data_XEK # _chem_comp.id XEK _chem_comp.name "(5P)-5-[(1P,3M,3'P)-3-{3-chloro-5-[(2-chlorophenyl)methoxy]-4-fluorophenyl}-2-oxo-2H-[1,3'-bipyridin]-5-yl]-1-methylpyrimidine-2,4(1H,3H)-dione" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C28 H19 Cl2 F N4 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-10-31 _chem_comp.pdbx_modified_date 2024-05-10 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 565.379 _chem_comp.one_letter_code ? _chem_comp.three_letter_code XEK _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8UR9 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal XEK C1 C1 C 0 1 N N N N N N -20.318 -4.717 -27.439 0.920 0.998 1.242 C1 XEK 1 XEK C2 C2 C 0 1 N N N N N N -21.621 -4.449 -27.816 0.824 -0.321 0.738 C2 XEK 2 XEK C3 C3 C 0 1 Y N N N N N -21.956 -4.288 -29.289 -0.391 -1.132 0.985 C3 XEK 3 XEK C4 C4 C 0 1 Y N N N N N -22.494 -3.095 -29.699 -0.315 -2.286 1.763 C4 XEK 4 XEK C5 C5 C 0 1 Y N N N N N -22.789 -2.924 -31.032 -1.450 -3.040 1.992 C5 XEK 5 XEK C6 C6 C 0 1 Y N N N N N -22.564 -3.938 -31.958 -2.664 -2.652 1.450 C6 XEK 6 XEK C7 C7 C 0 1 Y N N N N N -22.020 -5.155 -31.552 -2.746 -1.502 0.673 C7 XEK 7 XEK C8 C8 C 0 1 N N N N N N -20.411 -6.566 -32.675 -3.951 0.067 -0.647 C8 XEK 8 XEK C9 C9 C 0 1 Y N N N N N -20.211 -7.369 -33.980 -5.349 0.324 -1.148 C9 XEK 9 XEK C10 C10 C 0 1 Y N N N N N -20.674 -8.683 -34.073 -6.372 -0.544 -0.818 C10 XEK 10 XEK C11 C11 C 0 1 Y N N N N N -20.505 -9.413 -35.250 -7.654 -0.308 -1.278 C11 XEK 11 XEK C12 C12 C 0 1 Y N N N N N -19.868 -8.844 -36.348 -7.914 0.796 -2.068 C12 XEK 12 XEK C13 C13 C 0 1 Y N N N N N -19.396 -7.540 -36.272 -6.891 1.666 -2.398 C13 XEK 13 XEK C14 C14 C 0 1 Y N N N N N -19.566 -6.810 -35.092 -5.609 1.433 -1.933 C14 XEK 14 XEK C15 C15 C 0 1 Y N N N N N -21.722 -5.318 -30.202 -1.615 -0.739 0.444 C15 XEK 15 XEK C17 C16 C 0 1 N N N N N N -22.283 -4.453 -25.514 3.021 -0.048 -0.206 C17 XEK 16 XEK C21 C17 C 0 1 N N N N N N -26.986 -4.991 -24.292 7.766 -1.303 -0.547 C21 XEK 17 XEK C22 C18 C 0 1 N N N N N N -25.375 -4.323 -22.605 6.266 -1.573 -2.432 C22 XEK 18 XEK C24 C19 C 0 1 Y N N N N N -18.661 -5.128 -25.770 2.103 3.035 1.523 C24 XEK 19 XEK C25 C20 C 0 1 Y N N N N N -18.219 -6.381 -25.383 2.631 3.270 2.790 C25 XEK 20 XEK C27 C21 C 0 1 Y N N N N N -16.016 -5.421 -25.111 2.230 5.597 2.434 C27 XEK 21 XEK C16 C22 C 0 1 N N N N N N -22.608 -4.322 -26.852 1.879 -0.845 0.012 C16 XEK 22 XEK C18 C23 C 0 1 N N N N N N -23.364 -4.362 -24.429 4.167 -0.583 -0.981 C18 XEK 23 XEK C19 C24 C 0 1 N N N N N N -23.117 -4.029 -23.092 3.997 -1.015 -2.375 C19 XEK 24 XEK C20 C25 C 0 1 N N N N N N -24.664 -4.682 -24.794 5.403 -0.691 -0.417 C20 XEK 25 XEK C23 C26 C 0 1 N N N N N N -20.974 -4.754 -25.189 3.068 1.229 0.304 C23 XEK 26 XEK C26 C27 C 0 1 Y N