data_XFB # _chem_comp.id XFB _chem_comp.name SKI-O-592 _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C25 H27 N7 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "cyclopropyl-[1-methyl-5-[[4-[3-methyl-4-[[(4S)-4-oxidanyl-1,2-oxazolidin-2-yl]methyl]pyrazol-1-yl]pyrimidin-2-yl]amino]indol-3-yl]methanone" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-11-01 _chem_comp.pdbx_modified_date 2024-11-01 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 473.527 _chem_comp.one_letter_code ? _chem_comp.three_letter_code XFB _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8WYW _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal XFB C1 C1 C 0 1 Y N N N N N -6.949 1.039 35.556 -5.478 1.949 -0.205 C1 XFB 1 XFB C10 C2 C 0 1 N N N N N N -10.630 0.878 32.333 -6.710 -2.620 -0.977 C10 XFB 2 XFB C11 C3 C 0 1 N N N N N N -10.779 0.805 30.812 -6.426 -3.924 -1.727 C11 XFB 3 XFB C12 C4 C 0 1 N N N N N N -11.791 0.084 31.721 -6.709 -3.951 -0.223 C12 XFB 4 XFB C13 C5 C 0 1 N N N N N N -7.477 3.297 36.061 -7.899 2.650 -0.296 C13 XFB 5 XFB C14 C6 C 0 1 Y N N N N N -5.339 -3.936 34.728 -0.663 0.839 0.703 C14 XFB 6 XFB C15 C7 C 0 1 Y N N N N N -6.478 -5.074 33.058 1.312 -0.214 1.252 C15 XFB 7 XFB C16 C8 C 0 1 Y N N N N N -5.671 -6.156 33.242 0.582 -1.257 1.821 C16 XFB 8 XFB C17 C9 C 0 1 Y N N N N N -4.682 -6.103 34.174 -0.799 -1.188 1.790 C17 XFB 9 XFB C18 C10 C 0 1 Y N N N N N -8.448 -4.224 31.705 3.530 0.708 0.742 C18 XFB 10 XFB C19 C11 C 0 1 Y N N N N N -9.243 -4.780 30.715 4.804 0.310 0.960 C19 XFB 11 XFB C2 C12 C 0 1 Y N N N N N -5.899 0.778 36.389 -4.784 3.133 0.023 C2 XFB 12 XFB C20 C13 C 0 1 Y N N N N N -8.797 -6.074 30.506 4.763 -0.918 1.631 C20 XFB 13 XFB C21 C14 C 0 1 N N N N N N -9.391 -7.082 29.503 5.959 -1.722 2.071 C21 XFB 14 XFB C22 C15 C 0 1 N N N N N N -10.469 -4.169 29.942 6.048 1.056 0.552 C22 XFB 15 XFB C23 C16 C 0 1 N N N N N N -10.962 -1.525 27.796 7.997 -1.146 -1.552 C23 XFB 16 XFB C24 C17 C 0 1 N N S N N N -9.526 -1.679 27.860 8.705 0.208 -1.783 C24 XFB 17 XFB C25 C18 C 0 1 N N N N N N -9.185 -2.646 28.930 7.744 1.253 -1.180 C25 XFB 18 XFB C3 C19 C 0 1 Y N N N N N -5.312 -0.475 36.393 -3.411 3.118 0.132 C3 XFB 19 XFB C4 C20 C 0 1 Y N N N N N -5.780 -1.481 35.523 -2.705 1.923 0.018 C4 XFB 20 XFB C5 C21 C 0 1 Y N N N N N -6.883 -1.234 34.652 -3.381 0.735 -0.209 C5 XFB 21 XFB C6 C22 C 0 1 Y N N N N N -7.470 0.046 34.667 -4.768 0.744 -0.321 C6 XFB 22 XFB C7 C23 C 0 1 Y N N N N N -8.633 2.007 34.471 -7.003 0.342 -0.563 C7 XFB 23 XFB C8 C24 C 0 1 Y N N N N N -8.573 0.720 33.972 -5.783 -0.301 -0.556 C8 XFB 24 XFB C9 C25 C 0 1 N N N N N N -9.458 0.061 32.904 -5.551 -1.686 -0.742 C9 XFB 25 XFB N1 N1 N 0 1 Y N N N N N -7.715 2.049 35.312 -6.821 1.659 -0.352 N1 XFB 26 XFB N2 N2 N 0 1 N N N N N N -5.101 -2.777 35.584 -1.310 1.921 0.131 N2 XFB 27 XFB N3 N3 N 0 1 Y N N N N N -6.321 -3.983 33.799 0.661 0.807 0.707 N3 XFB 