data_XF4 # _chem_comp.id XF4 _chem_comp.name "(5S)-5-{3-[3-(benzyloxy)-5-chlorophenyl]-2-oxo[2H-[1,3'-bipyridine]]-5-yl}pyrimidine-2,4(3H,5H)-dione" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C27 H19 Cl N4 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-12-15 _chem_comp.pdbx_modified_date 2021-02-26 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 498.917 _chem_comp.one_letter_code ? _chem_comp.three_letter_code XF4 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7L12 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal XF4 C1 C1 C 0 1 N N N -13.867 -26.903 1.012 -0.961 1.403 -0.520 C1 XF4 1 XF4 C2 C2 C 0 1 N N N -14.182 -28.874 -0.272 -1.673 -0.828 0.067 C2 XF4 2 XF4 C3 C3 C 0 1 N N N -14.693 -27.647 0.162 -0.682 0.021 -0.394 C3 XF4 3 XF4 C4 C4 C 0 1 Y N N -16.070 -27.165 -0.299 0.655 -0.510 -0.750 C4 XF4 4 XF4 C5 C5 C 0 1 Y N N -17.114 -28.096 -0.429 0.794 -1.392 -1.821 C5 XF4 5 XF4 C6 C6 C 0 1 Y N N -11.792 -26.570 2.340 -2.432 3.253 -0.323 C6 XF4 6 XF4 C7 C7 C 0 1 Y N N -18.382 -27.682 -0.862 2.041 -1.885 -2.151 C7 XF4 7 XF4 C8 C8 C 0 1 Y N N -18.603 -26.332 -1.156 3.154 -1.505 -1.422 C8 XF4 8 XF4 C9 C9 C 0 1 Y N N -17.567 -25.400 -1.022 3.024 -0.627 -0.355 C9 XF4 9 XF4 C10 C10 C 0 1 N N N -16.908 -23.073 -0.905 5.374 -0.810 -0.046 C10 XF4 10 XF4 C11 C11 C 0 1 Y N N -17.615 -21.786 -1.304 6.465 -0.290 0.854 C11 XF4 11 XF4 C12 C12 C 0 1 Y N N -16.304 -25.819 -0.591 1.777 -0.124 -0.020 C12 XF4 12 XF4 C13 C13 C 0 1 Y N N -12.163 -26.548 3.690 -3.273 3.724 -1.322 C13 XF4 13 XF4 C14 C14 C 0 1 Y N N -10.246 -25.174 4.172 -2.986 5.901 -0.626 C14 XF4 14 XF4 C15 C15 C 0 1 Y N N -9.879 -25.199 2.821 -2.139 5.510 0.394 C15 XF4 15 XF4 C16 C16 C 0 1 Y N N -10.651 -25.907 1.893 -1.851 4.164 0.556 C16 XF4 16 XF4 C17 C17 C 0 1 N N N -12.106 -28.554 1.017 -3.159 1.058 0.251 C17 XF4 17 XF4 C18 C18 C 0 1 N N N -12.918 -29.316 0.168 -2.933 -0.292 0.397 C18 XF4 18 XF4 C24 C19 C 0 1 N N N -12.391 -30.659 -0.342 -4.015 -1.179 0.892 C24 XF4 19 XF4 C25 C20 C 0 1 N N N -12.714 -30.983 -1.665 -4.491 -1.056 2.163 C25 XF4 20 XF4 C26 C21 C 0 1 N N N -11.600 -31.553 0.412 -4.602 -2.207 0.023 C26 XF4 21 XF4 C30 C22 C 0 1 N N N -11.507 -33.044 -1.479 -6.010 -2.826 1.783 C30 XF4 22 XF4 C32 C23 C 0 1 Y N N -18.791 -21.408 -0.642 6.796 -0.977 2.007 C32 XF4 23 XF4 C33 C24 C 0 1 Y N N -19.467 -20.237 -1.011 7.797 -0.499 2.832 C33 XF4 24 XF4 C34 C25 C 0 1 Y N N -18.985 -19.451 -2.060 8.467 0.665 2.505 C34 XF4 25 XF4 C35 C26 C 0 1 Y N N -17.821 -19.831 -2.737 8.136 1.351 1.352 C35 XF4 26 XF4 C36 C27 C 0 1 Y N N -17.143 -20.993 -2.349 7.139 0.871 0.523 C36 XF4 27 XF4 N19 N1 N 0 1 N N N -12.621 -27.329 1.430 -2.176 1.882 -0.196 N19 XF4 28 XF4 N20 N2 N 0 1 Y N N -11.385 -25.845 4.619 -3.521 5.013 -1.441 N20 XF4 29 XF4 N28 N3 N 0 1 N N N -11.177 -32.735 -0.169 -5.584 -2.990 0.518 N28 XF4 30 XF4 N29 N4 N 0 1 N N N -12.278 -32.171 -2.236 -5.488 -1.888 2.591 N29 XF4 31 XF4 O21 O1 O 0 1 N N N -14.343 -25.684 1.444 -0.095 2.164 -0.920 O21 XF4 32 XF4 O22 O2 O 0 1 N N N -17.823 -24.056 -1.317 4.120 -0.257 0.358 O22 XF4 33 XF4 O27 O3 O 0 1 N N N -11.234 -31.335 1.641 -4.213 -2.349 -1.121 O27 XF4 34 XF4 O31 O4 O 0 1 N N N -11.085 -34.157 -1.999 -6.895 -3.544 2.206 O31 XF4 35 XF4 CL23 CL1 CL 0 0 N N N -19.711 -28.862 -1.068 2.213 -2.984 -3.484 CL23 XF4 36 XF4 H1 H1 H 0 1 N N N -14.759 -29.487 -0.948 -1.483 -1.887 0.171 H1 XF4 37 XF4 H2 H2 H 0 1 N N N -16.939 -29.136 -0.194 -0.073 -1.691 -2.391 H2 XF4 38 XF4 H3 H3 H 0 1 N N N -19.578 -26.007 -1.488 4.127 -1.896 -1.681 H3 XF4 39 XF4 H4 H4 H 0 1 N N N -16.740 -23.115 0.181 5.583 -0.521 -1.076 H4 XF4 40 XF4 H5 H5 H 0 1 N N N -15.947 -23.179 -1.429 5.331 -1.897 0.026 H5 XF4 41 XF4 H6 H6 H 0 1 N N N -15.506 -25.099 -0.483 1.675 0.560 0.810 H6 XF4 42 XF4 H7 H7 H 0 1 N N N -13.049 -27.073 4.015 -3.730 3.026 -2.009 H7 XF4 43 XF4 H8 H8 H 0 1 N N N -9.639 -24.627 4.878 -3.214 6.949 -0.756 H8 XF4 44 XF4 H9 H9 H 0 1 N N N -8.996 -24.670 2.494 -1.706 6.244 1.057 H9 XF4 45 XF4 H10 H10 H 0 1 N N N -10.368 -25.939 0.851 -1.192 3.830 1.344 H10 XF4 46 XF4 H11 H11 H 0 1 N N N -11.133 -28.898 1.334 -4.125 1.467 0.504 H11 XF4 47 XF4 H13 H13 H 0 1 N N N -13.311 -30.299 -2.250 -4.084 -0.308 2.827 H13 XF4 48 XF4 H14 H14 H 0 1 N N N -19.179 -22.023 0.157 6.273 -1.886 2.263 H14 XF4 49 XF4 H15 H15 H 0 1 N N N -20.362 -19.942 -0.483 8.056 -1.036 3.734 H15 XF4 50 XF4 H16 H16 H 0 1 N N N -19.510 -18.552 -2.348 9.249 1.038 3.150 H16 XF4 51 XF4 H17 H17 H 0 1 N N N -17.448 -19.232 -3.554 8.663 2.258 1.093 H17 XF4 52 XF4 H18 H18 H 0 1 N N N -16.240 -21.280 -2.868 6.880 1.407 -0.378 H18 XF4 53 XF4 H19 H19 H 0 1 N N N -10.625 -33.376 0.364 -5.981 -3.677 -0.040 H19 XF4 54 XF4 H12 H12 H 0 1 N N N -12.516 -32.396 -3.181 -5.825 -1.800 3.496 H12 XF4 55 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal XF4 C35 C36 DOUB Y N 1 XF4 C35 C34 SING Y N 2 XF4 C36 C11 SING Y N 3 XF4 N29 C25 SING N N 4 XF4 N29 C30 SING N N 5 XF4 C34 C33 DOUB Y N 6 XF4 O31 C30 DOUB N N 7 XF4 C25 C24 DOUB N N 8 XF4 C30 N28 SING N N 9 XF4 O22 C9 SING N N 10 XF4 O22 C10 SING N N 11 XF4 C11 C10 SING N N 12 XF4 C11 C32 DOUB Y N 13 XF4 C8 C9 DOUB Y N 14 XF4 C8 C7 SING Y N 15 XF4 CL23 C7 SING N N 16 XF4 C9 C12 SING Y N 17 XF4 C33 C32 SING Y N 18 XF4 C7 C5 DOUB Y N 19 XF4 C12 C4 DOUB Y N 20 XF4 C5 C4 SING Y N 21 XF4 C24 C18 SING N N 22 XF4 C24 C26 SING N N 23 XF4 C4 C3 SING N N 24 XF4 C2 C3 DOUB N N 25 XF4 C2 C18 SING N N 26 XF4 N28 C26 SING N N 27 XF4 C3 C1 SING N N 28 XF4 C18 C17 DOUB N N 29 XF4 C26 O27 DOUB N N 30 XF4 C1 N19 SING N N 31 XF4 C1 O21 DOUB N N 32 XF4 C17 N19 SING N N 33 XF4 N19 C6 SING N N 34 XF4 C16 C6 DOUB Y N 35 XF4 C16 C15 SING Y N 36 XF4 C6 C13 SING Y N 37 XF4 C15 C14 DOUB Y N 38 XF4 C13 N20 DOUB Y N 39 XF4 C14 N20 SING Y N 40 XF4 C2 H1 SING N N 41 XF4 C5 H2 SING N N 42 XF4 C8 H3 SING N N 43 XF4 C10 H4 SING N N 44 XF4 C10 H5 SING N N 45 XF4 C12 H6 SING N N 46 XF4 C13 H7 SING N N 47 XF4 C14 H8 SING N N 48 XF4 C15 H9 SING N N 49 XF4 C16 H10 SING N N 50 XF4 C17 H11 SING N N 51 XF4 C25 H13 SING N N 52 XF4 C32 H14 SING N N 53 XF4 C33 H15 SING N N 54 XF4 C34 H16 SING N N 55 XF4 C35 H17 SING N N 56 XF4 C36 H18 SING N N 57 XF4 N28 H19 SING N N 58 XF4 N29 H12 SING N N 59 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor XF4 SMILES ACDLabs 12.01 "C2(N(c1cnccc1)C=C(C=C2c3cc(cc(c3)OCc4ccccc4)Cl)C=5C(=O)NC(NC=5)=O)=O" XF4 InChI InChI 1.03 "InChI=1S/C27H19ClN4O4/c28-20-9-18(10-22(12-20)36-16-17-5-2-1-3-6-17)23-11-19(24-14-30-27(35)31-25(24)33)15-32(26(23)34)21-7-4-8-29-13-21/h1-15H,16H2,(H2,30,31,33,35)" XF4 InChIKey InChI 1.03 IVPUTCRGJCQUQU-UHFFFAOYSA-N XF4 SMILES_CANONICAL CACTVS 3.385 "Clc1cc(OCc2ccccc2)cc(c1)C3=CC(=CN(C3=O)c4cccnc4)C5=CNC(=O)NC5=O" XF4 SMILES CACTVS 3.385 "Clc1cc(OCc2ccccc2)cc(c1)C3=CC(=CN(C3=O)c4cccnc4)C5=CNC(=O)NC5=O" XF4 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)COc2cc(cc(c2)Cl)C3=CC(=CN(C3=O)c4cccnc4)C5=CNC(=O)NC5=O" XF4 SMILES "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)COc2cc(cc(c2)Cl)C3=CC(=CN(C3=O)c4cccnc4)C5=CNC(=O)NC5=O" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier XF4 "SYSTEMATIC NAME" ACDLabs 12.01 "5-{3-[3-(benzyloxy)-5-chlorophenyl]-2-oxo[2H-[1,3'-bipyridine]]-5-yl}pyrimidine-2,4(1H,3H)-dione" XF4 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "5-[5-(3-chloranyl-5-phenylmethoxy-phenyl)-6-oxidanylidene-1-pyridin-3-yl-pyridin-3-yl]-1~{H}-pyrimidine-2,4-dione" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site XF4 "Create component" 2020-12-15 RCSB XF4 "Modify descriptor" 2020-12-16 RCSB XF4 "Initial release" 2021-03-03 RCSB ##