N N N N -16.878 -6.520 -25.049 2.691 4.577 3.245 C26 XEK 27 XEK C28 C28 C 0 1 Y N N N N N -17.765 -4.053 -25.807 1.660 4.113 0.767 C28 XEK 28 XEK F1 F1 F 0 1 N N N N N N -22.895 -3.718 -33.260 -3.771 -3.393 1.676 F1 XEK 29 XEK N1 N1 N 0 1 N N N N N N -24.129 -4.013 -22.213 5.069 -1.495 -3.040 N1 XEK 30 XEK N2 N2 N 0 1 N N N N N N -25.633 -4.651 -23.883 6.439 -1.188 -1.157 N2 XEK 31 XEK N3 N3 N 0 1 N N N N N N -20.036 -4.866 -26.140 2.025 1.732 1.016 N3 XEK 32 XEK N4 N4 N 0 1 Y N N N N N -16.472 -4.213 -25.484 1.736 5.341 1.238 N4 XEK 33 XEK O1 O1 O 0 1 N N N N N N -19.309 -4.850 -28.412 -0.005 1.474 1.880 O1 XEK 34 XEK O2 O2 O 0 1 N N N N N N -21.775 -6.207 -32.469 -3.940 -1.125 0.141 O2 XEK 35 XEK O3 O3 O 0 1 N N N N N N -21.837 -3.690 -22.650 2.912 -0.938 -2.921 O3 XEK 36 XEK O4 O4 O 0 1 N N N N N N -26.431 -4.306 -21.673 7.217 -2.009 -3.052 O4 XEK 37 XEK CL1 CL1 CL 0 0 N N N N N N -23.470 -1.361 -31.533 -1.355 -4.477 2.962 CL1 XEK 38 XEK CL2 CL2 CL 0 0 N N N N N N -18.950 -5.140 -35.041 -4.326 2.529 -2.342 CL2 XEK 39 XEK H1 H1 H 0 1 N N N N N N -22.683 -2.304 -28.988 0.630 -2.590 2.187 H1 XEK 40 XEK H2 H2 H 0 1 N N N N N N -19.807 -5.648 -32.727 -3.277 -0.052 -1.495 H2 XEK 41 XEK H3 H3 H 0 1 N N N N N N -20.074 -7.179 -31.826 -3.623 0.909 -0.037 H3 XEK 42 XEK H4 H4 H 0 1 N N N N N N -21.167 -9.138 -33.227 -6.170 -1.408 -0.202 H4 XEK 43 XEK H5 H5 H 0 1 N N N N N N -20.871 -10.427 -35.309 -8.454 -0.987 -1.020 H5 XEK 44 XEK H6 H6 H 0 1 N N N N N N -19.741 -9.414 -37.256 -8.915 0.980 -2.427 H6 XEK 45 XEK H7 H7 H 0 1 N N N N N N -18.900 -7.092 -37.120 -7.093 2.528 -3.016 H7 XEK 46 XEK H8 H8 H 0 1 N N N N N N -21.305 -6.252 -29.857 -1.679 0.157 -0.155 H8 XEK 47 XEK H13 H9 H 0 1 N N N N N N -27.661 -4.917 -23.427 7.867 -2.282 -0.078 H13 XEK 48 XEK H14 H10 H 0 1 N N N N N N -27.318 -4.295 -25.076 8.531 -1.188 -1.315 H14 XEK 49 XEK H12 H11 H 0 1 N N N N N N -27.003 -6.019 -24.683 7.888 -0.525 0.207 H12 XEK 50 XEK H16 H12 H 0 1 N N N N N N -18.894 -7.223 -25.342 2.983 2.454 3.402 H16 XEK 51 XEK H18 H13 H 0 1 N N N N N N -14.974 -5.544 -24.857 2.275 6.617 2.784 H18 XEK 52 XEK H9 H14 H 0 1 N N N N N N -23.628 -4.121 -27.144 1.829 -1.849 -0.383 H9 XEK 53 XEK H11 H15 H 0 1 N N N N N N -24.888 -4.955 -25.814 5.563 -0.382 0.605 H11 XEK 54 XEK H15 H16 H 0 1 N N N N N N -20.703 -4.901 -24.154 3.944 1.838 0.137 H15 XEK 55 XEK H17 H17 H 0 1 N N N N N N -16.499 -7.483 -24.740 3.094 4.797 4.223 H17 XEK 56 XEK H19 H18 H 0 1 N N N N N N -18.121 -3.077 -26.101 1.249 3.942 -0.218 H19 XEK 57 XEK H10 H19 H 0 1 N N N N N N -23.955 -3.769 -21.259 4.976 -1.785 -3.961 H10 XEK 58 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal XEK O1 C1 DOUB N N 1 XEK C1 C2 SING N N 2 XEK C1 N3 SING N N 3 XEK C2 C3 SING N N 4 XEK C2 C16 DOUB N N 5 