data_XD9 # _chem_comp.id XD9 _chem_comp.name "(4R,6R,7S)-4,6,7-TRIHYDROXY-2-[(1E)-PROP-1-EN-1-YL]-4,5,6,7-TETRAHYDRO-1-BENZOTHIOPHENE-4-CARBOXYLIC ACID" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C12 H14 O5 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2010-04-30 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 270.302 _chem_comp.one_letter_code ? _chem_comp.three_letter_code XD9 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 2XD9 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal XD9 CAA CAA C 0 1 N N N -18.914 23.335 1.651 5.927 0.237 0.016 CAA XD9 1 XD9 CAG CAG C 0 1 N N N -17.858 24.470 1.788 4.496 -0.230 -0.064 CAG XD9 2 XD9 CAH CAH C 0 1 N N N -16.505 24.165 1.773 3.504 0.630 0.143 CAH XD9 3 XD9 CAM CAM C 0 1 Y N N -15.497 25.120 1.875 2.107 0.175 0.064 CAM XD9 4 XD9 CAI CAI C 0 1 Y N N -14.162 24.857 1.861 1.025 0.951 0.255 CAI XD9 5 XD9 SAK SAK S 0 1 Y N N -15.771 26.802 2.073 1.594 -1.466 -0.300 SAK XD9 6 XD9 CAO CAO C 0 1 Y N N -14.091 27.153 2.070 -0.097 -1.003 -0.166 CAO XD9 7 XD9 CAN CAN C 0 1 Y N N -13.344 25.963 1.968 -0.198 0.309 0.131 CAN XD9 8 XD9 CAR CAR C 0 1 N N R -11.774 26.033 1.955 -1.536 1.015 0.309 CAR XD9 9 XD9 CAL CAL C 0 1 N N N -11.292 24.854 1.073 -1.497 2.354 -0.379 CAL XD9 10 XD9 OAC OAC O 0 1 N N N -11.069 25.007 -0.133 -0.996 3.423 0.260 OAC XD9 11 XD9 OAB OAB O 0 1 N N N -11.176 23.783 1.640 -1.917 2.466 -1.507 OAB XD9 12 XD9 OAF OAF O 0 1 N N N -11.120 25.908 3.242 -1.798 1.199 1.702 OAF XD9 13 XD9 CAJ CAJ C 0 1 N N N -11.346 27.394 1.351 -2.635 0.150 -0.312 CAJ XD9 14 XD9 CAP CAP C 0 1 N N R -11.952 28.546 2.213 -2.526 -1.277 0.232 CAP XD9 15 XD9 OAD OAD O 0 1 N N N -11.534 29.818 1.692 -3.683 -2.024 -0.147 OAD XD9 16 XD9 CAQ CAQ C 0 1 N N S -13.502 28.549 2.129 -1.275 -1.937 -0.358 CAQ XD9 17 XD9 OAE OAE O 0 1 N N N -14.239 29.364 3.068 -1.021 -3.172 0.313 OAE XD9 18 XD9 HAA1 HAA1 H 0 0 N N N -19.163 23.191 0.589 6.125 0.632 1.013 HAA1 XD9 19 XD9 HAA2 HAA2 H 0 0 N N N -18.503 22.401 2.061 6.595 -0.602 -0.181 HAA2 XD9 20 XD9 HAA3 HAA3 H 0 0 N N N -19.822 23.611 2.206 6.097 1.018 -0.725 HAA3 XD9 21 XD9 HAG HAG H 0 1 N N N -18.179 25.496 1.895 4.277 -1.263 -0.291 HAG XD9 22 XD9 HAH HAH H 0 1 N N N -16.217 23.128 1.677 3.723 1.663 0.369 HAH XD9 23 XD9 HAI HAI H 0 1 N N N -13.771 23.854 1.772 1.103 2.003 0.488 HAI XD9 24 XD9 HAQ HAQ H 0 1 N N N -13.647 29.067 1.169 -1.425 -2.121 -1.422 HAQ XD9 25 XD9 HAF HAF H 0 1 N N N -10.179 25.881 3.118 -1.133 1.731 2.160 HAF XD9 26 XD9 HAJ1 HAJ1 H 0 0 N N N -10.249 27.470 1.352 -3.611 0.563 -0.056 HAJ1 XD9 27 XD9 HAJ2 HAJ2 H 0 0 N N N -11.712 27.473 0.317 -2.519 0.137 -1.395 HAJ2 XD9 28 XD9 HAC HAC H 0 1 N N N -10.805 24.178 -0.514 -0.992 4.261 -0.223 HAC XD9 29 XD9 HAP HAP H 0 1 N N N -11.611 28.387 3.247 -2.450 -1.248 1.319 HAP XD9 30 XD9 HAD HAD H 0 1 N N N -11.442 30.438 2.406 -3.681 -2.939 0.165 HAD XD9 31 XD9 HAE HAE H 0 1 N N N -14.401 28.867 3.861 -0.235 -3.638 -0.003 HAE XD9 32 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal XD9 CAA CAG SING N N 1 XD9 CAG CAH DOUB N N 2 XD9 CAH CAM SING N N 3 XD9 CAM CAI DOUB Y N 4 XD9 CAM SAK SING Y E 5 XD9 CAI CAN SING Y N 6 XD9 SAK CAO SING Y N 7 XD9 CAO CAN DOUB Y N 8 XD9 CAO CAQ SING N N 9 XD9 CAN CAR SING N N 10 XD9 CAR CAL SING N N 11 XD9 CAR OAF SING N N 12 XD9 CAR CAJ SING N N 13 XD9 CAL OAC SING N N 14 XD9 CAL OAB DOUB N N 15 XD9 CAJ CAP SING N N 16 XD9 CAP OAD SING N N 17 XD9 CAP CAQ SING N N 18 XD9 CAQ OAE SING N N 19 XD9 CAA HAA1 SING N N 20 XD9 CAA HAA2 SING N N 21 XD9 CAA HAA3 SING N N 22 XD9 CAG HAG SING N N 23 XD9 CAH HAH SING N N 24 XD9 CAI HAI SING N N 25 XD9 CAQ HAQ SING N N 26 XD9 OAF HAF SING N N 27 XD9 CAJ HAJ1 SING N N 28 XD9 CAJ HAJ2 SING N N 29 XD9 OAC HAC SING N N 30 XD9 CAP HAP SING N N 31 XD9 OAD HAD SING N N 32 XD9 OAE HAE SING N N 33 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor XD9 SMILES ACDLabs 10.04 "O=C(O)C2(O)c1c(sc(c1)/C=C/C)C(O)C(O)C2" XD9 SMILES_CANONICAL CACTVS 3.352 "C\C=C\c1sc2[C@@H](O)[C@H](O)C[C@](O)(C(O)=O)c2c1" XD9 SMILES CACTVS 3.352 "CC=Cc1sc2[CH](O)[CH](O)C[C](O)(C(O)=O)c2c1" XD9 SMILES_CANONICAL "OpenEye OEToolkits" 1.6.1 "C\C=C\c1cc2c(s1)[C@H]([C@@H](C[C@@]2(C(=O)O)O)O)O" XD9 SMILES "OpenEye OEToolkits" 1.6.1 "CC=Cc1cc2c(s1)C(C(CC2(C(=O)O)O)O)O" XD9 InChI InChI 1.03 "InChI=1S/C12H14O5S/c1-2-3-6-4-7-10(18-6)9(14)8(13)5-12(7,17)11(15)16/h2-4,8-9,13-14,17H,5H2,1H3,(H,15,16)/b3-2+/t8-,9+,12-/m1/s1" XD9 InChIKey InChI 1.03 XBFFFFBWIVSOII-PJMUFDJCSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier XD9 "SYSTEMATIC NAME" ACDLabs 10.04 "(4R,6R,7S)-4,6,7-trihydroxy-2-[(1E)-prop-1-en-1-yl]-4,5,6,7-tetrahydro-1-benzothiophene-4-carboxylic acid" XD9 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.6.1 "(4R,6R,7S)-4,6,7-trihydroxy-2-[(E)-prop-1-enyl]-6,7-dihydro-5H-1-benzothiophene-4-carboxylic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site XD9 "Create component" 2010-04-30 EBI XD9 "Modify aromatic_flag" 2011-06-04 RCSB XD9 "Modify descriptor" 2011-06-04 RCSB #