data_XDQ # _chem_comp.id XDQ _chem_comp.name "(2~{R})-2-[[4-[chloranyl-bis(fluoranyl)methoxy]phenyl]-(2-chloranyl-2-fluoranyl-ethanoyl)amino]-~{N}-(oxan-4-yl)-2-pyrimidin-5-yl-propanamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C21 H21 Cl2 F3 N4 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-10-27 _chem_comp.pdbx_modified_date 2025-04-18 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 521.317 _chem_comp.one_letter_code ? _chem_comp.three_letter_code XDQ _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8WTS _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal XDQ N3 N1 N 0 1 N N N N N N -21.992 39.657 1.238 -2.507 -1.107 -0.890 N3 XDQ 1 XDQ C4 C1 C 0 1 N N R N N N -22.036 41.225 3.305 -0.848 0.727 -0.850 C4 XDQ 2 XDQ C6 C2 C 0 1 N N N N N N -23.583 41.134 3.290 -0.043 0.377 -2.103 C6 XDQ 3 XDQ C7 C3 C 0 1 Y N N N N N -21.441 40.752 4.672 -0.876 2.224 -0.673 C7 XDQ 4 XDQ C8 C4 C 0 1 Y N N N N N -20.110 41.065 5.045 -1.488 3.038 -1.612 C8 XDQ 5 XDQ N12 N2 N 0 1 Y N N N N N -19.610 40.612 6.231 -1.492 4.348 -1.423 N12 XDQ 6 XDQ C13 C5 C 0 1 Y N N N N N -21.194 42.932 1.734 1.106 -0.330 0.256 C13 XDQ 7 XDQ C15 C6 C 0 1 N N S N N N -20.936 44.911 3.826 -2.431 0.020 1.431 C15 XDQ 8 XDQ C20 C7 C 0 1 Y N N N N N -22.245 43.475 0.979 1.397 -1.684 0.359 C20 XDQ 9 XDQ C21 C8 C 0 1 Y N N N N N -22.028 43.794 -0.334 2.707 -2.115 0.296 C21 XDQ 10 XDQ C22 C9 C 0 1 Y N N N N N -20.804 43.708 -0.950 3.733 -1.196 0.128 C22 XDQ 11 XDQ O1 O1 O 0 1 N N N N N N -20.137 40.065 2.349 -3.166 0.987 -1.214 O1 XDQ 12 XDQ C2 C10 C 0 1 N N N N N N -21.352 40.280 2.274 -2.257 0.213 -0.998 C2 XDQ 13 XDQ N5 N3 N 0 1 N N N N N N -21.588 42.602 3.044 -0.223 0.108 0.321 N5 XDQ 14 XDQ C9 C11 C 0 1 Y N N N N N -22.193 40.041 5.608 -0.294 2.818 0.436 C9 XDQ 15 XDQ N10 N4 N 0 1 Y N N N N N -21.663 39.639 6.750 -0.338 4.135 0.558 N10 XDQ 16 XDQ C11 C12 C 0 1 Y N N N N N -20.402 39.950 7.055 -0.924 4.878 -0.359 C11 XDQ 17 XDQ C14 C13 C 0 1 N N N N N N -21.631 43.577 4.002 -0.926 -0.040 1.461 C14 XDQ 18 XDQ O16 O2 O 0 1 N N N N N N -22.122 43.333 5.110 -0.347 -0.220 2.512 O16 XDQ 19 XDQ F17 F1 F 0 1 N N N N N N -21.374 45.758 4.828 -2.939 -0.380 2.672 F17 XDQ 20 XDQ C19 C14 C 0 1 Y N N N N N -19.999 42.876 1.103 2.134 0.590 0.094 C19 XDQ 21 XDQ C23 C15 C 0 1 Y N N N N N -19.786 43.218 -0.186 3.443 0.157 0.025 C23 XDQ 22 XDQ O24 O3 O 0 1 N N N N N N -20.655 44.130 -2.248 5.023 -1.621 0.065 O24 XDQ 23 XDQ C25 C16 C 0 1 N N N N N N -19.901 43.552 -3.301 6.028 -0.621 -0.108 C25 XDQ 24 XDQ F26 F2 F 0 1 N N N N N N -18.561 43.435 -3.008 5.800 0.067 -1.305 F26 XDQ 25 