data_XDT # _chem_comp.id XDT _chem_comp.name O-methyl-D-allothreonine _chem_comp.type "D-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C5 H11 N O3" _chem_comp.mon_nstd_parent_comp_id DTH _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2013-06-06 _chem_comp.pdbx_modified_date 2018-01-16 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 133.146 _chem_comp.one_letter_code T _chem_comp.three_letter_code XDT _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3ZOI _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal XDT N N N 0 1 N N N 7.408 38.107 4.672 -1.024 1.967 -0.067 N XDT 1 XDT CA CA C 0 1 N N R 6.601 36.849 4.461 -0.478 0.700 0.438 CA XDT 2 XDT C C C 0 1 N N N 5.322 36.964 5.293 -1.395 -0.432 0.054 C XDT 3 XDT O O O 0 1 N N N 5.238 38.003 5.978 -2.181 -0.291 -0.854 O XDT 4 XDT CB CB C 0 1 N N R 6.389 36.970 2.967 0.907 0.464 -0.169 CB XDT 5 XDT OG1 OG1 O 0 1 N N N 5.240 37.676 2.547 1.438 -0.768 0.323 OG1 XDT 6 XDT CG2 CG2 C 0 1 N N N 7.420 36.265 2.069 1.838 1.613 0.222 CG2 XDT 7 XDT CD1 CD1 C 0 1 N N N 4.333 37.121 1.576 2.317 -1.428 -0.590 CD1 XDT 8 XDT OXT OXT O 0 1 N Y N 4.458 36.041 5.233 -1.339 -1.596 0.719 OXT XDT 9 XDT H H H 0 1 N N N 8.251 38.056 4.137 -1.110 1.948 -1.072 H XDT 10 XDT H2 H2 H 0 1 N Y N 6.874 38.899 4.377 -1.910 2.178 0.368 H2 XDT 11 XDT HCA HCA H 0 1 N N N 7.173 35.946 4.721 -0.395 0.748 1.524 HCA XDT 12 XDT HB HB H 0 1 N N N 6.983 37.896 2.944 0.824 0.416 -1.254 HB XDT 13 XDT HG21 HG21 H 0 0 N N N 7.158 36.426 1.013 1.433 2.553 -0.153 HG21 XDT 14 XDT HG22 HG22 H 0 0 N N N 8.420 36.678 2.265 1.921 1.661 1.308 HG22 XDT 15 XDT HG23 HG23 H 0 0 N N N 7.419 35.187 2.287 2.824 1.445 -0.210 HG23 XDT 16 XDT HD11 HD11 H 0 0 N N N 3.512 37.830 1.393 1.781 -1.654 -1.512 HD11 XDT 17 XDT HD12 HD12 H 0 0 N N N 4.872 36.934 0.636 3.164 -0.778 -0.813 HD12 XDT 18 XDT HD13 HD13 H 0 0 N N N 3.922 36.174 1.957 2.678 -2.354 -0.143 HD13 XDT 19 XDT HXT HXT H 0 1 N Y N 3.723 36.257 5.795 -1.947 -2.293 0.436 HXT XDT 20 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal XDT N CA SING N N 1 XDT N H SING N N 2 XDT N H2 SING N N 3 XDT CA C SING N N 4 XDT CA CB SING N N 5 XDT CA HCA SING N N 6 XDT C O DOUB N N 7 XDT C OXT SING N N 8 XDT CB OG1 SING N N 9 XDT CB CG2 SING N N 10 XDT CB HB SING N N 11 XDT OG1 CD1 SING N N 12 XDT CG2 HG21 SING N N 13 XDT CG2 HG22 SING N N 14 XDT CG2 HG23 SING N N 15 XDT CD1 HD11 SING N N 16 XDT CD1 HD12 SING N N 17 XDT CD1 HD13 SING N N 18 XDT OXT HXT SING N N 19 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor XDT SMILES ACDLabs 12.01 "NC(C(=O)O)C(OC)C" XDT InChI InChI 1.03 "InChI=1S/C5H11NO3/c1-3(9-2)4(6)5(7)8/h3-4H,6H2,1-2H3,(H,7,8)/t3-,4-/m1/s1" XDT InChIKey InChI 1.03 FYCWLJLGIAUCCL-QWWZWVQMSA-N XDT SMILES_CANONICAL CACTVS 3.385 "CO[C@H](C)[C@@H](N)C(O)=O" XDT SMILES CACTVS 3.385 "CO[CH](C)[CH](N)C(O)=O" XDT SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "CC([C@H](C(=O)O)N)OC" XDT SMILES "OpenEye OEToolkits" 2.0.6 "CC(C(C(=O)O)N)OC" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier XDT "SYSTEMATIC NAME" ACDLabs 12.01 O-methyl-D-allothreonine XDT "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "(2~{R})-2-azanyl-3-methoxy-butanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site XDT "Create component" 2013-06-06 EBI XDT "Other modification" 2013-06-12 EBI XDT "Modify descriptor" 2014-09-05 RCSB XDT "Modify name" 2018-01-16 RCSB #