data_XDC # _chem_comp.id XDC _chem_comp.name Phosphocreatine _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C4 H10 N3 O5 P" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "N-methyl-N-(N'-phosphonocarbamimidoyl)glycine" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-10-30 _chem_comp.pdbx_modified_date 2026-04-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 211.113 _chem_comp.one_letter_code ? _chem_comp.three_letter_code XDC _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8US5 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal XDC C1 C1 C 0 1 N N N N N N -22.037 -1.836 -6.725 -0.692 -1.117 -1.901 C1 XDC 1 XDC CA C2 C 0 1 N N N N N N -24.036 -1.493 -5.324 -1.245 0.794 -0.326 CA XDC 2 XDC C C3 C 0 1 N N N N N N -24.279 -2.939 -5.652 -2.688 0.625 0.073 C XDC 3 XDC C4 C4 C 0 1 N N N N N N -23.124 0.363 -6.549 -0.043 -1.199 0.470 C4 XDC 4 XDC N N1 N 0 1 N N N N N N -23.044 -0.922 -6.210 -0.647 -0.522 -0.563 N XDC 5 XDC N2 N2 N 0 1 N N N N N N -22.253 0.882 -7.354 1.192 -0.932 0.790 N2 XDC 6 XDC N3 N3 N 0 1 N N N N N N -24.153 1.085 -6.113 -0.742 -2.156 1.167 N3 XDC 7 XDC O O1 O 0 1 N N N N N N -23.378 -3.745 -5.359 -3.168 -0.481 0.152 O XDC 8 XDC OXT O2 O 0 1 N N N N N N -25.363 -3.220 -6.188 -3.441 1.704 0.341 OXT XDC 9 XDC O3 O3 O 0 1 N N N N N N -19.864 -0.250 -6.813 1.636 0.331 -1.379 O3 XDC 10 XDC O4 O4 O 0 1 N N N N N N -20.153 1.332 -8.515 1.536 1.699 0.741 O4 XDC 11 XDC O5 O5 O 0 1 N N N N N N -20.538 2.330 -6.393 3.568 0.110 0.230 O5 XDC 12 XDC P1 P1 P 0 1 N N N N N N -20.720 1.001 -7.211 1.979 0.308 0.061 P1 XDC 13 XDC H2 H1 H 0 1 N N N N N N -21.345 -1.288 -7.381 0.143 -0.744 -2.493 H2 XDC 14 XDC H1 H2 H 0 1 N N N N N N -21.477 -2.274 -5.886 -0.623 -2.202 -1.818 H1 XDC 15 XDC H3 H3 H 0 1 N N N N N N -22.528 -2.637 -7.297 -1.631 -0.849 -2.386 H3 XDC 16 XDC HA3 H4 H 0 1 N N N N N N -23.680 -1.414 -4.286 -1.187 1.389 -1.237 HA3 XDC 17 XDC HA2 H5 H 0 1 N N N N N N -24.978 -0.936 -5.432 -0.704 1.301 0.473 HA2 XDC 18 XDC H7 H6 H 0 1 N N N N N N -24.257 2.035 -6.407 -0.316 -2.634 1.896 H7 XDC 19 XDC H6 H7 H 0 1 N N N N N N -24.822 0.678 -5.491 -1.661 -2.354 0.929 H6 XDC 20 XDC HXT H8 H 0 1 N N N N N N -25.406 -4.156 -6.345 -4.361 1.546 0.593 HXT XDC 21 XDC H9 H9 H 0 1 N N N N N N -19.462 0.715 -8.726 1.731 1.754 1.686 H9 XDC 22 XDC H10 H10 H 0 1 N N N N N N -19.887 2.198 -5.714 4.097 0.809 -0.178 H10 XDC 23 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal XDC C1 N SING N N 1 XDC N CA SING N N 2 XDC N C4 SING N N 3 XDC CA C SING N N 4 XDC C O DOUB N N 5 XDC C OXT SING N N 6 XDC C4 N2 DOUB N N 7 XDC C4 N3 SING N N 8 XDC N2 P1 SING N N 9 XDC P1 O3 DOUB N N 10 XDC P1 O4 SING N N 11 XDC P1 O5 SING N N 12 XDC C1 H2 SING N N 13 XDC C1 H1 SING N N 14 XDC C1 H3 SING N N 15 XDC CA HA3 SING N N 16 XDC CA HA2 SING N N 17 XDC N3 H7 SING N N 18 XDC N3 H6 SING N N 19 XDC OXT HXT SING N N 20 XDC O4 H9 SING N N 21 XDC O5 H10 SING N N 22 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor XDC SMILES ACDLabs 12.01 "N/C(=N/P(=O)(O)O)N(C)CC(=O)O" XDC InChI InChI 1.06 "InChI=1S/C4H10N3O5P/c1-7(2-3(8)9)4(5)6-13(10,11)12/h2H2,1H3,(H,8,9)(H4,5,6,10,11,12)" XDC InChIKey InChI 1.06 DRBBFCLWYRJSJZ-UHFFFAOYSA-N XDC SMILES_CANONICAL CACTVS 3.385 "CN(CC(O)=O)C(N)=N[P](O)(O)=O" XDC SMILES CACTVS 3.385 "CN(CC(O)=O)C(N)=N[P](O)(O)=O" XDC SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CN(CC(=O)O)C(=NP(=O)(O)O)N" XDC SMILES "OpenEye OEToolkits" 2.0.7 "CN(CC(=O)O)C(=NP(=O)(O)O)N" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier XDC "SYSTEMATIC NAME" ACDLabs 12.01 "N-methyl-N-(N'-phosphonocarbamimidoyl)glycine" XDC "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 ;2-[methyl-(~{N}'-phosphonocarbamimidoyl)amino]ethanoic acid ; # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id XDC _pdbx_chem_comp_synonyms.name "N-methyl-N-(N'-phosphonocarbamimidoyl)glycine" _pdbx_chem_comp_synonyms.provenance PDB _pdbx_chem_comp_synonyms.type ? # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site XDC "Create component" 2023-10-30 RCSB XDC "Initial release" 2026-04-22 RCSB #