
O2G
XC5
11
O8
O
0
1
N
N
N
56.397
1.555
16.951
6.644
2.498
-0.395
O3G
XC5
12
N1
N
0
1
N
N
N
57.598
8.283
10.392
-5.242
0.574
0.647
N1
XC5
13
C2
C
0
1
N
N
N
58.444
8.679
9.417
-5.299
0.898
-0.658
C2
XC5
14
N2
N
0
1
N
N
N
59.780
8.715
9.614
-6.021
1.935
-1.077
N3
XC5
15
C3
C
0
1
N
N
N
60.298
8.359
10.787
-6.705
2.677
-0.216
C4
XC5
16
C4
C
0
1
N
N
N
59.441
7.955
11.824
-6.667
2.363
1.158
C5
XC5
17
C5
C
0
1
N
N
N
58.094
7.919
11.602
-5.927
1.306
1.569
C6
XC5
18
O9
O
0
1
N
N
N
57.962
8.988
8.338
-4.679
0.231
-1.469
O2
XC5
19
N3
N
0
1
N
N
N
61.654
8.386
10.994
-7.448
3.746
-0.661
N4
XC5
20
C6
C
0
1
N
N
R
56.145
8.256
10.118
-4.443
-0.576
1.078
C1'
XC5
21
C7
C
0
1
N
N
N
55.751
6.852
9.649
-4.981
-1.875
0.438
C2'
XC5
22
C8
C
0
1
N
N
S
55.299
6.185
10.970
-3.710
-2.698
0.133
C3'
XC5
23
C9
C
0
1
N
N
R
54.526
7.379
11.597
-2.554
-1.800
0.625
C4'
XC5
24
O10
O
0
1
N
N
N
55.415
8.490
11.322
-3.089
-0.459
0.591
O4'
XC5
25
O11
O
0
1
N
N
N
55.658
6.929
13.666
-0.255
-1.172
0.221
O5'
XC5
26
C10
C
0
1
N
N
N
54.369
7.197
13.112
-1.351
-1.918
-0.313
C5'
XC5
27
O12
O
0
1
N
N
N
54.474
5.035
10.690
-3.727
-3.932
0.854
O3'
XC5
28
H1
H
0
1
N
N
N
54.986
6.519
16.791
0.675
0.601
-1.824
H1
XC5
29
H2
H
0
1
N
N
N
56.817
3.898
15.296
1.955
0.843
0.740
H2
XC5
30
H3
H
0
1
N
N
N
57.014
4.443
13.596
2.451
-0.684
1.508
H3
XC5
31
H4
H
0
1
N
N
N
52.978
4.103
13.513
4.654
-2.057
0.269
H4
XC5
32
H5
H
0
1
N
N
N
53.667
3.119
17.294
8.066
1.777
1.983
H5
XC5
33
H6
H
0
1
N
N
N
56.375
0.721
17.405
6.164
3.264
-0.051
H6
XC5
34
H7
H
0
1
N
N
N
59.843
7.676
12.787
-7.219
2.957
1.872
H7
XC5
35
H8
H
0
1
N
N
N
57.425
7.601
12.388
-5.882
1.046
2.616
H8
XC5
36
H9
H
0
1
N
N
N
62.266
8.676
10.258
-7.472
3.960
-1.607
H9
XC5
37
H10
H
0
1
N
N
N
62.030
8.116
11.880
-7.947
4.287
-0.029
H10
XC5
38
H11
H
0
1
N
N
N
55.885
8.993
9.344
-4.450
-0.656
2.165
H11
XC5
39
H12
H
0
1
N
N
N
54.929
6.891
8.919
-5.623
-2.409
1.138
H12
XC5
40
H13
H
0
1
N
N
N
56.608
6.323
9.207
-5.521
-1.652
-0.483
H13
XC5
41
H14
H
0
1
N
N
N
56.171
5.926
11.588
-3.621
-2.882
-0.938
H14
XC5
42
H15
H
0
1
N
N
N
53.546
7.502
11.113
-2.269
-2.070
1.642
H15
XC5
43
H16
H
0
1
N
N
N
53.956
8.115
13.556
-1.065
-2.965
-0.408
H16
XC5
44
H17
H
0
1
N
N
N
53.693
6.354
13.318
-1.615
-1.523
-1.294
H17
XC5
45
H18
H
0
1
N
N
N
54.659
4.350
11.322
-4.469
-4.510
0.627
H18
XC5
46
doub
N
N
1
sing
N
N
2
sing
N
N
3
doub
N
N
4
sing
N
N
5
sing
N
N
6
sing
N
N
7
sing
N
N
8
sing
N
N
9
sing
N
N
10
sing
N
N
11
sing
N
N
12
sing
N
N
13
sing
N
N
14
sing
N
N
15
doub
N
N
16
doub
N
N
17
sing
N
N
18
sing
N
N
19
sing
N
N
20
sing
N
N
21
sing
N
N
22
sing
N
N
23
sing
N
N
24
doub
N
N
25
sing
N
N
26
doub
N
N
27
sing
N
N
28
sing
N
N
29
sing
N
N
30
sing
N
N
31
sing
N
N
32
sing
N
N
33
sing
N
N
34
sing
N
N
35
sing
N
N
36
sing
N
N
37
sing
N
N
38
sing
N
N
39
sing
N
N
40
sing
N
N
41
sing
N
N
42
sing
N
N
43
sing
N
N
44
sing
N
N
45
sing
N
N
46
sing
N
N
47
P(=O)(O)(CP(O)(OP(=O)(O)O)=O)OCC2C(CC(N1C=CC(=NC1=O)N)O2)O
InChI=1S/C10H18N3O12P3/c11-8-1-2-13(10(15)12-8)9-3-6(14)7(24-9)4-23-26(16,17)5-27(18,19)25-28(20,21)22/h1-2,6-7,9,14H,3-5H2,(H,16,17)(H,18,19)(H2,11,12,15)(H2,20,21,22)/t6-,7+,9+/m0/s1
YSCOIIOUWFAHFY-LKEWCRSYSA-N
NC1=NC(=O)N(C=C1)[C@H]2C[C@H](O)[C@@H](CO[P](O)(=O)C[P](O)(=O)O[P](O)(O)=O)O2
NC1=NC(=O)N(C=C1)[CH]2C[CH](O)[CH](CO[P](O)(=O)C[P](O)(=O)O[P](O)(O)=O)O2
C1[C@@H]([C@H](O[C@H]1N2C=CC(=NC2=O)N)COP(=O)(CP(=O)(O)OP(=O)(O)O)O)O
C1C(C(OC1N2C=CC(=NC2=O)N)COP(=O)(CP(=O)(O)OP(=O)(O)O)O)O
2'-deoxy-5'-O-[(S)-hydroxy{[(S)-hydroxy(phosphonooxy)phosphoryl]methyl}phosphoryl]cytidine
[(2~{R},3~{S},5~{R})-5-(4-azanyl-2-oxidanylidene-pyrimidin-1-yl)-3-oxidanyl-oxolan-2-yl]methoxy-[[oxidanyl(phosphonooxy)phosphoryl]methyl]phosphinic acid
RCSB
RCSB