XEK C3 C4 DOUB Y N 6 XEK C3 C15 SING Y N 7 XEK C4 C5 SING Y N 8 XEK C5 CL1 SING N N 9 XEK C5 C6 DOUB Y N 10 XEK C6 F1 SING N N 11 XEK C6 C7 SING Y N 12 XEK C7 O2 SING N N 13 XEK C7 C15 DOUB Y N 14 XEK O2 C8 SING N N 15 XEK C8 C9 SING N N 16 XEK C9 C10 DOUB Y N 17 XEK C9 C14 SING Y N 18 XEK C10 C11 SING Y N 19 XEK C11 C12 DOUB Y N 20 XEK C12 C13 SING Y N 21 XEK C13 C14 DOUB Y N 22 XEK C14 CL2 SING N N 23 XEK C16 C17 SING N N 24 XEK C17 C18 SING N N 25 XEK C17 C23 DOUB N N 26 XEK C18 C19 SING N N 27 XEK C18 C20 DOUB N N 28 XEK C19 N1 SING N N 29 XEK C19 O3 DOUB N N 30 XEK N1 C22 SING N N 31 XEK C20 N2 SING N N 32 XEK N2 C21 SING N N 33 XEK N2 C22 SING N N 34 XEK C22 O4 DOUB N N 35 XEK C23 N3 SING N N 36 XEK N3 C24 SING N N 37 XEK C24 C25 DOUB Y N 38 XEK C24 C28 SING Y N 39 XEK C25 C26 SING Y N 40 XEK C26 C27 DOUB Y N 41 XEK C27 N4 SING Y N 42 XEK N4 C28 DOUB Y N 43 XEK C4 H1 SING N N 44 XEK C8 H2 SING N N 45 XEK C8 H3 SING N N 46 XEK C10 H4 SING N N 47 XEK C11 H5 SING N N 48 XEK C12 H6 SING N N 49 XEK C13 H7 SING N N 50 XEK C15 H8 SING N N 51 XEK C21 H13 SING N N 52 XEK C21 H14 SING N N 53 XEK C21 H12 SING N N 54 XEK C25 H16 SING N N 55 XEK C27 H18 SING N N 56 XEK C16 H9 SING N N 57 XEK C20 H11 SING N N 58 XEK C23 H15 SING N N 59 XEK C26 H17 SING N N 60 XEK C28 H19 SING N N 61 XEK N1 H10 SING N N 62 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor XEK SMILES ACDLabs 12.01 "O=C1NC(=O)N(C)C=C1C=1C=C(c2cc(OCc3ccccc3Cl)c(F)c(Cl)c2)C(=O)N(C=1)c1cccnc1" XEK InChI InChI 1.06 "InChI=1S/C28H19Cl2FN4O4/c1-34-14-21(26(36)33-28(34)38)18-9-20(27(37)35(13-18)19-6-4-8-32-12-19)17-10-23(30)25(31)24(11-17)39-15-16-5-2-3-7-22(16)29/h2-14H,15H2,1H3,(H,33,36,38)" XEK InChIKey InChI 1.06 KIJKUSPNZALBLD-UHFFFAOYSA-N XEK SMILES_CANONICAL CACTVS 3.385 "CN1C=C(C(=O)NC1=O)C2=CN(C(=O)C(=C2)c3cc(Cl)c(F)c(OCc4ccccc4Cl)c3)c5cccnc5" XEK SMILES CACTVS 3.385 "CN1C=C(C(=O)NC1=O)C2=CN(C(=O)C(=C2)c3cc(Cl)c(F)c(OCc4ccccc4Cl)c3)c5cccnc5" XEK SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CN1C=C(C(=O)NC1=O)C2=CN(C(=O)C(=C2)c3cc(c(c(c3)Cl)F)OCc4ccccc4Cl)c5cccnc5" XEK SMILES "OpenEye OEToolkits" 2.0.7 "CN1C=C(C(=O)NC1=O)C2=CN(C(=O)C(=C2)c3cc(c(c(c3)Cl)F)OCc4ccccc4Cl)c5cccnc5" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier XEK "SYSTEMATIC NAME" ACDLabs 12.01 "(5P)-5-[(1P,3M,3'P)-3-{3-chloro-5-[(2-chlorophenyl)methoxy]-4-fluorophenyl}-2-oxo-2H-[1,3'-bipyridin]-5-yl]-1-methylpyrimidine-2,4(1H,3H)-dione" XEK "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "5-[5-[3-chloranyl-5-[(2-chlorophenyl)methoxy]-4-fluoranyl-phenyl]-6-oxidanylidene-1-pyridin-3-yl-pyridin-3-yl]-1-methyl-pyrimidine-2,4-dione" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site XEK "Create component" 2023-10-31 RCSB XEK "Initial release" 2024-05-15 RCSB #