data_XFF # _chem_comp.id XFF _chem_comp.name "(2-methyl-2-phenylsulfanyl-propyl) ~{N}-[(2~{S})-1-[[(1~{S},2~{S})-1-[bis(oxidanyl)-oxidanylidene-$l^{5}-sulfanyl]-1-oxidanyl-3-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]propan-2-yl]amino]-4-methyl-1-oxidanylidene-pentan-2-yl]carbamate" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C24 H37 N3 O8 S2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-11-14 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 559.696 _chem_comp.one_letter_code ? _chem_comp.three_letter_code XFF _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag Y _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8F44 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal XFF C5 C1 C 0 1 N N N N N N 14.628 21.605 26.798 1.708 3.360 -3.537 C5 XFF 1 XFF C10 C2 C 0 1 N N S N N N 7.298 21.244 26.140 3.488 -2.331 -0.409 C10 XFF 2 XFF C1 C3 C 0 1 N N N N N N 10.895 24.266 26.182 -2.236 1.064 -0.273 C1 XFF 3 XFF C2 C4 C 0 1 N N S N N N 11.707 22.312 27.404 0.142 1.160 -0.797 C2 XFF 4 XFF C3 C5 C 0 1 N N N N N N 12.773 21.972 28.501 0.333 2.385 -1.693 C3 XFF 5 XFF C4 C6 C 0 1 N N N N N N 14.186 22.398 28.030 1.406 2.088 -2.742 C4 XFF 6 XFF C6 C7 C 0 1 N N N N N N 15.238 22.283 29.175 0.903 1.000 -3.692 C6 XFF 7 XFF C7 C8 C 0 1 N N N N N N 10.365 21.767 27.830 1.395 0.926 0.008 C7 XFF 8 XFF C8 C9 C 0 1 N N S N N N 8.635 19.943 27.897 3.671 0.081 0.217 C8 XFF 9 XFF C14 C10 C 0 1 N N S N N N 8.926 18.569 28.500 4.608 1.290 0.269 C14 XFF 10 XFF C13 C11 C 0 1 N N N N N N 6.410 22.003 27.162 3.205 -2.785 1.042 C13 XFF 11 XFF C12 C12 C 0 1 N N N N N N 5.357 22.654 26.329 3.176 -4.322 0.890 C12 XFF 12 XFF C11 C13 C 0 1 N N N N N N 6.361 21.084 24.945 4.187 -3.515 -1.039 C11 XFF 13 XFF C9 C14 C 0 1 N N N N N N 7.692 19.861 26.642 4.402 -1.104 -0.417 C9 XFF 14 XFF C15 C15 C 0 1 N N N N N N 10.716 26.221 24.845 -4.600 0.987 0.041 C15 XFF 15 XFF C16 C16 C 0 1 N N N N N N 10.971 27.754 25.010 -5.655 1.410 1.065 C16 XFF 16 XFF C17 C17 C 0 1 N N N N N N 9.952 28.374 26.022 -5.376 0.715 2.400 C17 XFF 17 XFF C19 C18 C 0 1 Y N N N N N 9.548 29.924 23.425 -7.130 -0.792 0.164 C19 XFF 18 XFF O3 O1 O 0 1 N N N N N N 7.715 18.021 29.040 3.885 2.433 0.731 O3 XFF 19 XFF O1 O2 O 0 1 N N N N N N 10.396 23.556 25.294 -2.418 0.498 -1.333 O1 XFF 20 XFF C20 C19 C 0 1 Y N N N N N 8.196 29.623 23.197 -7.323 -1.704 1.195 C20 XFF 21 XFF C22 C20 C 0 1 Y N N N N N 7.596 31.969 23.565 -6.872 -3.504 -0.317 C22 XFF 22 XFF C18 C21 C 0 1 N N N N N N 12.443 27.965 25.503 -5.600 2.926 1.258 