data_XCK # _chem_comp.id XCK _chem_comp.name "N-{(1Z,2S)-1-imino-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}-N~2~-{[2-methyl-2-(phenylsulfanyl)propoxy]carbonyl}-L-leucinamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C24 H36 N4 O4 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-11-11 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 476.632 _chem_comp.one_letter_code ? _chem_comp.three_letter_code XCK _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8F46 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal XCK C02 C1 C 0 1 N N N N N N 10.953 24.061 25.766 -0.740 0.583 -0.318 C02 XCK 1 XCK C04 C2 C 0 1 N N S N N N 11.862 22.028 27.045 1.644 0.955 0.023 C04 XCK 2 XCK C05 C3 C 0 1 N N N N N N 12.945 21.699 28.108 1.803 2.477 0.020 C05 XCK 3 XCK C06 C4 C 0 1 N N N N N N 14.373 22.247 27.705 0.820 3.090 -0.980 C06 XCK 4 XCK C07 C5 C 0 1 N N N N N N 14.852 21.612 26.357 0.891 4.616 -0.894 C07 XCK 5 XCK C08 C6 C 0 1 N N N N N N 15.404 22.075 28.873 1.187 2.642 -2.396 C08 XCK 6 XCK C09 C7 C 0 1 N N N N N N 10.462 21.580 27.536 2.693 0.343 0.915 C09 XCK 7 XCK C11 C8 C 0 1 N N S N N N 8.637 19.752 27.490 5.020 -0.063 1.514 C11 XCK 8 XCK C12 C9 C 0 1 N N N N N N 7.669 19.675 26.309 6.307 -0.277 0.715 C12 XCK 9 XCK C13 C10 C 0 1 N N S N N N 7.331 21.069 25.661 6.042 -1.264 -0.424 C13 XCK 10 XCK C14 C11 C 0 1 N N N N N N 6.278 20.979 24.472 7.312 -1.529 -1.202 C14 XCK 11 XCK C16 C12 C 0 1 N N N N N N 5.392 22.533 25.896 6.326 -3.604 -0.866 C16 XCK 12 XCK C17 C13 C 0 1 N N N N N N 6.490 21.831 26.669 5.648 -2.649 0.141 C17 XCK 13 XCK C19 C14 C 0 1 N N N N N N 8.865 18.281 27.985 5.296 0.860 2.672 C19 XCK 14 XCK C23 C15 C 0 1 N N N N N N 9.742 26.082 24.811 -3.049 0.253 -0.823 C23 XCK 15 XCK C24 C16 C 0 1 N N N N N N 9.950 27.676 24.729 -4.351 -0.141 -0.122 C24 XCK 16 XCK C25 C17 C 0 1 N N N N N N 11.484 27.967 24.550 -4.202 -1.538 0.482 C25 XCK 17 XCK C26 C18 C 0 1 N N N N N N 9.416 28.264 26.025 -4.656 0.866 0.989 C26 XCK 18 XCK C28 C19 C 0 1 Y N N N N N 8.624 30.319 23.558 -7.088 -0.670 -0.365 C28 XCK 19 XCK C29 C20 C 0 1 Y N N N N N 7.303 30.768 23.775 -6.951 -0.862 1.005 C29 XCK 20 XCK C30 C21 C 0 1 Y N N N N N 7.026 32.139 23.996 -8.036 -1.269 1.755 C30 XCK 21 XCK C31 C22 C 0 1 Y N N N N N 8.077 33.077 24.005 -9.259 -1.487 1.146 C31 XCK 22 XCK C32 C23 C 0 1 Y N N N N N 9.398 32.631 23.791 -9.399 -1.297 -0.217 C32 XCK 23 XCK C33 C24 C 0 1 Y N N N N N 9.676 31.259 23.569 -8.318 -0.890 -0.974 C33 XCK 24 XCK N03 N1 N 0 1 N N N N N N 11.844 23.502 26.725 0.312 0.604 0.524 N03 XCK 25 XCK N10 N2 N 0 1 N N N N N N 9.963 20.284 27.064 4.000 0.533 0.647 N10 XCK 26 XCK N15 N3 N 0 1 N N N N N N 5.178 21.795 24.633 7.449 -2.846 -1.430 N15 XCK 27 XCK N20 N4 N 0 1 N N N N N N 8.161 17.796 28.933 4.667 1.970 2.770 N20 XCK 28 XCK O01 O1 O 0 1 N N N N N N 10.418 23.333 24.953 -0.584 0.855 -1.492 O01 XCK 29 XCK O18 O2 O 0 1 N N N N N N 6.486 20.225 23.557 8.094 -0.676 -1.566 O18 XCK 30 XCK O21 O3 O 0 1 N N N N N N 9.759 22.313 28.198 2.361 -0.322 1.874 O21 XCK 31 XCK O22 O4 O 0 1 N N N N N N 10.653 25.438 25.731 -1.962 0.255 0.140 O22 XCK 32 XCK S27 S1 S 0 1 N N N N N N 9.003 28.505 23.269 -5.708 -0.144 -1.325 S27 XCK 33 XCK H1 H1 H 0 1 N N N N N N 12.100 21.470 26.128 1.763 0.575 -0.991 H1 XCK 34 XCK H2 H2 H 0 1 N N N N N N 12.650 22.153 29.065 1.597 2.866 1.017 H2 XCK 35 XCK H3 H3 H 0 1 N N N N N N 13.006 20.607 28.224 2.822 2.735 -0.267 H3 XCK 36 XCK H4 H4 H 0 1 N N N N N N 14.262 23.327 27.531 -0.191 2.759 -0.744 H4 XCK 37 XCK H5 H5 H 0 1 N N N N N N 15.845 22.007 26.097 1.903 4.947 -1.129 H5 XCK 38 XCK H6 H6 H 0 1 N N N N N N 14.910 20.519 26.467 0.191 5.053 -1.606 H6 XCK 39 XCK H7 H7 H 0 1 N N N N N N 14.138 21.863 25.559 0.630 4.936 0.115 H7 XCK 40 XCK H8 H8 H 0 1 N N N N N N 15.006 22.542 29.786 1.137 1.554 -2.457 H8 XCK 41 XCK H9 H9 H 0 1 N N N N N N 15.577 21.004 29.055 0.487 3.078 -3.108 H9 XCK 42 XCK H10 H10 H 0 1 N N N N N N 16.353 22.558 28.598 2.199 2.972 -2.631 H10 XCK 43 XCK H11 H11 H 0 1 N N N N N N 8.209 20.360 28.301 4.662 -1.021 1.890 H11 XCK 44 XCK H12 H12 H 0 1 N N N N N N 6.731 19.221 26.661 6.640 0.675 0.300 H12 XCK 45 XCK H13 H13 H 0 1 N N N N N N 8.118 19.035 25.536 7.080 -0.678 1.371 H13 XCK 46 XCK H14 H14 H 0 1 N N N N N N 8.238 21.615 25.362 5.261 -0.885 -1.083 H14 XCK 47 XCK H15 H15 H 0 1 N N N N N N 5.693 23.568 25.677 6.691 -4.495 -0.354 H15 XCK 48 XCK H16 H16 H 0 1 N N N N N N 4.464 22.538 26.487 5.624 -3.883 -1.652 H16 XCK 49 XCK H17 H17 H 0 1 N N N N N N 6.051 21.134 27.398 6.051 -2.790 1.144 H17 XCK 50 XCK H18 H18 H 0 1 N N N N N N 7.111 22.570 27.196 4.566 -2.779 0.135 H18 XCK 51 XCK H19 H19 H 0 1 N Y N N N N 9.626 17.672 27.519 6.025 0.585 3.420 H19 XCK 52 XCK H20 H20 H 0 1 N N N N N N 8.712 25.880 25.139 -2.831 -0.464 -1.614 H20 XCK 53 XCK H21 H21 H 0 1 N N N N N N 9.898 25.657 23.809 -3.155 1.249 -1.253 H21 XCK 54 XCK H22 H22 H 0 1 N N N N N N 12.045 27.502 25.374 -3.539 -1.492 1.346 H22 XCK 55 XCK H23 H23 H 0 1 N N N N N N 11.827 27.549 23.592 -5.180 -1.905 0.795 H23 XCK 56 XCK H24 H24 H 0 1 N N N N N N 11.654 29.054 24.558 -3.782 -2.214 -0.263 H24 XCK 57 XCK H25 H25 H 0 1 N N N N N N 9.940 27.808 26.878 -4.489 1.877 0.619 H25 XCK 58 XCK H26 H26 H 0 1 N N N N N N 9.583 29.351 26.031 -5.696 0.760 1.299 H26 XCK 59 XCK H27 H27 H 0 1 N N N N N N 8.338 28.058 26.104 -4.003 0.677 1.840 H27 XCK 60 XCK H28 H28 H 0 1 N N N N N N 6.492 30.055 23.772 -5.997 -0.693 1.482 H28 XCK 61 XCK H29 H29 H 0 1 N N N N N N 6.009 32.465 24.158 -7.931 -1.418 2.820 H29 XCK 62 XCK H30 H30 H 0 1 N N N N N N 7.874 34.124 24.174 -10.105 -1.806 1.735 H30 XCK 63 XCK H31 H31 H 0 1 N N N N N N 10.209 33.345 23.796 -10.354 -1.468 -0.690 H31 XCK 64 XCK H32 H32 H 0 1 N N N N N N 10.693 30.933 23.408 -8.428 -0.741 -2.038 H32 XCK 65 XCK H33 H33 H 0 1 N N N N N N 12.480 24.107 27.203 0.188 0.388 1.461 H33 XCK 66 XCK H34 H34 H 0 1 N N N N N N 10.527 19.743 26.440 4.266 1.064 -0.120 H34 XCK 67 XCK H35 H35 H 0 1 N N N N N N 4.393 21.872 24.019 8.193 -3.245 -1.907 H35 XCK 68 XCK H36 H36 H 0 1 N N N N N N 8.415 16.852 29.143 4.844 2.564 3.516 H36 XCK 69 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal XCK S27 C28 SING N N 1 XCK S27 C24 SING N N 2 XCK O18 C14 DOUB N N 3 XCK C28 C33 DOUB Y N 4 XCK C28 C29 SING Y N 5 XCK C33 C32 SING Y N 6 XCK C29 C30 DOUB Y N 7 XCK C32 C31 DOUB Y N 8 XCK C30 C31 SING Y N 9 XCK C14 N15 SING N N 10 XCK C14 C13 SING N N 11 XCK C25 C24 SING N N 12 XCK N15 C16 SING N N 13 XCK C24 C23 SING N N 14 XCK C24 C26 SING N N 15 XCK C23 O22 SING N N 16 XCK O01 C02 DOUB N N 17 XCK C13 C12 SING N N 18 XCK C13 C17 SING N N 19 XCK O22 C02 SING N N 20 XCK C02 N03 SING N N 21 XCK C16 C17 SING N N 22 XCK C12 C11 SING N N 23 XCK C07 C06 SING N N 24 XCK N03 C04 SING N N 25 XCK C04 C09 SING N N 26 XCK C04 C05 SING N N 27 XCK N10 C11 SING N N 28 XCK N10 C09 SING N N 29 XCK C11 C19 SING N N 30 XCK C09 O21 DOUB N N 31 XCK C06 C05 SING N N 32 XCK C06 C08 SING N N 33 XCK C19 N20 DOUB N N 34 XCK C04 H1 SING N N 35 XCK C05 H2 SING N N 36 XCK C05 H3 SING N N 37 XCK C06 H4 SING N N 38 XCK C07 H5 SING N N 39 XCK C07 H6 SING N N 40 XCK C07 H7 SING N N 41 XCK C08 H8 SING N N 42 XCK C08 H9 SING N N 43 XCK C08 H10 SING N N 44 XCK C11 H11 SING N N 45 XCK C12 H12 SING N N 46 XCK C12 H13 SING N N 47 XCK C13 H14 SING N N 48 XCK C16 H15 SING N N 49 XCK C16 H16 SING N N 50 XCK C17 H17 SING N N 51 XCK C17 H18 SING N N 52 XCK C19 H19 SING N N 53 XCK C23 H20 SING N N 54 XCK C23 H21 SING N N 55 XCK C25 H22 SING N N 56 XCK C25 H23 SING N N 57 XCK C25 H24 SING N N 58 XCK C26 H25 SING N N 59 XCK C26 H26 SING N N 60 XCK C26 H27 SING N N 61 XCK C29 H28 SING N N 62 XCK C30 H29 SING N N 63 XCK C31 H30 SING N N 64 XCK C32 H31 SING N N 65 XCK C33 H32 SING N N 66 XCK N03 H33 SING N N 67 XCK N10 H34 SING N N 68 XCK N15 H35 SING N N 69 XCK N20 H36 SING N N 70 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor XCK SMILES ACDLabs 12.01 "CC(C)CC(NC(=O)OCC(C)(C)Sc1ccccc1)C(=O)NC(CC1CCNC1=O)C=N" XCK InChI InChI 1.06 "InChI=1S/C24H36N4O4S/c1-16(2)12-20(22(30)27-18(14-25)13-17-10-11-26-21(17)29)28-23(31)32-15-24(3,4)33-19-8-6-5-7-9-19/h5-9,14,16-18,20,25H,10-13,15H2,1-4H3,(H,26,29)(H,27,30)(H,28,31)/b25-14-/t17-,18-,20-/m0/s1" XCK InChIKey InChI 1.06 ZIDTZUSIKUZLIR-WNPRXXRGSA-N XCK SMILES_CANONICAL CACTVS 3.385 "CC(C)C[C@H](NC(=O)OCC(C)(C)Sc1ccccc1)C(=O)N[C@@H](C[C@@H]2CCNC2=O)C=N" XCK SMILES CACTVS 3.385 "CC(C)C[CH](NC(=O)OCC(C)(C)Sc1ccccc1)C(=O)N[CH](C[CH]2CCNC2=O)C=N" XCK SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "[H]/N=C\[C@H](C[C@@H]1CCNC1=O)NC(=O)[C@H](CC(C)C)NC(=O)OCC(C)(C)Sc2ccccc2" XCK SMILES "OpenEye OEToolkits" 2.0.7 "CC(C)CC(C(=O)NC(CC1CCNC1=O)C=N)NC(=O)OCC(C)(C)Sc2ccccc2" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier XCK "SYSTEMATIC NAME" ACDLabs 12.01 "N-{(1Z,2S)-1-imino-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}-N~2~-{[2-methyl-2-(phenylsulfanyl)propoxy]carbonyl}-L-leucinamide" XCK "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2-methyl-2-phenylsulfanyl-propyl) ~{N}-[(2~{S})-1-[[(2~{S})-1-azanylidene-3-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]propan-2-yl]amino]-4-methyl-1-oxidanylidene-pentan-2-yl]carbamate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site XCK "Create component" 2022-11-11 RCSB XCK "Initial release" 2022-11-23 RCSB XCK "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id XCK _pdbx_chem_comp_pcm.modified_residue_id CYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C19 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #