data_XF9 # _chem_comp.id XF9 _chem_comp.name "[3-chloro-5-(methanesulfonyl)phenyl]methyl (3aR,8aS)-2-(1H-benzotriazole-5-carbonyl)octahydropyrrolo[3,4-d]azepine-6(1H)-carboxylate" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C24 H26 Cl N5 O5 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-06-06 _chem_comp.pdbx_modified_date 2024-12-13 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 532.012 _chem_comp.one_letter_code ? _chem_comp.three_letter_code XF9 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7G4R _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal XF9 C02 C1 C 0 1 N N N N N N 14.691 10.317 -49.641 -1.306 3.743 -0.718 C02 XF9 1 XF9 C04 C2 C 0 1 N N N N N N 12.512 9.941 -48.368 0.384 3.352 1.090 C04 XF9 2 XF9 C05 C3 C 0 1 N N N N N N 11.535 9.941 -49.501 -0.778 3.405 2.088 C05 XF9 3 XF9 C06 C4 C 0 1 N N R N N N 12.845 11.822 -50.593 -2.998 2.845 0.993 C06 XF9 4 XF9 C07 C5 C 0 1 N N S N N N 11.526 11.272 -50.263 -1.798 2.322 1.889 C07 XF9 5 XF9 N09 N1 N 0 1 N N N N N N 11.256 12.388 -52.305 -2.760 0.474 0.764 N09 XF9 6 XF9 C10 C6 C 0 1 N N N N N N 12.568 12.814 -51.729 -3.806 1.491 1.033 C10 XF9 7 XF9 C13 C7 C 0 1 N N N N N N 10.496 13.070 -53.366 -2.956 -0.722 0.174 C13 XF9 8 XF9 C16 C8 C 0 1 Y N N N N N 9.013 11.190 -54.187 -4.530 -2.102 -1.179 C16 XF9 9 XF9 C17 C9 C 0 1 Y N N N N N 7.770 10.717 -54.638 -5.788 -2.523 -1.490 C17 XF9 10 XF9 C18 C10 C 0 1 Y N N N N N 8.103 13.414 -54.024 -5.406 -0.667 0.562 C18 XF9 11 XF9 C19 C11 C 0 1 Y N N N N N 6.835 12.930 -54.500 -6.700 -1.087 0.242 C19 XF9 12 XF9 C20 C12 C 0 1 Y N N N N N 6.676 11.602 -54.798 -6.885 -2.026 -0.789 C20 XF9 13 XF9 C24 C13 C 0 1 N N N N N N 14.102 8.140 -48.237 0.595 2.267 -1.097 C24 XF9 14 XF9 C27 C14 C 0 1 N N N N N N 13.217 6.204 -47.141 2.508 0.964 -1.681 C27 XF9 15 XF9 C28 C15 C 0 1 Y N N N N N 12.391 6.017 -45.906 3.733 0.373 -1.032 C28 XF9 16 XF9 N01 N2 N 0 1 N N N N N N 13.833 9.493 -48.782 -0.086 3.090 -0.276 N01 XF9 17 XF9 C03 C16 C 0 1 N N N N N N 13.923 10.732 -50.884 -2.506 2.873 -0.449 C03 XF9 18 XF9 C08 C17 C 0 1 N N N N N N 10.879 11.143 -51.605 -1.461 0.999 1.256 C08 XF9 19 XF9 C14 C18 C 0 1 Y N N N N N 9.180 12.543 -53.863 -4.326 -1.170 -0.152 C14 XF9 20 XF9 O15 O1 O 0 1 N N N N N N 10.960 14.104 -53.834 -2.005 -1.432 -0.091 O15 XF9 21 XF9 N21 N3 N 0 1 Y N N N N N 5.368 11.407 -55.235 -8.238 -2.248 -0.863 N21 XF9 22 XF9 N22 N4 N 0 1 Y N N N N N 4.730 12.619 -55.189 -8.832 -1.442 0.118 N22 XF9 23 XF9 N23 N5 N 0 1 Y N N N N N 5.635 13.562 -54.741 -7.921 -0.783 0.743 N23 XF9 24 XF9 O25 O2 O 0 1 N N N N N N 15.183 7.568 -48.462 0.144 1.990 -2.190 O25 XF9 25 XF9 O26 O3 O 0 1 N N N N N N 13.120 7.541 -47.468 1.776 1.752 -0.705 O26 XF9 26 XF9 C29 C19 C 0 1 Y N N N N N 12.085 4.710 -45.482 3.691 -0.909 -0.517 C29 XF9 27 XF9 C30 C20 C 0 1 Y N N N N N 11.316 4.534 -44.330 4.815 -1.453 0.077 C30 XF9 28 XF9 C31 C21 C 0 1 Y N N N N N 10.823 5.592 -43.598 5.980 -0.714 0.158 C31 XF9 29 XF9 C32 C22 C 0 1 Y N N N N N 11.138 6.908 -44.035 6.022 0.570 -0.358 C32 XF9 30 XF9 C33 C23 C 0 1 Y N N N N N 11.922 7.106 -45.185 4.899 1.111 -0.958 C33 XF9 31 XF9 CL34 CL1 CL 0 0 N N N N N N 10.544 8.269 -43.176 7.485 1.498 -0.257 CL34 XF9 32 XF9 S35 S1 S 0 1 N N N N N N 10.942 2.846 -43.828 4.761 -3.087 0.733 S35 XF9 33 XF9 O36 O4 O 0 1 N N N N N N 12.060 1.930 -44.110 5.757 -3.090 1.747 O36 XF9 34 XF9 O37 O5 O 0 1 N N N N N N 10.637 2.929 -42.380 3.392 -3.293 1.051 O37 XF9 35 XF9 C38 C24 C 0 1 N N N N N N 9.495 2.355 -44.805 5.260 -4.147 -0.651 C38 XF9 36 XF9 H40 H1 H 0 1 N N N N N N 15.006 11.215 -49.089 -1.421 4.687 -0.186 H40 XF9 37 XF9 H39 H2 H 0 1 N N N N N N 15.578 9.737 -49.936 -1.239 3.940 -1.788 H39 XF9 38 XF9 H44 H3 H 0 1 N N N N N N 12.141 9.269 -47.580 0.912 4.305 1.108 H44 XF9 39 XF9 H43 H4 H 0 1 N N N N N N 12.593 10.963 -47.970 1.071 2.560 1.387 H43 XF9 40 XF9 H45 H5 H 0 1 N N N N N N 11.804 9.135 -50.200 -0.375 3.322 3.097 H45 XF9 41 XF9 H46 H6 H 0 1 N N N N N N 10.528 9.757 -49.099 -1.274 4.372 1.994 H46 XF9 42 XF9 H11 H7 H 0 1 N N N N N N 13.200 12.403 -49.729 -3.514 3.737 1.349 H11 XF9 43 XF9 H12 H8 H 0 1 N N N N N N 10.965 12.008 -49.668 -2.222 2.096 2.867 H12 XF9 44 XF9 H50 H9 H 0 1 N N N N N N 12.504 13.840 -51.339 -4.251 1.336 2.016 H50 XF9 45 XF9 H49 H10 H 0 1 N N N N N N 13.360 12.760 -52.491 -4.570 1.474 0.256 H49 XF9 46 XF9 H51 H11 H 0 1 N N N N N N 9.844 10.508 -54.089 -3.684 -2.491 -1.726 H51 XF9 47 XF9 H52 H12 H 0 1 N N N N N N 7.647 9.668 -54.865 -5.936 -3.244 -2.280 H52 XF9 48 XF9 H53 H13 H 0 1 N N N N N N 8.222 14.461 -53.789 -5.248 0.053 1.352 H53 XF9 49 XF9 H55 H14 H 0 1 N N N N N N 12.826 5.582 -47.959 2.808 1.603 -2.511 H55 XF9 50 XF9 H56 H15 H 0 1 N N N N N N 14.265 5.934 -46.944 1.870 0.162 -2.052 H56 XF9 51 XF9 H41 H16 H 0 1 N N N N N N 14.636 11.131 -51.621 -3.324 3.216 -1.081 H41 XF9 52 XF9 H42 H17 H 0 1 N N N N N N 13.423 9.845 -51.300 -2.260 1.853 -0.744 H42 XF9 53 XF9 H47 H18 H 0 1 N N N N N N 11.262 10.262 -52.141 -0.770 1.140 0.425 H47 XF9 54 XF9 H48 H19 H 0 1 N N N N N N 9.786 11.066 -51.506 -1.034 0.322 1.995 H48 XF9 55 XF9 H54 H20 H 0 1 N N N N N N 4.967 10.539 -55.529 -8.694 -2.846 -1.476 H54 XF9 56 XF9 H57 H21 H 0 1 N N N N N N 12.440 3.856 -46.040 2.781 -1.487 -0.579 H57 XF9 57 XF9 H58 H22 H 0 1 N N N N N N 10.216 5.427 -42.720 6.858 -1.138 0.623 H58 XF9 58 XF9 H59 H23 H 0 1 N N N N N N 12.160 8.109 -45.508 4.933 2.111 -1.364 H59 XF9 59 XF9 H62 H24 H 0 1 N N N N N N 9.210 1.325 -44.546 6.263 -3.872 -0.977 H62 XF9 60 XF9 H61 H25 H 0 1 N N N N N N 8.657 3.033 -44.586 5.255 -5.189 -0.332 H61 XF9 61 XF9 H60 H26 H 0 1 N N N N N N 9.740 2.410 -45.876 4.562 -4.017 -1.478 H60 XF9 62 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal XF9 N01 C02 SING N N 1 XF9 C02 C03 SING N N 2 XF9 N01 C04 SING N N 3 XF9 C04 C05 SING N N 4 XF9 C03 C06 SING N N 5 XF9 C05 C07 SING N N 6 