C18 XFF 23 XFF C21 C22 C 0 1 Y N N N N N 7.222 30.639 23.259 -7.194 -3.057 0.951 C21 XFF 24 XFF C23 C23 C 0 1 Y N N N N N 8.963 32.269 23.807 -6.679 -2.600 -1.346 C23 XFF 25 XFF C24 C24 C 0 1 Y N N N N N 9.937 31.241 23.740 -6.807 -1.245 -1.109 C24 XFF 26 XFF N1 N1 N 0 1 N N N N N N 11.586 23.746 27.231 -0.985 1.389 0.110 N1 XFF 27 XFF N2 N2 N 0 1 N N N N N N 9.930 20.488 27.508 2.491 0.412 -0.586 N2 XFF 28 XFF N3 N3 N 0 1 N N N N N N 5.231 21.905 25.068 4.000 -4.615 -0.289 N3 XFF 29 XFF O2 O3 O 0 1 N N N N N N 6.524 20.352 23.967 4.822 -3.479 -2.072 O2 XFF 30 XFF O4 O4 O 0 1 N N N N N N 9.597 22.529 28.460 1.417 1.200 1.189 O4 XFF 31 XFF O5 O5 O 0 1 N N N N N N 10.756 25.623 26.116 -3.282 1.367 0.517 O5 XFF 32 XFF S1 S1 S 0 1 N N N N N N 10.781 28.588 23.344 -7.301 0.935 0.470 S1 XFF 33 XFF S2 S2 S 0 1 N Y N N N N 9.750 17.504 27.284 5.980 0.943 1.403 S2 XFF 34 XFF H1 H1 H 0 1 N N N N N N 15.633 21.932 26.492 2.067 4.135 -2.860 H1 XFF 35 XFF H2 H2 H 0 1 N N N N N N 14.650 20.532 27.041 2.473 3.148 -4.284 H2 XFF 36 XFF H3 H3 H 0 1 N N N N N N 13.919 21.780 25.976 0.800 3.702 -4.033 H3 XFF 37 XFF H4 H4 H 0 1 N N N N N N 8.184 21.839 25.874 2.556 -2.114 -0.930 H4 XFF 38 XFF H5 H5 H 0 1 N N N N N N 12.011 21.838 26.459 -0.061 0.286 -1.415 H5 XFF 39 XFF H6 H6 H 0 1 N N N N N N 12.523 22.508 29.428 -0.607 2.621 -2.192 H6 XFF 40 XFF H7 H7 H 0 1 N N N N N N 12.765 20.888 28.691 0.644 3.235 -1.085 H7 XFF 41 XFF H8 H8 H 0 1 N N N N N N 14.131 23.458 27.742 2.314 1.746 -2.246 H8 XFF 42 XFF H9 H9 H 0 1 N N N N N N 14.897 22.861 30.047 0.037 1.369 -4.242 H9 XFF 43 XFF H10 H10 H 0 1 N N N N N N 15.357 21.227 29.459 1.694 0.737 -4.395 H10 XFF 44 XFF H11 H11 H 0 1 N N N N N N 16.203 22.680 28.827 0.620 0.118 -3.118 H11 XFF 45 XFF H12 H12 H 0 1 N N N N N N 8.162 20.583 28.656 3.361 -0.182 1.228 H12 XFF 46 XFF H13 H13 H 0 1 N N N N N N 9.658 18.700 29.310 5.001 1.488 -0.728 H13 XFF 47 XFF H14 H14 H 0 1 N N N N N N 5.960 21.303 27.881 4.006 -2.474 1.712 H14 XFF 48 XFF H15 H15 H 0 1 N N N N N N 6.999 22.758 27.704 2.242 -2.409 1.387 H15 XFF 49 XFF H16 H16 H 0 1 N N N N N N 5.643 23.695 26.116 3.602 -4.796 1.775 H16 XFF 50 XFF H17 H17 H 0 1 N N N N N N 4.397 22.640 26.866 2.154 -4.667 0.733 H17 XFF 51 XFF H18 H18 H 0 1 N N N N N N 6.781 19.309 26.916 5.306 -1.320 0.154 H18 XFF 52 XFF H19 H19 H 0 1 N N N N N N 8.217 19.326 25.837 4.671 -0.858 -1.444 H19 XFF 53 XFF H20 H20 H 0 1 N N N N N N 9.729 26.056 24.388 -4.640 -0.094 -0.097 H20 XFF 54 XFF H21 H21 H 0 1 N N N N N N 11.495 25.782 24.204 -4.799 1.482 -0.910 H21 XFF 55 XFF H22 H22 H 0 1 N N N N N N 10.063 27.885 27.001 -4.360 0.943 2.723 H22 XFF 56 XFF H23 H23 H 0 1 N N N N N N 10.148 29.451 26.126 -6.083 1.071 3.149 H23 XFF 57 XFF H24 H24 H 0 1 N N N N N N 8.928 28.222 25.650 -5.486 -0.363 2.279 H24 XFF 58 XFF H25 H25 H 0 1 N N N N N N 7.342 18.631 29.666 3.135 2.677 0.172 H25 XFF 59 XFF H26 H26 H 0 1 N N N N N N 7.901 28.608 22.973 -7.574 -1.355 2.186 H26 XFF 60 XFF H27 H27 H 0 1 N N N N N N 6.850 32.748 23.614 -6.771 -4.563 -0.505 H27 XFF 61 XFF H28 H28 H 0 1 N N N N N N 12.575 27.481 26.482 -5.880 3.421 0.329 H28 XFF 62 XFF H29 H29 H 0 1 N N N N N N 13.140 27.520 24.777 -6.292 3.217 2.048 H29 XFF 63 XFF H30 H30 H 0 1 N N N N N N 12.648 29.042 25.595 -4.587 3.221 1.536 H30 XFF 64 XFF H31 H31 H 0 1 N N N N N N 6.185 30.402 23.072 -7.344 -3.766 1.751 H31 XFF 65 XFF H32 H32 H 0 1 N N N N N N 9.261 33.280 24.042 -6.428 -2.953 -2.335 H32 XFF 66 XFF H33 H33 H 0 1 N N N N N N 10.976 31.467 23.930 -6.656 -0.539 -1.912 H33 XFF 67 XFF H34 H34 H 0 1 N N N N N N 12.016 24.361 27.892 -0.831 1.774 0.987 H34 XFF 68 XFF H35 H35 H 0 1 N N N N N N 10.543 19.904 26.976 2.498 0.262 -1.544 H35 XFF 69 XFF H36 H36 H 0 1 N N N N N N 4.475 21.970 24.416 4.363 -5.489 -0.499 H36 XFF 70 XFF O6 O6 O 0 1 N Y N N N N 9.697 15.889 28.097 6.883 2.039 1.444 O6 XFF 71 XFF O7 O7 O 0 1 N Y N N N N ? ? ? 5.500 0.345 2.599 O7 XFF 72 XFF O8 O8 O 0 1 N Y N N N N ? ? ? 6.767 -0.166 0.719 O8 XFF 73 XFF H38 H38 H 0 1 N N N N N N ? ? ? 7.543 -0.461 1.215 H38 XFF 74 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal XFF C20 C21 DOUB Y N 1 XFF C20 C19 SING Y N 2 XFF C21 C22 SING Y N 3 XFF S1 C19 SING N N 4 XFF S1 C16 SING N N 5 XFF C19 C24 DOUB Y N 6 XFF C22 C23 DOUB Y N 7 XFF C24 C23 SING Y N 8 XFF O2 C11 DOUB N N 9 XFF C15 C16 SING N N 10 XFF C15 O5 SING N N 11 XFF C11 N3 SING N N 12 XFF C11 C10 SING N N 13 XFF C16 C18 SING N N 14 XFF C16 C17 SING N N 15 XFF N3 C12 SING N N 16 XFF O1 C1 DOUB N N 17 XFF O5 C1 SING N N 18 XFF C10 C9 SING N N 19 XFF C10 C13 SING N N 20 XFF C1 N1 SING N N 21 XFF C12 C13 SING N N 22 XFF C9 C8 SING N N 23 XFF C5 C4 SING N N 24 XFF N1 C2 SING N N 25 XFF S2 C14 SING N N 26 XFF C2 C7 SING N N 27 XFF C2 C3 SING N N 28 XFF N2 C7 SING N N 29 XFF N2 C8 SING N N 30 XFF C7 O4 DOUB N N 31 XFF C8 C14 SING N N 32 XFF C4 C3 SING N N 33 XFF C4 C6 SING N N 34 XFF C14 O3 SING N N 35 XFF C5 H1 SING N N 36 XFF C5 H2 SING N N 37 XFF C5 H3 SING N N 38 XFF C10 H4 SING N N 39 XFF C2 H5 SING N N 40 XFF C3 H6 SING N N 41 XFF C3 H7 SING N N 42 XFF C4 H8 SING N