data_XF7 # _chem_comp.id XF7 _chem_comp.name "(5S)-5-(3-{3-chloro-5-[(2-chlorophenyl)methoxy]phenyl}-2-oxo[2H-[1,3'-bipyridine]]-5-yl)pyrimidine-2,4(3H,5H)-dione" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C27 H18 Cl2 N4 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-12-15 _chem_comp.pdbx_modified_date 2021-02-26 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 533.362 _chem_comp.one_letter_code ? _chem_comp.three_letter_code XF7 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7L13 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal XF7 C1 C1 C 0 1 N N N -20.359 -4.458 -27.856 -1.610 -1.426 0.592 C1 XF7 1 XF7 C2 C2 C 0 1 N N N -22.671 -4.247 -27.262 -2.187 0.877 0.152 C2 XF7 2 XF7 C3 C3 C 0 1 N N N -21.693 -4.245 -28.264 -1.240 -0.061 0.524 C3 XF7 3 XF7 C4 C4 C 0 1 Y N N -22.045 -3.996 -29.724 0.144 0.357 0.848 C4 XF7 4 XF7 C5 C5 C 0 1 Y N N -22.841 -2.891 -30.041 0.387 1.169 1.956 C5 XF7 5 XF7 C6 C6 C 0 1 Y N N -18.686 -4.891 -26.089 -3.216 -3.157 0.370 C6 XF7 6 XF7 C7 C7 C 0 1 Y N N -23.164 -2.633 -31.384 1.678 1.558 2.255 C7 XF7 7 XF7 C8 C8 C 0 1 Y N N -22.688 -3.475 -32.404 2.732 1.143 1.459 C8 XF7 8 XF7 C9 C9 C 0 1 Y N N -21.869 -4.566 -32.092 2.497 0.335 0.356 C9 XF7 9 XF7 C10 C10 C 0 1 N N N -20.155 -6.053 -32.987 4.840 0.375 -0.047 C10 XF7 10 XF7 C11 C11 C 0 1 Y N N -19.844 -6.715 -34.332 5.855 -0.168 -1.019 C11 XF7 11 XF7 C12 C12 C 0 1 Y N N -21.549 -4.825 -30.747 1.206 -0.064 0.051 C12 XF7 12 XF7 C13 C13 C 0 1 Y N N -17.817 -3.795 -26.032 -3.030 -3.992 -0.724 C13 XF7 13 XF7 C14 C14 C 0 1 Y N N -16.086 -5.274 -25.258 -3.858 -5.802 0.437 C14 XF7 14 XF7 C15 C15 C 0 1 Y N N -16.967 -6.362 -25.316 -4.072 -5.035 1.568 C15 XF7 15 XF7 C16 C16 C 0 1 Y N N -18.290 -6.180 -25.725 -3.749 -3.688 1.542 C16 XF7 16 XF7 C17 C17 C 0 1 N N N -21.043 -4.683 -25.541 -3.806 -0.891 -0.069 C17 XF7 17 XF7 C18 C18 C 0 1 N N N -22.358 -4.450 -25.913 -3.494 0.446 -0.149 C18 XF7 18 XF7 C24 C19 C 0 1 N N N -23.476 -4.477 -24.870 -4.530 1.431 -0.551 C24 XF7 19 XF7 C26 C20 C 0 1 N N N -23.359 -3.983 -23.546 -4.374 2.232 -1.772 C26 XF7 20 XF7 C25 C21 C 0 1 N N N -24.680 -5.066 -25.297 -5.652 1.610 0.201 C25 XF7 21 XF7 C30 C22 C 0 1 N N N -25.656 -4.674 -23.141 -6.426 3.251 -1.312 C30 XF7 22 XF7 C32 C23 C 0 1 Y N N -20.158 -8.053 -34.584 5.446 -0.965 -2.072 C32 XF7 23 XF7 C33 C24 C 0 1 Y N N -19.867 -8.607 -35.845 6.377 -1.464 -2.964 C33 XF7 24 XF7 C34 C25 C 0 1 Y N N -19.269 -7.833 -36.854 7.718 -1.167 -2.803 C34 XF7 25 XF7 C35 C26 C 0 1 Y N N -18.962 -6.489 -36.604 8.128 -0.370 -1.750 C35 XF7 26 XF7 C36 C27 C 0 1 Y N N -19.259 -5.944 -35.345 7.195 0.134 -0.861 C36 XF7 27 XF7 N19 N1 N 0 1 N N N -20.047 -4.672 -26.512 -2.868 -1.803 0.297 N19 XF7 28 XF7 N20 N2 N 0 1 Y N N -16.500 -3.983 -25.605 -3.352 -5.269 -0.658 N20 XF7 29 XF7 N28 N3 N 0 1 N N N -24.459 -4.091 -22.685 -5.342 3.114 -2.096 N28 XF7 30 XF7 N29 N4 N 0 1 N N N -25.767 -5.164 -24.445 -6.588 2.523 -0.195 N29 XF7 31 XF7 O21 O1 O 0 1 N N N -19.329 -4.466 -28.791 -0.784 -2.264 0.913 O21 XF7 32 XF7 O22 O2 O 0 1 N N N -21.383 -5.380 -33.135 3.534 -0.069 -0.423 O22 XF7 33 XF7 O27 O3 O 0 1 N N N -22.178 -3.398 -23.067 -3.390 2.103 -2.477 O27 XF7 34 XF7 O31 O4 O 0 1 N N N -26.763 -4.788 -22.306 -7.285 4.053 -1.625 O31 XF7 35 XF7 CL23 CL1 CL 0 0 N N N -24.209 -1.245 -31.810 1.980 2.569 3.634 CL23 XF7 36 XF7 CL24 CL2 CL 0 0 N N N -18.881 -4.241 -34.973 7.709 1.136 0.461 CL24 XF7 37 XF7 H1 H1 H 0 1 N N N -23.702 -4.086 -27.540 -1.928 1.924 0.094 H1 XF7 38 XF7 H2 H2 H 0 1 N N N -23.205 -2.241 -29.259 -0.433 1.495 2.578 H2 XF7 39 XF7 H3 H3 H 0 1 N N N -22.955 -3.279 -33.432 3.739 1.454 1.695 H3 XF7 40 XF7 H4 H4 H 0 1 N N N -20.235 -6.817 -32.199 5.070 0.018 0.957 H4 XF7 41 XF7 H5 H5 H 0 1 N N N -19.361 -5.338 -32.725 4.871 1.465 -0.061 H5 XF7 42 XF7 H6 H6 H 0 1 N N N -20.918 -5.666 -30.498 1.022 -0.693 -0.808 H6 XF7 43 XF7 H7 H7 H 0 1 N N N -18.162 -2.812 -26.316 -2.618 -3.592 -1.638 H7 XF7 44 XF7 H8 H8 H 0 1 N N N -15.067 -5.435 -24.939 -4.108 -6.852 0.451 H8 XF7 45 XF7 H9 H9 H 0 1 N N N -16.621 -7.348 -25.043 -4.487 -5.480 2.460 H9 XF7 46 XF7 H10 H10 H 0 1 N N N -18.983 -7.008 -25.759 -3.905 -3.065 2.411 H10 XF7 47 XF7 H11 H11 H 0 1 N N N -20.794 -4.871 -24.507 -4.809 -1.220 -0.301 H11 XF7 48 XF7 H13 H13 H 0 1 N N N -24.758 -5.447 -26.304 -5.800 1.033 1.102 H13 XF7 49 XF7 H14 H14 H 0 1 N N N -20.620 -8.657 -33.818 4.399 -1.198 -2.198 H14 XF7 50 XF7 H15 H15 H 0 1 N N N -20.107 -9.642 -36.040 6.057 -2.087 -3.786 H15 XF7 51 XF7 H16 H16 H 0 1 N N N -19.047 -8.271 -37.816 8.445 -1.561 -3.497 H16 XF7 52 XF7 H17 H17 H 0 1 N N N -18.503 -5.881 -37.369 9.175 -0.138 -1.625 H17 XF7 53 XF7 H18 H18 H 0 1 N N N -24.394 -3.754 -21.746 -5.256 3.652 -2.898 H18 XF7 54 XF7 H12 H12 H 0 1 N N N -26.621 -5.580 -24.759 -7.386 2.649 0.342 H12 XF7 55 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal XF7 C34 C35 DOUB Y N 1 XF7 C34 C33 SING Y N 2 XF7 C35 C36 SING Y N 3 XF7 C33 C32 DOUB Y N 4 XF7 C36 CL24 SING N N 5 XF7 C36 C11 DOUB Y N 6 XF7 C32 C11 SING Y N 7 XF7 C11 C10 SING N N 8 XF7 O22 C10 SING N N 9 XF7 O22 C9 SING N N 10 XF7 C8 C9 DOUB Y N 11 XF7 C8 C7 SING Y N 12 XF7 C9 C12 SING Y N 13 XF7 CL23 C7 SING N N 14 XF7 C7 C5 DOUB Y N 15 XF7 C12 C4 DOUB Y N 16 XF7 C5 C4 SING Y N 17 XF7 C4 C3 SING N N 18 XF7 O21 C1 DOUB N N 19 XF7 C3 C1 SING N N 20 XF7 C3 C2 DOUB N N 21 XF7 C1 N19 SING N N 22 XF7 C2 C18 SING N N 23 XF7 N19 C6 SING N N 24 XF7 N19 C17 SING N N 25 XF7 C6 C13 DOUB Y N 26 XF7 C6 C16 SING Y N 27 XF7 C13 N20 SING Y N 28 XF7 C18 C17 DOUB N N 29 XF7 C18 C24 SING N N 30 XF7 C16 C15 DOUB Y N 31 XF7 N20 C14 DOUB Y N 32 XF7 C15 C14 SING Y N 33 XF7 C25 C24 DOUB N N 34 XF7 C25 N29 SING N N 35 XF7 C24 C26 SING N N 36 XF7 N29 C30 SING N N 37 XF7 C26 O27 DOUB N N 38 XF7 C26 N28 SING N N 39 XF7 C30 N28 SING N N 40 XF7 C30 O31 DOUB N N 41 XF7 C2 H1 SING N N 42 XF7 C5 H2 SING N N 43 XF7 C8 H3 SING N N 44 XF7 C10 H4 SING N N 45 XF7 C10 H5 SING N N 46 XF7 C12 H6 SING N N 47 XF7 C13 H7 SING N N 48 XF7 C14 H8 SING N N 49 XF7 C15 H9 SING N N 50 XF7 C16 H10 SING N N 51 XF7 C17 H11 SING N N 52 XF7 C25 H13 SING N N 53 XF7 C32 H14 SING N N 54 XF7 C33 H15 SING N N 55 XF7 C34 H16 SING N N 56 XF7 C35 H17 SING N N 57 XF7 N28 H18 SING N N 58 XF7 N29 H12 SING N N 59 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor XF7 SMILES ACDLabs 12.01 "C2(N(c1cnccc1)C=C(C=C2c3cc(cc(c3)OCc4ccccc4Cl)Cl)C=5C(=O)NC(=O)NC=5)=O" XF7 InChI InChI 1.03 "InChI=1S/C27H18Cl2N4O4/c28-19-8-17(9-21(11-19)37-15-16-4-1-2-6-24(16)29)22-10-18(23-13-31-27(36)32-25(23)34)14-33(26(22)35)20-5-3-7-30-12-20/h1-14H,15H2,(H2,31,32,34,36)" XF7 InChIKey InChI 1.03 NFXZAFCZOMISJH-UHFFFAOYSA-N XF7 SMILES_CANONICAL CACTVS 3.385 "Clc1cc(OCc2ccccc2Cl)cc(c1)C3=CC(=CN(C3=O)c4cccnc4)C5=CNC(=O)NC5=O" XF7 SMILES CACTVS 3.385 "Clc1cc(OCc2ccccc2Cl)cc(c1)C3=CC(=CN(C3=O)c4cccnc4)C5=CNC(=O)NC5=O" XF7 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc(c(c1)COc2cc(cc(c2)Cl)C3=CC(=CN(C3=O)c4cccnc4)C5=CNC(=O)NC5=O)Cl" XF7 SMILES "OpenEye OEToolkits" 2.0.7 "c1ccc(c(c1)COc2cc(cc(c2)Cl)C3=CC(=CN(C3=O)c4cccnc4)C5=CNC(=O)NC5=O)Cl" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier XF7 "SYSTEMATIC NAME" ACDLabs 12.01 "5-(3-{3-chloro-5-[(2-chlorophenyl)methoxy]phenyl}-2-oxo[2H-[1,3'-bipyridine]]-5-yl)pyrimidine-2,4(1H,3H)-dione" XF7 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "5-[5-[3-chloranyl-5-[(2-chlorophenyl)methoxy]phenyl]-6-oxidanylidene-1-pyridin-3-yl-pyridin-3-yl]-1~{H}-pyrimidine-2,4-dione" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site XF7 "Create component" 2020-12-15 RCSB XF7 "Modify descriptor" 2020-12-16 RCSB XF7 "Initial release" 2021-03-03 RCSB ##