28 XFB N4 N4 N 0 1 Y N N N N N -4.524 -5.003 34.901 -1.383 -0.138 1.235 N4 XFB 29 XFB N5 N5 N 0 1 Y N N N N N -7.534 -5.159 32.053 2.707 -0.241 1.260 N5 XFB 30 XFB N6 N6 N 0 1 Y N N N N N -7.759 -6.313 31.306 3.511 -1.248 1.811 N6 XFB 31 XFB N7 N7 N 0 1 N N N N N N -10.364 -2.981 29.509 6.588 0.470 -0.682 N7 XFB 32 XFB O1 O1 O 0 1 N N N N N N -9.236 -1.062 32.537 -4.417 -2.121 -0.712 O1 XFB 33 XFB O2 O2 O 0 1 N N N N N N -11.422 -2.653 28.615 7.111 -0.890 -0.438 O2 XFB 34 XFB O3 O3 O 0 1 N N N N N N -8.865 -0.373 28.106 8.887 0.444 -3.181 O3 XFB 35 XFB H1 H1 H 0 1 N N N N N N -10.869 1.833 32.824 -7.673 -2.140 -1.150 H1 XFB 36 XFB H2 H2 H 0 1 N N N N N N -10.061 0.222 30.216 -7.203 -4.301 -2.392 H2 XFB 37 XFB H3 H3 H 0 1 N N N N N N -11.086 1.697 30.246 -5.401 -4.106 -2.050 H3 XFB 38 XFB H4 H4 H 0 1 N N N N N N -12.821 0.461 31.806 -5.870 -4.152 0.443 H4 XFB 39 XFB H5 H5 H 0 1 N N N N N N -11.797 -1.015 31.776 -7.672 -4.347 0.101 H5 XFB 40 XFB H6 H6 H 0 1 N N N N N N -6.635 3.154 36.754 -8.251 2.745 0.732 H6 XFB 41 XFB H7 H7 H 0 1 N N N N N N -7.238 4.107 35.357 -7.525 3.613 -0.643 H7 XFB 42 XFB H8 H8 H 0 1 N N N N N N -8.380 3.561 36.631 -8.722 2.328 -0.933 H8 XFB 43 XFB H9 H9 H 0 1 N N N N N N -5.816 -7.049 32.652 1.083 -2.101 2.271 H9 XFB 44 XFB H10 H10 H 0 1 N N N N N N -4.029 -6.950 34.322 -1.395 -1.979 2.222 H10 XFB 45 XFB H11 H11 H 0 1 N N N N N N -8.541 -3.231 32.120 3.222 1.619 0.249 H11 XFB 46 XFB H12 H12 H 0 1 N N N N N N -5.526 1.550 37.045 -5.322 4.065 0.113 H12 XFB 47 XFB H13 H13 H 0 1 N N N N N N -8.826 -8.025 29.551 6.247 -1.423 3.079 H13 XFB 48 XFB H14 H14 H 0 1 N N N N N N -10.445 -7.273 29.755 5.707 -2.782 2.065 H14 XFB 49 XFB H15 H15 H 0 1 N N N N N N -9.327 -6.668 28.486 6.789 -1.542 1.388 H15 XFB 50 XFB H16 H16 H 0 1 N N N N N N -11.332 -4.194 30.624 5.803 2.104 0.380 H16 XFB 51 XFB H17 H17 H 0 1 N N N N N N -10.667 -4.817 29.076 6.792 0.983 1.345 H17 XFB 52 XFB H18 H18 H 0 1 N N N N N N -11.281 -0.563 28.224 7.427 -1.435 -2.435 H18 XFB 53 XFB H19 H19 H 0 1 N N N N N N -11.328 -1.606 26.762 8.722 -1.918 -1.294 H19 XFB 54 XFB H20 H20 H 0 1 N N N N N N -9.165 -2.078 26.900 9.665 0.228 -1.267 H20 XFB 55 XFB H21 H21 H 0 1 N N N N N N -8.701 -3.536 28.503 8.226 1.781 -0.358 H21 XFB 56 XFB H22 H22 H 0 1 N N N N N N -8.514 -2.182 29.667 7.422 1.958 -1.947 H22 XFB 57 XFB H23 H23 H 0 1 N N N N N N -4.492 -0.683 37.065 -2.878 4.040 0.309 H23 XFB 58 XFB H24 H24 H 0 1 N N N N N N -7.258 -2.008 33.999 -2.835 -0.192 -0.299 H24 XFB 59 XFB H25 H25 H 0 1 N N N N N N -9.318 2.795 34.195 -7.959 -0.139 -0.708 H25 XFB 60 XFB H26 H26 H 0 1 N N N N N N -4.398 -2.879 36.288 -0.797 2.679 -0.190 H26 XFB 61 XFB H27 H27 H 0 1 N N N N N N -7.924 -0.496 28.144 9.439 -0.216 -3.623 H27 XFB 62 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal XFB C23 C24 SING N N 1 XFB C23 O2 SING N N 2 XFB C24 O3 SING N N 3 XFB C24 C25 SING N N 4 XFB O2 N7 SING N N 5 XFB C25 N7 SING N N 6 XFB C21 C20 SING N N 7 XFB N7 C22 SING N N 8 XFB C22 C19 SING N N 9 XFB C20 C19 SING Y N 10 XFB C20 N6 DOUB Y N 11 XFB C19 C18 DOUB Y N 12 XFB C11 C12 SING N N 13 XFB C11 C10 SING N N 14 XFB N6 N5 SING Y N 15 XFB C18 N5 SING Y N 16 XFB C12 C10 SING N N 17 XFB N5 C15 SING N N 18 XFB C10 C9 SING N N 19 XFB O1 C9 DOUB N N 20 XFB C9 C8 SING N N 21 XFB C15 C16 DOUB Y N 22 XFB C15 N3 SING Y N 23 XFB C16 C17 SING Y N 24 XFB N3 C14 DOUB Y N 25 XFB C8 C7 DOUB Y N 26 XFB C8 C6 SING Y N 27 XFB C17 N4 DOUB Y N 28 XFB C7 N1 SING Y N 29 XFB C5 C6 DOUB Y N 30 XFB C5 C4 SING Y N 31 XFB C6 C1 SING Y N 32 XFB C14 N4 SING Y N 33 XFB C14 N2 SING N N 34 XFB N1 C1 SING Y N 35 XFB N1 C13 SING N N 36 XFB C4 N2 SING N N 37 XFB C4 C3 DOUB Y N 38 XFB C1 C2 DOUB Y N 39 XFB C2 C3 SING Y N 40 XFB C10 H1 SING N N 41 XFB C11 H2 SING N N 42 XFB C11 H3 SING N N 43 XFB C12 H4 SING N N 44 XFB C12 H5 SING N N 45 XFB C13 H6 SING N N 46 XFB C13 H7 SING N N 47 XFB C13 H8 SING N N 48 XFB C16 H9 SING N N 49 XFB C17 H10 SING N N 50 XFB C18 H11 SING N N 51 XFB C2 H12 SING N N 52 XFB C21 H13 SING N N 53 XFB C21 H14 SING N N 54 XFB C21 H15 SING N N 55 XFB C22 H16 SING N N 56 XFB C22 H17 SING N N 57 XFB C23 H18 SING N N 58 XFB C23 H19 SING N N 59 XFB C24 H20 SING N N 60 XFB C25 H21 SING N N 61 XFB C25 H22 SING N N 62 XFB C3 H23 SING N N 63 XFB C5 H24 SING N N 64 XFB C7 H25 SING N N 65 XFB N2 H26 SING N N 66 XFB O3 H27 SING N N 67 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor XFB InChI InChI 1.06 "InChI=1S/C25H27N7O3/c1-15-17(10-31-12-19(33)14-35-31)11-32(29-15)23-7-8-26-25(28-23)27-18-5-6-22-20(9-18)21(13-30(22)2)24(34)16-3-4-16/h5-9,11,13,16,19,33H,3-4,10,12,14H2,1-2H3,(H,26,27,28)/t19-/m0/s1" XFB InChIKey InChI 1.06 YCZUBLQESBVOSH-IBGZPJMESA-N XFB SMILES_CANONICAL CACTVS 3.385 "Cn1cc(C(=O)C2CC2)c3cc(Nc4nccc(n4)n5cc(CN6C[C@H](O)CO6)c(C)n5)ccc13" XFB SMILES CACTVS 3.385 "Cn1cc(C(=O)C2CC2)c3cc(Nc4nccc(n4)n5cc(CN6C[CH](O)CO6)c(C)n5)ccc13" XFB SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1c(cn(n1)c2ccnc(n2)Nc3ccc4c(c3)c(cn4C)C(=O)C5CC5)CN6C[C@@H](CO6)O" XFB SMILES "OpenEye OEToolkits" 2.0.7 "Cc1c(cn(n1)c2ccnc(n2)Nc3ccc4c(c3)c(cn4C)C(=O)C5CC5)CN6CC(CO6)O" # _pdbx_chem_comp_identifier.comp_id XFB _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "cyclopropyl-[1-methyl-5-[[4-[3-methyl-4-[[(4~{S})-4-oxidanyl-1,2-oxazolidin-2-yl]methyl]pyrazol-1-yl]pyrimidin-2-yl]amino]indol-3-yl]methanone" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site XFB "Create component" 2023-11-01 PDBJ XFB "Initial release" 2024-11-06 RCSB # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id XFB _pdbx_chem_comp_synonyms.name "cyclopropyl-[1-methyl-5-[[4-[3-methyl-4-[[(4S)-4-oxidanyl-1,2-oxazolidin-2-yl]methyl]pyrazol-1-yl]pyrimidin-2-yl]amino]indol-3-yl]methanone" _pdbx_chem_comp_synonyms.provenance PDB _pdbx_chem_comp_synonyms.type ? #