XF9 C06 C07 SING N N 7 XF9 C07 C08 SING N N 8 XF9 C08 N09 SING N N 9 XF9 C06 C10 SING N N 10 XF9 N09 C10 SING N N 11 XF9 N09 C13 SING N N 12 XF9 C13 C14 SING N N 13 XF9 C13 O15 DOUB N N 14 XF9 C14 C16 DOUB Y N 15 XF9 C16 C17 SING Y N 16 XF9 C14 C18 SING Y N 17 XF9 C18 C19 DOUB Y N 18 XF9 C17 C20 DOUB Y N 19 XF9 C19 C20 SING Y N 20 XF9 C20 N21 SING Y N 21 XF9 N21 N22 SING Y N 22 XF9 C19 N23 SING Y N 23 XF9 N22 N23 DOUB Y N 24 XF9 N01 C24 SING N N 25 XF9 C24 O25 DOUB N N 26 XF9 C24 O26 SING N N 27 XF9 O26 C27 SING N N 28 XF9 C27 C28 SING N N 29 XF9 C28 C29 DOUB Y N 30 XF9 C29 C30 SING Y N 31 XF9 C30 C31 DOUB Y N 32 XF9 C31 C32 SING Y N 33 XF9 C28 C33 SING Y N 34 XF9 C32 C33 DOUB Y N 35 XF9 C32 CL34 SING N N 36 XF9 C30 S35 SING N N 37 XF9 S35 O36 DOUB N N 38 XF9 S35 O37 DOUB N N 39 XF9 S35 C38 SING N N 40 XF9 C02 H40 SING N N 41 XF9 C02 H39 SING N N 42 XF9 C04 H44 SING N N 43 XF9 C04 H43 SING N N 44 XF9 C05 H45 SING N N 45 XF9 C05 H46 SING N N 46 XF9 C06 H11 SING N N 47 XF9 C07 H12 SING N N 48 XF9 C10 H50 SING N N 49 XF9 C10 H49 SING N N 50 XF9 C16 H51 SING N N 51 XF9 C17 H52 SING N N 52 XF9 C18 H53 SING N N 53 XF9 C27 H55 SING N N 54 XF9 C27 H56 SING N N 55 XF9 C03 H41 SING N N 56 XF9 C03 H42 SING N N 57 XF9 C08 H47 SING N N 58 XF9 C08 H48 SING N N 59 XF9 N21 H54 SING N N 60 XF9 C29 H57 SING N N 61 XF9 C31 H58 SING N N 62 XF9 C33 H59 SING N N 63 XF9 C38 H62 SING N N 64 XF9 C38 H61 SING N N 65 XF9 C38 H60 SING N N 66 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor XF9 SMILES ACDLabs 12.01 "CS(=O)(=O)c1cc(cc(Cl)c1)COC(=O)N1CCC2CN(CC2CC1)C(=O)c1cc2nn[NH]c2cc1" XF9 InChI InChI 1.06 "InChI=1S/C24H26ClN5O5S/c1-36(33,34)20-9-15(8-19(25)11-20)14-35-24(32)29-6-4-17-12-30(13-18(17)5-7-29)23(31)16-2-3-21-22(10-16)27-28-26-21/h2-3,8-11,17-18H,4-7,12-14H2,1H3,(H,26,27,28)" XF9 InChIKey InChI 1.06 PRIDUUZUQRLXCV-UHFFFAOYSA-N XF9 SMILES_CANONICAL CACTVS 3.385 "C[S](=O)(=O)c1cc(Cl)cc(COC(=O)N2CC[C@@H]3CN(C[C@@H]3CC2)C(=O)c4ccc5[nH]nnc5c4)c1" XF9 SMILES CACTVS 3.385 "C[S](=O)(=O)c1cc(Cl)cc(COC(=O)N2CC[CH]3CN(C[CH]3CC2)C(=O)c4ccc5[nH]nnc5c4)c1" XF9 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CS(=O)(=O)c1cc(cc(c1)Cl)COC(=O)N2CC[C@@H]3CN(C[C@@H]3CC2)C(=O)c4ccc5c(c4)nn[nH]5" XF9 SMILES "OpenEye OEToolkits" 2.0.7 "CS(=O)(=O)c1cc(cc(c1)Cl)COC(=O)N2CCC3CN(CC3CC2)C(=O)c4ccc5c(c4)nn[nH]5" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier XF9 "SYSTEMATIC NAME" ACDLabs 12.01 "[3-chloro-5-(methanesulfonyl)phenyl]methyl (3aR,8aS)-2-(1H-benzotriazole-5-carbonyl)octahydropyrrolo[3,4-d]azepine-6(1H)-carboxylate" XF9 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(3-chloranyl-5-methylsulfonyl-phenyl)methyl (3~{a}~{R},8~{a}~{S})-2-(1~{H}-benzotriazol-5-ylcarbonyl)-1,3,3~{a},4,5,7,8,8~{a}-octahydropyrrolo[3,4-d]azepine-6-carboxylate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site XF9 "Create component" 2023-06-06 RCSB XF9 "Initial release" 2024-12-18 RCSB #