XDQ F27 F3 F 0 1 N N N N N N -20.260 44.061 -4.620 5.981 0.279 0.962 F27 XDQ 26 XDQ CL2 CL1 CL 0 0 N N N N N N -20.307 41.866 -3.244 7.652 -1.403 -0.164 CL2 XDQ 27 XDQ C29 C17 C 0 1 N N N N N N -21.312 38.760 0.292 -3.883 -1.602 -0.985 C29 XDQ 28 XDQ C30 C18 C 0 1 N N N N N N -22.286 37.651 -0.055 -3.868 -3.094 -1.332 C30 XDQ 29 XDQ C31 C19 C 0 1 N N N N N N -20.894 39.556 -0.941 -4.592 -1.406 0.358 C31 XDQ 30 XDQ C32 C20 C 0 1 N N N N N N -20.343 38.527 -1.962 -6.002 -1.997 0.273 C32 XDQ 31 XDQ O33 O4 O 0 1 N N N N N N -21.509 37.757 -2.296 -5.917 -3.379 -0.081 O33 XDQ 32 XDQ C34 C21 C 0 1 N N N N N N -21.828 36.846 -1.261 -5.306 -3.619 -1.352 C34 XDQ 33 XDQ H1 H1 H 0 1 N N N N N N -22.971 39.820 1.118 -1.776 -1.730 -0.754 H1 XDQ 34 XDQ H2 H2 H 0 1 N N N N N N -23.999 41.824 4.039 -0.350 1.024 -2.925 H2 XDQ 35 XDQ H3 H3 H 0 1 N N N N N N -23.957 41.407 2.292 1.019 0.519 -1.905 H3 XDQ 36 XDQ H4 H4 H 0 1 N N N N N N -23.892 40.106 3.528 -0.226 -0.664 -2.373 H4 XDQ 37 XDQ H5 H5 H 0 1 N N N N N N -19.492 41.662 4.391 -1.955 2.610 -2.487 H5 XDQ 38 XDQ H6 H6 H 0 1 N N N N N N -21.091 45.313 2.814 -2.806 -0.647 0.654 H6 XDQ 39 XDQ H8 H8 H 0 1 N N N N N N -23.213 43.639 1.429 0.599 -2.399 0.490 H8 XDQ 40 XDQ H9 H9 H 0 1 N N N N N N -22.869 44.133 -0.920 2.934 -3.168 0.376 H9 XDQ 41 XDQ H10 H10 H 0 1 N N N N N N -23.227 39.815 5.395 0.188 2.214 1.191 H10 XDQ 42 XDQ H11 H11 H 0 1 N N N N N N -20.012 39.648 8.016 -0.944 5.951 -0.232 H11 XDQ 43 XDQ H12 H12 H 0 1 N N N N N N -19.150 42.531 1.674 1.909 1.643 0.017 H12 XDQ 44 XDQ H13 H13 H 0 1 N N N N N N -18.802 43.103 -0.615 4.242 0.872 -0.105 H13 XDQ 45 XDQ H14 H14 H 0 1 N N N N N N -20.418 38.326 0.763 -4.415 -1.052 -1.762 H14 XDQ 46 XDQ H15 H15 H 0 1 N N N N N N -23.267 38.097 -0.277 -3.415 -3.235 -2.313 H15 XDQ 47 XDQ H16 H16 H 0 1 N N N N N N -22.377 36.976 0.809 -3.291 -3.636 -0.583 H16 XDQ 48 XDQ H17 H17 H 0 1 N N N N N N -20.113 40.285 -0.677 -4.031 -1.914 1.143 H17 XDQ 49 XDQ H18 H18 H 0 1 N N N N N N -21.761 40.085 -1.364 -4.655 -0.342 0.585 H18 XDQ 50 XDQ H19 H19 H 0 1 N N N N N N -19.567 37.894 -1.507 -6.496 -1.899 1.240 H19 XDQ 51 XDQ H20 H20 H 0 1 N N N N N N -19.932 39.030 -2.850 -6.575 -1.462 -0.484 H20 XDQ 52 XDQ H21 H21 H 0 1 N N N N N N -22.634 36.174 -1.590 -5.871 -3.106 -2.130 H21 XDQ 53 XDQ H22 H22 H 0 1 N N N N N N -20.940 36.252 -0.999 -5.298 -4.690 -1.555 H22 XDQ 54 XDQ CL1 CL2 CL 0 0 N N N N N N -19.060 44.617 4.020 -2.960 1.707 1.081 CL1 XDQ 55 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal XDQ F27 C25 SING N N 1 XDQ C25 CL2 SING N N 2 XDQ C25 F26 SING N N 3 XDQ C25 O24 SING N N 4 XDQ O33 C32 SING N N 5 XDQ O33 C34 SING N N 6 XDQ O24 C22 SING N N 7 XDQ C32 C31 SING N N 8 XDQ C34 C30 SING N N 9 XDQ C22 C21 DOUB Y N 10 XDQ C22 C23 SING Y N 11 XDQ C31 C29 SING N N 12 XDQ C21 C20 SING Y N 13 XDQ C23 C19 DOUB Y N 14 XDQ C30 C29 SING N N 15 XDQ C29 N3 SING N N 16 XDQ C20 C13 DOUB Y N 17 XDQ C19 C13 SING Y N 18 XDQ N3 C2 SING N N 19 XDQ C13 N5 SING N N 20 XDQ C2 O1 DOUB N N 21 XDQ C2 C4 SING N N 22 XDQ N5 C4 SING N N 23 XDQ N5 C14 SING N N 24 XDQ C6 C4 SING N N 25 XDQ C4 C7 SING N N 26 XDQ C15 C14 SING N N 27 XDQ C15 F17 SING N N 28 XDQ C14 O16 DOUB N N 29 XDQ C7 C8 DOUB Y N 30 XDQ C7 C9 SING Y N 31 XDQ C8 N12 SING Y N 32 XDQ C9 N10 DOUB Y N 33 XDQ N12 C11 DOUB Y N 34 XDQ N10 C11 SING Y N 35 XDQ N3 H1 SING N N 36 XDQ C6 H2 SING N N 37 XDQ C6 H3 SING N N 38 XDQ C6 H4 SING N N 39 XDQ C8 H5 SING N N 40 XDQ C15 H6 SING N N 41 XDQ C20 H8 SING N N 42 XDQ C21 H9 SING N N 43 XDQ C9 H10 SING N N 44 XDQ C11 H11 SING N N 45 XDQ C19 H12 SING N N 46 XDQ C23 H13 SING N N 47 XDQ C29 H14 SING N N 48 XDQ C30 H15 SING N N 49 XDQ C30 H16 SING N N 50 XDQ C31 H17 SING N N 51 XDQ C31 H18 SING N N 52 XDQ C32 H19 SING N N 53 XDQ C32 H20 SING N N 54 XDQ C34 H21 SING N N 55 XDQ C34 H22 SING N N 56 XDQ C15 CL1 SING N N 57 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor XDQ InChI InChI 1.06 "InChI=1S/C21H21Cl2F3N4O4/c1-20(13-10-27-12-28-11-13,19(32)29-14-6-8-33-9-7-14)30(18(31)17(22)24)15-2-4-16(5-3-15)34-21(23,25)26/h2-5,10-12,14,17H,6-9H2,1H3,(H,29,32)/t17-,20-/m1/s1" XDQ InChIKey InChI 1.06 YWLKYOUHSKWUGZ-YLJYHZDGSA-N XDQ SMILES_CANONICAL CACTVS 3.385 "C[C@](N(C(=O)[C@@H](F)Cl)c1ccc(OC(F)(F)Cl)cc1)(C(=O)NC2CCOCC2)c3cncnc3" XDQ SMILES CACTVS 3.385 "C[C](N(C(=O)[CH](F)Cl)c1ccc(OC(F)(F)Cl)cc1)(C(=O)NC2CCOCC2)c3cncnc3" XDQ SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@@](c1cncnc1)(C(=O)NC2CCOCC2)N(c3ccc(cc3)OC(F)(F)Cl)C(=O)C(F)Cl" XDQ SMILES "OpenEye OEToolkits" 2.0.7 "CC(c1cncnc1)(C(=O)NC2CCOCC2)N(c3ccc(cc3)OC(F)(F)Cl)C(=O)C(F)Cl" # _pdbx_chem_comp_identifier.comp_id XDQ _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{R})-2-[[4-[chloranyl-bis(fluoranyl)methoxy]phenyl]-(2-chloranyl-2-fluoranyl-ethanoyl)amino]-~{N}-(oxan-4-yl)-2-pyrimidin-5-yl-propanamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site XDQ "Create component" 2023-10-27 PDBJ XDQ "Modify PCM" 2024-09-27 PDBE XDQ "Initial release" 2025-04-23 RCSB # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id XDQ _pdbx_chem_comp_pcm.modified_residue_id CYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C15 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #