data_XC8 # _chem_comp.id XC8 _chem_comp.name ;4'-fluoro-6-(trifluoromethyl)[1,1'-biphenyl]-2-yl 2-acetamido-2-deoxy-beta-D-galactopyranoside ; _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C21 H21 F4 N O6" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-10-30 _chem_comp.pdbx_modified_date 2024-02-09 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 459.388 _chem_comp.one_letter_code ? _chem_comp.three_letter_code XC8 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8USM _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal XC8 C11 C1 C 0 1 N N N N N N -8.231 9.979 -7.530 4.342 -2.537 1.234 C11 XC8 1 XC8 C10 C2 C 0 1 N N R N N N -7.147 10.535 -8.399 3.913 -1.491 0.204 C10 XC8 2 XC8 C01 C3 C 0 1 N N N N N N -2.210 14.500 -10.730 0.727 3.810 -2.140 C01 XC8 3 XC8 C02 C4 C 0 1 N N N N N N -3.073 13.920 -9.583 1.224 2.821 -1.118 C02 XC8 4 XC8 C05 C5 C 0 1 N N R N N N -4.887 12.227 -8.906 2.789 1.099 -0.392 C05 XC8 5 XC8 C06 C6 C 0 1 N N R N N N -4.738 10.739 -8.902 4.281 0.838 -0.617 C06 XC8 6 XC8 C08 C7 C 0 1 N N R N N N -5.754 10.193 -7.951 4.757 -0.226 0.378 C08 XC8 7 XC8 C14 C8 C 0 1 N N S N N N -6.318 12.697 -9.231 2.020 -0.217 -0.536 C14 XC8 8 XC8 C16 C9 C 0 1 Y N N N N N -7.444 14.745 -9.512 -0.208 -1.040 -0.461 C16 XC8 9 XC8 C17 C10 C 0 1 Y N N N N N -8.440 14.187 -10.270 0.287 -2.262 -0.884 C17 XC8 10 XC8 C18 C11 C 0 1 Y N N N N N -9.491 15.023 -10.776 -0.571 -3.330 -1.069 C18 XC8 11 XC8 C19 C12 C 0 1 Y N N N N N -9.496 16.413 -10.473 -1.926 -3.186 -0.834 C19 XC8 12 XC8 C20 C13 C 0 1 Y N N N N N -8.475 16.959 -9.694 -2.433 -1.974 -0.412 C20 XC8 13 XC8 C21 C14 C 0 1 N N N N N N -8.448 18.456 -9.356 -3.911 -1.822 -0.156 C21 XC8 14 XC8 C25 C15 C 0 1 Y N N N N N -7.451 16.135 -9.215 -1.578 -0.891 -0.222 C25 XC8 15 XC8 C26 C16 C 0 1 Y N N N N N -6.277 16.636 -8.335 -2.117 0.412 0.238 C26 XC8 16 XC8 C27 C17 C 0 1 Y N N N N N -6.422 16.666 -6.953 -2.989 1.134 -0.576 C27 XC8 17 XC8 C28 C18 C 0 1 Y N N N N N -5.351 17.099 -6.149 -3.487 2.346 -0.144 C28 XC8 18 XC8 C29 C19 C 0 1 Y N N N N N -4.141 17.484 -6.745 -3.123 2.846 1.095 C29 XC8 19 XC8 C31 C20 C 0 1 Y N N N N N -3.994 17.441 -8.146 -2.256 2.132 1.907 C31 XC8 20 XC8 C32 C21 C 0 1 Y N N N N N -5.053 17.013 -8.943 -1.758 0.916 1.487 C32 XC8 21 XC8 F22 F1 F 0 1 N N N N N N -8.535 18.647 -8.013 -4.556 -3.036 -0.414 F22 XC8 22 XC8 F23 F2 F 0 1 N N N N N N -9.549 19.041 -9.963 -4.118 -1.458 1.178 F23 XC8 23 XC8 F24 F3 F 0 1 N N N N N N -7.266 18.992 -9.817 -4.430 -0.831 -0.996 F24 XC8 24 XC8 F30 F4 F 0 1 N N N N N N -3.083 17.908 -5.987 -3.613 4.033 1.514 F30 XC8 25 XC8 N04 N1 N 0 1 N N N N N N -4.008 12.845 -9.934 2.305 2.062 -1.385 N04 XC8 26 XC8 O03 O1 O 0 1 N N N N N N -2.955 14.336 -8.446 0.652 2.707 -0.055 O03 XC8 27 XC8 O07 O2 O 0 1 N N N N N N -3.391 10.444 -8.468 5.015 2.047 -0.412 O07 XC8 28 XC8 O09 O3 O 0 1 N N N N N N -5.439 10.765 -6.673 4.609 0.267 1.711 O09 XC8 29 XC8 O12 O4 O 0 1 N N N N N N -8.382 10.729 -6.359 3.636 -3.756 0.998 O12 XC8 30 XC8 O13 O5 O 0 1 N N N N N N -7.326 12.042 -8.414 2.533 -1.171 0.396 O13 XC8 31 XC8 O15 O6 O 0 1 N N N N N N -6.359 14.038 -8.962 0.634 0.009 -0.273 O15 XC8 32 XC8 H111 H1 H 0 0 N N N N N N -9.179 9.992 -8.088 5.414 -2.714 1.147 H111 XC8 33 XC8 H112 H2 H 0 0 N N N N N N -7.978 8.943 -7.261 4.115 -2.174 2.237 H112 XC8 34 XC8 H101 H3 H 0 0 N N N N N N -7.288 10.158 -9.423 4.058 -1.889 -0.800 H101 XC8 35 XC8 H013 H4 H 0 0 N N N N N N -1.545 15.280 -10.331 1.215 4.772 -1.982 H013 XC8 36 XC8 H012 H5 H 0 0 N N N N N N -1.605 13.697 -11.176 0.958 3.446 -3.141 H012 XC8 37 XC8 H011 H6 H 0 0 N N N N N N -2.866 14.935 -11.498 -0.352 3.929 -2.036 H011 XC8 38 XC8 H051 H7 H 0 0 N N N N N N -4.610 12.617 -7.915 2.636 1.502 0.609 H051 XC8 39 XC8 H061 H8 H 0 0 N N N N N N -4.917 10.341 -9.912 4.440 0.483 -1.635 H061 XC8 40 XC8 H081 H9 H 0 0 N N N N N N -5.652 9.099 -7.906 5.805 -0.458 0.189 H081 XC8 41 XC8 H141 H10 H 0 0 N N N N N N -6.518 12.502 -10.295 2.140 -0.598 -1.550 H141 XC8 42 XC8 H171 H11 H 0 0 N N N N N N -8.434 13.129 -10.484 1.344 -2.381 -1.069 H171 XC8 43 XC8 H181 H12 H 0 0 N N N N N N -10.276 14.598 -11.385 -0.181 -4.282 -1.400 H181 XC8 44 XC8 H191 H13 H 0 0 N N N N N N -10.289 17.045 -10.845 -2.590 -4.025 -0.982 H191 XC8 45 XC8 H271 H14 H 0 0 N N N N N N -7.352 16.359 -6.498 -3.273 0.746 -1.543 H271 XC8 46 XC8 H281 H15 H 0 0 N N N N N N -5.461 17.135 -5.075 -4.163 2.906 -0.774 H281 XC8 47 XC8 H311 H16 H 0 0 N N N N N N -3.061 17.740 -8.601 -1.974 2.525 2.873 H311 XC8 48 XC8 H321 H17 H 0 0 N N N N N N -4.943 16.969 -10.016 -1.086 0.358 2.122 H321 XC8 49 XC8 H041 H18 H 0 0 N N N N N N -4.055 12.523 -10.880 2.763 2.152 -2.236 H041 XC8 50 XC8 H071 H19 H 0 0 N N N N N N -3.261 9.503 -8.454 5.969 1.954 -0.538 H071 XC8 51 XC8 H091 H20 H 0 0 N N N N N N -6.057 10.451 -6.024 4.888 -0.357 2.395 H091 XC8 52 XC8 H121 H21 H 0 0 N N N N N N -9.075 10.353 -5.829 3.859 -4.466 1.615 H121 XC8 53 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal XC8 C18 C19 DOUB Y N 1 XC8 C18 C17 SING Y N 2 XC8 C01 C02 SING N N 3 XC8 C19 C20 SING Y N 4 XC8 C17 C16 DOUB Y N 5 XC8 F23 C21 SING N N 6 XC8 N04 C02 SING N N 7 XC8 N04 C05 SING N N 8 XC8 F24 C21 SING N N 9 XC8 C20 C21 SING N N 10 XC8 C20 C25 DOUB Y N 11 XC8 C02 O03 DOUB N N 12 XC8 C16 C25 SING Y N 13 XC8 C16 O15 SING N N 14 XC8 C21 F22 SING N N 15 XC8 C14 O15 SING N N 16 XC8 C14 C05 SING N N 17 XC8 C14 O13 SING N N 18 XC8 C25 C26 SING N N 19 XC8 C32 C26 DOUB Y N 20 XC8 C32 C31 SING Y N 21 XC8 C05 C06 SING N N 22 XC8 C06 O07 SING N N 23 XC8 C06 C08 SING N N 24 XC8 O13 C10 SING N N 25 XC8 C10 C08 SING N N 26 XC8 C10 C11 SING N N 27 XC8 C26 C27 SING Y N 28 XC8 C31 C29 DOUB Y N 29 XC8 C08 O09 SING N N 30 XC8 C11 O12 SING N N 31 XC8 C27 C28 DOUB Y N 32 XC8 C29 C28 SING Y N 33 XC8 C29 F30 SING N N 34 XC8 C11 H111 SING N N 35 XC8 C11 H112 SING N N 36 XC8 C10 H101 SING N N 37 XC8 C01 H013 SING N N 38 XC8 C01 H012 SING N N 39 XC8 C01 H011 SING N N 40 XC8 C05 H051 SING N N 41 XC8 C06 H061 SING N N 42 XC8 C08 H081 SING N N 43 XC8 C14 H141 SING N N 44 XC8 C17 H171 SING N N 45 XC8 C18 H181 SING N N 46 XC8 C19 H191 SING N N 47 XC8 C27 H271 SING N N 48 XC8 C28 H281 SING N N 49 XC8 C31 H311 SING N N 50 XC8 C32 H321 SING N N 51 XC8 N04 H041 SING N N 52 XC8 O07 H071 SING N N 53 XC8 O09 H091 SING N N 54 XC8 O12 H121 SING N N 55 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor XC8 SMILES ACDLabs 12.01 "FC(F)(F)c1cccc(OC2OC(CO)C(O)C(O)C2NC(C)=O)c1c1ccc(F)cc1" XC8 InChI InChI 1.06 "InChI=1S/C21H21F4NO6/c1-10(28)26-17-19(30)18(29)15(9-27)32-20(17)31-14-4-2-3-13(21(23,24)25)16(14)11-5-7-12(22)8-6-11/h2-8,15,17-20,27,29-30H,9H2,1H3,(H,26,28)/t15-,17-,18+,19-,20-/m1/s1" XC8 InChIKey InChI 1.06 HRLDWJXNEKTIOQ-XIKSMUEASA-N XC8 SMILES_CANONICAL CACTVS 3.385 "CC(=O)N[C@@H]1[C@@H](O)[C@@H](O)[C@@H](CO)O[C@H]1Oc2cccc(c2c3ccc(F)cc3)C(F)(F)F" XC8 SMILES CACTVS 3.385 "CC(=O)N[CH]1[CH](O)[CH](O)[CH](CO)O[CH]1Oc2cccc(c2c3ccc(F)cc3)C(F)(F)F" XC8 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(=O)N[C@@H]1[C@H]([C@H]([C@H](O[C@H]1Oc2cccc(c2c3ccc(cc3)F)C(F)(F)F)CO)O)O" XC8 SMILES "OpenEye OEToolkits" 2.0.7 "CC(=O)NC1C(C(C(OC1Oc2cccc(c2c3ccc(cc3)F)C(F)(F)F)CO)O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier XC8 "SYSTEMATIC NAME" ACDLabs 12.01 ;4'-fluoro-6-(trifluoromethyl)[1,1'-biphenyl]-2-yl 2-acetamido-2-deoxy-beta-D-galactopyranoside ; XC8 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "~{N}-[(2~{S},3~{R},4~{R},5~{R},6~{R})-2-[2-(4-fluorophenyl)-3-(trifluoromethyl)phenoxy]-6-(hydroxymethyl)-4,5-bis(oxidanyl)oxan-3-yl]ethanamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site XC8 "Create component" 2023-10-30 RCSB XC8 "Initial release" 2024-02-14 RCSB #