N 43 XFF C6 H9 SING N N 44 XFF C6 H10 SING N N 45 XFF C6 H11 SING N N 46 XFF C8 H12 SING N N 47 XFF C14 H13 SING N N 48 XFF C13 H14 SING N N 49 XFF C13 H15 SING N N 50 XFF C12 H16 SING N N 51 XFF C12 H17 SING N N 52 XFF C9 H18 SING N N 53 XFF C9 H19 SING N N 54 XFF C15 H20 SING N N 55 XFF C15 H21 SING N N 56 XFF C17 H22 SING N N 57 XFF C17 H23 SING N N 58 XFF C17 H24 SING N N 59 XFF O3 H25 SING N N 60 XFF C20 H26 SING N N 61 XFF C22 H27 SING N N 62 XFF C18 H28 SING N N 63 XFF C18 H29 SING N N 64 XFF C18 H30 SING N N 65 XFF C21 H31 SING N N 66 XFF C23 H32 SING N N 67 XFF C24 H33 SING N N 68 XFF N1 H34 SING N N 69 XFF N2 H35 SING N N 70 XFF N3 H36 SING N N 71 XFF S2 O6 DOUB N N 72 XFF S2 O7 DOUB N N 73 XFF S2 O8 SING N N 74 XFF O8 H38 SING N N 75 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor XFF SMILES ACDLabs 12.01 "CC(C)CC(NC(=O)OCC(C)(C)Sc1ccccc1)C(=O)NC(CC1CCNC1=O)C(O)S(=O)(=O)O" XFF InChI InChI 1.06 "InChI=1S/C24H37N3O8S2/c1-15(2)12-18(27-23(31)35-14-24(3,4)36-17-8-6-5-7-9-17)21(29)26-19(22(30)37(32,33)34)13-16-10-11-25-20(16)28/h5-9,15-16,18-19,22,30H,10-14H2,1-4H3,(H,25,28)(H,26,29)(H,27,31)(H,32,33,34)/t16-,18-,19-,22-/m0/s1" XFF InChIKey InChI 1.06 AGWHKDXHVADVIY-FUOQNJDISA-N XFF SMILES_CANONICAL CACTVS 3.385 "CC(C)C[C@H](NC(=O)OCC(C)(C)Sc1ccccc1)C(=O)N[C@@H](C[C@@H]2CCNC2=O)[C@@H](O)[S](O)(=O)=O" XFF SMILES CACTVS 3.385 "CC(C)C[CH](NC(=O)OCC(C)(C)Sc1ccccc1)C(=O)N[CH](C[CH]2CCNC2=O)[CH](O)[S](O)(=O)=O" XFF SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)C[C@@H](C(=O)N[C@@H](C[C@@H]1CCNC1=O)[C@@H](O)S(=O)(=O)O)NC(=O)OCC(C)(C)Sc2ccccc2" XFF SMILES "OpenEye OEToolkits" 2.0.7 "CC(C)CC(C(=O)NC(CC1CCNC1=O)C(O)S(=O)(=O)O)NC(=O)OCC(C)(C)Sc2ccccc2" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier XFF "SYSTEMATIC NAME" ACDLabs 12.01 "(1S,2S)-1-hydroxy-2-[(N-{[2-methyl-2-(phenylsulfanyl)propoxy]carbonyl}-L-leucyl)amino]-3-[(3S)-2-oxopyrrolidin-3-yl]propane-1-sulfonic acid" XFF "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(1~{S},2~{S})-2-[[(2~{S})-4-methyl-2-[(2-methyl-2-phenylsulfanyl-propoxy)carbonylamino]pentanoyl]amino]-1-oxidanyl-3-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]propane-1-sulfonic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site XFF "Create component" 2022-11-14 RCSB XFF "Initial release" 2022-11-23 RCSB XFF "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id XFF _pdbx_chem_comp_pcm.modified_residue_id CYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C14 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #