data_XCS # _chem_comp.id XCS _chem_comp.name "(1R)-1-(4-AMINO-6-METHYL-2-OXO-1,2-DIHYDROQUINAZOLIN-8-YL)-1,4-ANHYDRO-2-DEOXY-5-O-PHOSPHONO-D-ERYTHRO-PENTITOL" _chem_comp.type "DNA LINKING" _chem_comp.pdbx_type ATOMN _chem_comp.formula "C14 H18 N3 O7 P" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2006-09-26 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 371.282 _chem_comp.one_letter_code N _chem_comp.three_letter_code XCS _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 2ICZ _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal XCS P P P 0 1 N N N -0.698 -8.769 6.665 0.240 4.324 -3.132 P XCS 1 XCS OP2 O2P O 0 1 N N N -1.455 -7.897 7.592 1.041 5.526 -3.538 OP2 XCS 2 XCS C6 C6 C 0 1 Y N N 0.750 -3.645 2.129 2.653 0.387 2.361 C6 XCS 3 XCS C2 C2 C 0 1 N N N 1.927 -3.178 0.082 3.663 -1.514 3.498 C2 XCS 4 XCS O2 O2 O 0 1 N N N 2.952 -3.269 -0.590 4.105 -2.663 3.444 O2 XCS 5 XCS N3 N3 N 0 1 N N N 0.821 -2.526 -0.401 3.652 -0.802 4.681 N3 XCS 6 XCS C4 C4 C 0 1 N N N -0.301 -2.418 0.327 3.187 0.418 4.756 C4 XCS 7 XCS N4 N4 N 0 1 N N N -1.336 -1.777 -0.214 3.203 1.075 5.963 N4 XCS 8 XCS C5 C5 C 0 1 Y N N -0.378 -2.979 1.635 2.641 1.105 3.554 C5 XCS 9 XCS OP1 O1P O 0 1 N N N -0.266 -10.114 7.106 -0.865 3.843 -4.211 OP1 XCS 10 XCS "O5'" "O5'" O 0 1 N N N 0.604 -7.959 6.166 1.106 2.980 -2.877 "O5'" XCS 11 XCS "C5'" "C5'" C 0 1 N N N 1.136 -8.170 4.853 0.425 1.800 -2.490 "C5'" XCS 12 XCS "C4'" "C4'" C 0 1 N N R 2.240 -7.168 4.509 1.445 0.683 -2.312 "C4'" XCS 13 XCS "O4'" "O4'" O 0 1 N N N 1.759 -6.280 3.490 2.346 1.070 -1.255 "O4'" XCS 14 XCS "C1'" "C1'" C 0 1 N N R 1.896 -4.907 3.875 2.161 0.197 -0.125 "C1'" XCS 15 XCS ND ND N 0 1 N N N 1.896 -3.746 1.360 3.164 -0.912 2.353 ND XCS 16 XCS CP CP C 0 1 Y N N -1.554 -2.862 2.401 2.131 2.406 3.571 CP XCS 17 XCS CD CD C 0 1 Y N N -0.468 -4.101 4.184 1.653 2.247 1.201 CD XCS 18 XCS C8 C8 C 0 1 Y N N 0.732 -4.226 3.422 2.161 0.950 1.182 C8 XCS 19 XCS C7 C7 C 0 1 Y N N -1.591 -3.425 3.673 1.638 2.973 2.392 C7 XCS 20 XCS C7A C7A C 0 1 N N N -2.858 -3.309 4.517 1.094 4.363 2.408 C7A XCS 21 XCS "C2'" "C2'" C 0 1 N N N 1.982 -4.943 5.406 0.863 -0.564 -0.374 "C2'" XCS 22 XCS "C3'" "C3'" C 0 1 N N S 2.683 -6.270 5.662 0.810 -0.632 -1.883 "C3'" XCS 23 XCS "O3'" "O3'" O 0 1 N N N 4.085 -6.043 5.509 1.597 -1.728 -2.344 "O3'" XCS 24 XCS OP3 O3P O 0 1 N Y N -1.556 -8.933 5.309 -0.617 4.492 -1.771 OP3 XCS 25 XCS HO3P HO3P H 0 0 N N N -2.481 -8.965 5.521 -1.179 5.288 -1.659 HO3P XCS 26 XCS HN41 1HN4 H 0 0 N N N -2.105 -1.766 0.425 2.353 1.463 6.294 HN41 XCS 27 XCS HN42 2HN4 H 0 0 N N N -1.343 -1.367 -1.126 4.065 1.134 6.451 HN42 XCS 28 XCS HO1P HO1P H 0 0 N N N -0.173 -10.681 6.350 -1.466 4.510 -4.604 HO1P XCS 29 XCS "H5'1" "1H5'" H 0 0 N N N 0.321 -8.058 4.123 -0.100 1.980 -1.551 "H5'1" XCS 30 XCS "H5'2" "2H5'" H 0 0 N N N 1.572 -9.179 4.822 -0.294 1.530 -3.265 "H5'2" XCS 31 XCS "H4'" "H4'" H 0 1 N N N 3.098 -7.786 4.207 2.032 0.577 -3.231 "H4'" XCS 32 XCS "H1'" "H1'" H 0 1 N N N 2.773 -4.393 3.455 3.010 -0.495 -0.113 "H1'" XCS 33 XCS HND HND H 0 1 N N N 2.699 -4.223 1.717 3.174 -1.438 1.485 HND XCS 34 XCS HP HP H 0 1 N N N -2.415 -2.343 2.007 2.106 2.997 4.481 HP XCS 35 XCS HD HD H 0 1 N N N -0.515 -4.534 5.172 1.268 2.696 0.288 HD XCS 36 XCS H7A1 1H7A H 0 0 N N N -2.588 -3.281 5.583 1.688 4.996 3.078 H7A1 XCS 37 XCS H7A2 2H7A H 0 0 N N N -3.393 -2.386 4.250 1.109 4.806 1.405 H7A2 XCS 38 XCS H7A3 3H7A H 0 0 N N N -3.506 -4.177 4.326 0.051 4.377 2.747 H7A3 XCS 39 XCS "H2'1" "1H2'" H 0 0 N N N 2.554 -4.093 5.805 0.867 -1.543 0.116 "H2'1" XCS 40 XCS "H2'2" "2H2'" H 0 0 N N N 1.003 -4.863 5.901 0.004 0.007 -0.001 "H2'2" XCS 41 XCS "H3'" "H3'" H 0 1 N N N 2.461 -6.695 6.652 -0.203 -0.773 -2.272 "H3'" XCS 42 XCS "HO3'" H3T H 0 0 N Y N 4.299 -5.993 4.585 2.523 -1.456 -2.262 "HO3'" XCS 43 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal XCS P OP3 SING N N 1 XCS P "O5'" SING N N 2 XCS P OP1 SING N N 3 XCS P OP2 DOUB N N 4 XCS C6 ND SING N N 5 XCS C6 C5 DOUB Y N 6 XCS C6 C8 SING Y N 7 XCS C2 O2 DOUB N N 8 XCS C2 N3 SING N N 9 XCS C2 ND SING N N 10 XCS N3 C4 DOUB N N 11 XCS C4 N4 SING N N 12 XCS C4 C5 SING N N 13 XCS N4 HN41 SING N N 14 XCS N4 HN42 SING N N 15 XCS C5 CP SING Y N 16 XCS OP1 HO1P SING N N 17 XCS "O5'" "C5'" SING N N 18 XCS "C5'" "C4'" SING N N 19 XCS "C5'" "H5'1" SING N N 20 XCS "C5'" "H5'2" SING N N 21 XCS "C4'" "O4'" SING N N 22 XCS "C4'" "C3'" SING N N 23 XCS "C4'" "H4'" SING N N 24 XCS "O4'" "C1'" SING N N 25 XCS "C1'" C8 SING N N 26 XCS "C1'" "C2'" SING N N 27 XCS "C1'" "H1'" SING N N 28 XCS ND HND SING N N 29 XCS CP C7 DOUB Y N 30 XCS CP HP SING N N 31 XCS CD C8 DOUB Y N 32 XCS CD C7 SING Y N 33 XCS CD HD SING N N 34 XCS C7 C7A SING N N 35 XCS C7A H7A1 SING N N 36 XCS C7A H7A2 SING N N 37 XCS C7A H7A3 SING N N 38 XCS "C2'" "C3'" SING N N 39 XCS "C2'" "H2'1" SING N N 40 XCS "C2'" "H2'2" SING N N 41 XCS "C3'" "O3'" SING N N 42 XCS "C3'" "H3'" SING N N 43 XCS "O3'" "HO3'" SING N N 44 XCS OP3 HO3P SING N N 45 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor XCS SMILES ACDLabs 10.04 "O=C2N=C(N)c1cc(cc(c1N2)C3OC(COP(=O)(O)O)C(O)C3)C" XCS SMILES_CANONICAL CACTVS 3.341 "Cc1cc([C@H]2C[C@H](O)[C@@H](CO[P](O)(O)=O)O2)c3NC(=O)N=C(N)c3c1" XCS SMILES CACTVS 3.341 "Cc1cc([CH]2C[CH](O)[CH](CO[P](O)(O)=O)O2)c3NC(=O)N=C(N)c3c1" XCS SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "Cc1cc(c2c(c1)C(=NC(=O)N2)N)[C@H]3C[C@@H]([C@H](O3)COP(=O)(O)O)O" XCS SMILES "OpenEye OEToolkits" 1.5.0 "Cc1cc(c2c(c1)C(=NC(=O)N2)N)C3CC(C(O3)COP(=O)(O)O)O" XCS InChI InChI 1.03 "InChI=1S/C14H18N3O7P/c1-6-2-7(12-8(3-6)13(15)17-14(19)16-12)10-4-9(18)11(24-10)5-23-25(20,21)22/h2-3,9-11,18H,4-5H2,1H3,(H2,20,21,22)(H3,15,16,17,19)/t9-,10+,11+/m0/s1" XCS InChIKey InChI 1.03 LWUTWCSYDSLCGB-HBNTYKKESA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier XCS "SYSTEMATIC NAME" ACDLabs 10.04 "(1R)-1-(4-amino-6-methyl-2-oxo-1,2-dihydroquinazolin-8-yl)-1,4-anhydro-2-deoxy-5-O-phosphono-D-erythro-pentitol" XCS "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(2R,3S,5R)-5-(4-amino-6-methyl-2-oxo-1H-quinazolin-8-yl)-3-hydroxy-oxolan-2-yl]methyl dihydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site XCS "Create component" 2006-09-26 RCSB XCS "Modify descriptor" 2011-06-04 RCSB #