data_XDK # _chem_comp.id XDK _chem_comp.name 2-AMINO-4-PYRIDYL-PYRIMIDINE _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C9 H8 N4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2010-05-04 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 172.187 _chem_comp.one_letter_code ? _chem_comp.three_letter_code XDK _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 2XDK _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal XDK C7A C7A C 0 1 Y N N 6.212 4.181 9.306 -2.971 1.395 -0.060 C7A XDK 1 XDK C3A C3A C 0 1 Y N N 5.806 4.254 7.986 -3.772 0.269 0.010 C3A XDK 2 XDK N2A N2A N 0 1 Y N N 5.858 3.203 7.160 -3.244 -0.938 0.068 N2A XDK 3 XDK C1A C1A C 0 1 Y N N 6.305 2.038 7.654 -1.940 -1.128 0.064 C1A XDK 4 XDK C5A C5A C 0 1 Y N N 6.725 1.873 8.973 -1.066 -0.045 -0.005 C5A XDK 5 XDK C4 C4 C 0 1 Y N N 7.211 0.555 9.469 0.401 -0.260 -0.010 C4 XDK 6 XDK N3 N3 N 0 1 Y N N 6.728 0.143 10.652 1.236 0.776 0.025 N3 XDK 7 XDK C5 C5 C 0 1 Y N N 8.104 -0.221 8.753 0.929 -1.554 -0.046 C5 XDK 8 XDK C6 C6 C 0 1 Y N N 8.490 -1.435 9.272 2.304 -1.705 -0.049 C6 XDK 9 XDK N1 N1 N 0 1 Y N N 8.023 -1.867 10.444 3.074 -0.628 -0.019 N1 XDK 10 XDK C2 C2 C 0 1 Y N N 7.148 -1.065 11.096 2.546 0.586 0.020 C2 XDK 11 XDK N7 N7 N 0 1 N N N 6.644 -1.508 12.296 3.387 1.686 0.057 N7 XDK 12 XDK C9 C9 C 0 1 Y N N 6.669 2.981 9.809 -1.595 1.248 -0.068 C9 XDK 13 XDK H7A H7A H 0 1 N N N 6.172 5.056 9.937 -3.415 2.378 -0.112 H7A XDK 14 XDK H3A H3A H 0 1 N N N 5.433 5.194 7.608 -4.846 0.380 0.016 H3A XDK 15 XDK H9 H9 H 0 1 N N N 6.980 2.904 10.840 -0.946 2.109 -0.122 H9 XDK 16 XDK H1A H1A H 0 1 N N N 6.341 1.183 6.995 -1.545 -2.132 0.113 H1A XDK 17 XDK H5 H5 H 0 1 N N N 8.491 0.120 7.804 0.278 -2.415 -0.070 H5 XDK 18 XDK H6 H6 H 0 1 N N N 9.185 -2.050 8.720 2.744 -2.691 -0.076 H6 XDK 19 XDK H71N H71N H 0 0 N N N 7.391 -1.616 12.952 3.014 2.581 0.086 H71N XDK 20 XDK H72N H72N H 0 0 N N N 5.985 -0.842 12.647 4.349 1.561 0.054 H72N XDK 21 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal XDK C7A C3A SING Y N 1 XDK C7A C9 DOUB Y N 2 XDK C3A N2A DOUB Y N 3 XDK N2A C1A SING Y N 4 XDK C1A C5A DOUB Y N 5 XDK C5A C4 SING Y N 6 XDK C5A C9 SING Y N 7 XDK C4 N3 DOUB Y N 8 XDK C4 C5 SING Y N 9 XDK N3 C2 SING Y N 10 XDK C5 C6 DOUB Y N 11 XDK C6 N1 SING Y N 12 XDK N1 C2 DOUB Y N 13 XDK C2 N7 SING N N 14 XDK C7A H7A SING N N 15 XDK C3A H3A SING N N 16 XDK C9 H9 SING N N 17 XDK C1A H1A SING N N 18 XDK C5 H5 SING N N 19 XDK C6 H6 SING N N 20 XDK N7 H71N SING N N 21 XDK N7 H72N SING N N 22 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor XDK SMILES ACDLabs 10.04 "n2c(c1cnccc1)ccnc2N" XDK SMILES_CANONICAL CACTVS 3.352 "Nc1nccc(n1)c2cccnc2" XDK SMILES CACTVS 3.352 "Nc1nccc(n1)c2cccnc2" XDK SMILES_CANONICAL "OpenEye OEToolkits" 1.6.1 "c1cc(cnc1)c2ccnc(n2)N" XDK SMILES "OpenEye OEToolkits" 1.6.1 "c1cc(cnc1)c2ccnc(n2)N" XDK InChI InChI 1.03 "InChI=1S/C9H8N4/c10-9-12-5-3-8(13-9)7-2-1-4-11-6-7/h1-6H,(H2,10,12,13)" XDK InChIKey InChI 1.03 LQHQKYWYKPLKCH-UHFFFAOYSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier XDK "SYSTEMATIC NAME" ACDLabs 10.04 4-pyridin-3-ylpyrimidin-2-amine XDK "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.6.1 4-pyridin-3-ylpyrimidin-2-amine # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site XDK "Create component" 2010-05-04 EBI XDK "Modify aromatic_flag" 2011-06-04 RCSB XDK "Modify descriptor" 2011-06-04 RCSB #