data_XFR # _chem_comp.id XFR _chem_comp.name "(1R,2S)-1-hydroxy-2-[(N-{[2-methyl-2-(phenylsulfanyl)propoxy]carbonyl}-L-leucyl)amino]-3-[(3S)-2-oxopyrrolidin-3-yl]propane-1-sulfonic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C24 H37 N3 O8 S2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-11-14 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 559.696 _chem_comp.one_letter_code ? _chem_comp.three_letter_code XFR _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag Y _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8F44 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal XFR C11 C1 C 0 1 N N N N N N 6.072 21.076 25.143 -4.023 -2.119 -1.644 C11 XFR 1 XFR C12 C2 C 0 1 N N N N N N 5.154 22.643 26.616 -6.005 -3.329 -1.668 C12 XFR 2 XFR C13 C3 C 0 1 N N N N N N 6.339 22.073 27.318 -6.325 -1.986 -2.359 C13 XFR 3 XFR C5 C4 C 0 1 N N N N N N 15.435 22.117 29.149 -0.062 -3.224 2.016 C5 XFR 4 XFR C10 C5 C 0 1 N N S N N N 7.106 21.243 26.256 -5.119 -1.117 -1.932 C10 XFR 5 XFR C1 C6 C 0 1 N N N N N N 10.923 24.252 26.423 1.664 -0.691 0.321 C1 XFR 6 XFR C2 C7 C 0 1 N N S N N N 11.835 22.156 27.504 -0.755 -0.683 0.612 C2 XFR 7 XFR C3 C8 C 0 1 N N N N N N 12.991 21.727 28.488 -0.966 -0.896 2.112 C3 XFR 8 XFR C4 C9 C 0 1 N N N N N N 14.381 22.200 28.015 0.111 -1.842 2.649 C4 XFR 9 XFR C6 C10 C 0 1 N N N N N N 14.847 21.428 26.775 -0.023 -1.957 4.169 C6 XFR 10 XFR C7 C11 C 0 1 N N N N N N 10.503 21.552 28.051 -1.884 0.148 0.060 C7 XFR 11 XFR C8 C12 C 0 1 N N S N N N 8.554 19.917 27.925 -4.260 0.559 -0.289 C8 XFR 12 XFR C14 C13 C 0 1 N N R N N N 8.858 18.487 28.507 -4.661 1.501 0.848 C14 XFR 13 XFR C9 C14 C 0 1 N N N N N N 7.506 19.852 26.776 -5.457 -0.315 -0.673 C9 XFR 14 XFR C15 C15 C 0 1 N N N N N N 10.863 26.227 24.985 4.029 -0.873 0.054 C15 XFR 15 XFR C16 C16 C 0 1 N N N N N N 11.130 27.792 25.095 5.248 0.021 -0.180 C16 XFR 16 XFR O3 O1 O 0 1 N N N N N N 9.723 18.720 29.636 -5.220 0.741 1.921 O3 XFR 17 XFR O1 O2 O 0 1 N N N N N N 10.153 23.613 25.687 1.645 -1.900 0.442 O1 XFR 18 XFR N1 N1 N 0 1 N N N N N N 11.755 23.633 27.377 0.516 0.011 0.391 N1 XFR 19 XFR N2 N2 N 0 1 N N N N N N 9.811 20.503 27.420 -3.154 -0.295 0.150 N2 XFR 20 XFR N3 N3 N 0 1 N N N N N N 4.937 21.884 25.361 -4.547 -3.349 -1.506 N3 XFR 21 XFR O2 O3 O 0 1 N N N N N N 6.151 20.333 24.160 -2.844 -1.852 -1.555 O2 XFR 22 XFR O4 O4 O 0 1 N N N N N N 10.038 22.028 29.115 -1.650 1.215 -0.467 O4 XFR 23 XFR O5 O5 O 0 1 N N N N N N 10.960 25.633 26.295 2.832 -0.053 0.118 O5 XFR 24 XFR S2 S1 S 0 1 N Y N N N N 9.750 17.504 27.284 -5.891 2.689 0.243 S2 XFR 25 XFR C17 C17 C 0 1 N N N N N N 10.103 28.448 26.042 5.078 0.780 -1.498 C17 XFR 26 XFR C18 C18 C 0 1 N N N N N N 12.578 28.024 25.623 5.376 1.021 0.971 C18 XFR 27 XFR S1 S2 S 0 1 N N N N N N 11.010 28.616 23.410 6.743 -1.003 -0.261 S1 XFR 28 XFR C19 C19 C 0 1 Y N N N N N 9.791 29.981 23.400 8.028 0.186 -0.464 C19 XFR 29 XFR C20 C20 C 0 1 Y N N N N N 8.434 29.685 23.183 7.716 1.536 -0.572 C20 XFR 30 XFR C21 C21 C 0 1 Y N N N N N 7.472 30.716 23.172 8.726 2.464 -0.731 C21 XFR 31 XFR C22 C22 C 0 1 Y N N N N N 7.861 32.058 23.384 10.045 2.053 -0.783 C22 XFR 32 XFR C23 C23 C 0 1 Y N N N N N 9.229 32.355 23.607 10.358 0.710 -0.675 C23 XFR 33 XFR C24 C24 C 0 1 Y N N N N N 10.191 31.314 23.617 9.355 -0.224 -0.510 C24 XFR 34 XFR H1 H1 H 0 1 N N N N N N 5.336 23.702 26.382 -6.493 -3.379 -0.695 H1 XFR 35 XFR H2 H2 H 0 1 N N N N N N 4.266 22.557 27.259 -6.328 -4.162 -2.293 H2 XFR 36 XFR H3 H3 H 0 1 N N N N N N 6.017 21.427 28.149 -6.358 -2.102 -3.442 H3 XFR 37 XFR H4 H4 H 0 1 N N N N N N 6.978 22.880 27.707 -7.260 -1.568 -1.986 H4 XFR 38 XFR H5 H5 H 0 1 N N N N N N 15.077 22.678 30.025 0.033 -3.142 0.933 H5 XFR 39 XFR H6 H6 H 0 1 N N N N N N 15.592 21.064 29.427 0.705 -3.898 2.398 H6 XFR 40 XFR H7 H7 H 0 1 N N N N N N 16.384 22.550 28.800 -1.048 -3.617 2.265 H7 XFR 41 XFR H8 H8 H 0 1 N N N N N N 7.987 21.794 25.895 -4.823 -0.449 -2.741 H8 XFR 42 XFR H9 H9 H 0 1 N N N N N N 12.039 21.714 26.518 -0.734 -1.649 0.107 H9 XFR 43 XFR H10 H10 H 0 1 N N N N N N 12.790 22.161 29.478 -0.898 0.061 2.628 H10 XFR 44 XFR H11 H11 H 0 1 N N N N N N 13.000 20.630 28.564 -1.950 -1.332 2.283 H11 XFR 45 XFR H12 H12 H 0 1 N N N N N N 14.289 23.259 27.731 1.097 -1.449 2.400 H12 XFR 46 XFR H13 H13 H 0 1 N N N N N N 15.839 21.791 26.468 -1.009 -2.350 4.418 H13 XFR 47 XFR H14 H14 H 0 1 N N N N N N 14.907 20.355 27.012 0.744 -2.631 4.551 H14 XFR 48 XFR H15 H15 H 0 1 N N N N N N 14.130 21.583 25.956 0.100 -0.973 4.620 H15 XFR 49 XFR H16 H16 H 0 1 N N N N N N 8.151 20.544 28.734 -3.946 1.145 -1.153 H16 XFR 50 XFR H17 H17 H 0 1 N N N N N N 7.931 17.957 28.770 -3.781 2.037 1.202 H17 XFR 51 XFR H18 H18 H 0 1 N N N N N N 6.605 19.344 27.150 -6.322 0.319 -0.867 H18 XFR 52 XFR H19 H19 H 0 1 N N N N N N 7.933 19.275 25.943 -5.684 -0.999 0.144 H19 XFR 53 XFR H20 H20 H 0 1 N N N N N N 9.856 26.054 24.577 3.938 -1.585 -0.766 H20 XFR 54 XFR H21 H21 H 0 1 N N N N N N 11.612 25.773 24.319 4.150 -1.413 0.993 H21 XFR 55 XFR H22 H22 H 0 1 N N N N N N 9.263 19.237 30.287 -4.616 0.084 2.294 H22 XFR 56 XFR H23 H23 H 0 1 N N N N N N 12.307 24.204 27.985 0.531 0.976 0.295 H23 XFR 57 XFR H24 H24 H 0 1 N N N N N N 10.195 20.130 26.575 -3.335 -1.178 0.507 H24 XFR 58 XFR H25 H25 H 0 1 N N N N N N 4.129 21.936 24.774 -4.027 -4.148 -1.323 H25 XFR 59 XFR H27 H27 H 0 1 N N N N N N 10.163 27.975 27.033 4.432 1.643 -1.339 H27 XFR 60 XFR H28 H28 H 0 1 N N N N N N 10.324 29.522 26.135 6.053 1.116 -1.852 H28 XFR 61 XFR H29 H29 H 0 1 N N N N N N 9.090 28.316 25.633 4.629 0.122 -2.241 H29 XFR 62 XFR H30 H30 H 0 1 N N N N N N 12.688 27.554 26.612 5.334 0.488 1.921 H30 XFR 63 XFR H31 H31 H 0 1 N N N N N N 13.299 27.578 24.923 6.327 1.548 0.891 H31 XFR 64 XFR H32 H32 H 0 1 N N N N N N 12.769 29.104 25.707 4.557 1.739 0.921 H32 XFR 65 XFR H33 H33 H 0 1 N N N N N N 8.126 28.662 23.024 6.686 1.858 -0.533 H33 XFR 66 XFR H34 H34 H 0 1 N N N N N N 6.432 30.479 23.001 8.485 3.514 -0.816 H34 XFR 67 XFR H35 H35 H 0 1 N N N N N N 7.125 32.848 23.376 10.832 2.781 -0.907 H35 XFR 68 XFR H36 H36 H 0 1 N N N N N N 9.539 33.377 23.770 11.390 0.392 -0.716 H36 XFR 69 XFR H37 H37 H 0 1 N N N N N N 11.232 31.543 23.791 9.601 -1.272 -0.421 H37 XFR 70 XFR O6 O6 O 0 1 N Y N N N N 9.697 15.889 28.097 -5.248 3.306 -0.991 O6 XFR 71 XFR O7 O7 O 0 1 N Y N N N N ? ? ? -7.034 2.011 -0.259 O7 XFR 72 XFR O8 O8 O 0 1 N Y N N N N ? ? ? -6.023 3.775 1.150 O8 XFR 73 XFR H26 H26 H 0 1 N N N N N N 10.141 15.247 27.556 -5.797 3.971 -1.429 H26 XFR 74 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal XFR C21 C20 DOUB Y N 1 XFR C21 C22 SING Y N 2 XFR C20 C19 SING Y N 3 XFR C22 C23 DOUB Y N 4 XFR C19 S1 SING N N 5 XFR C19 C24 DOUB Y N 6 XFR S1 C16 SING N N 7 XFR C23 C24 SING Y N 8 XFR O2 C11 DOUB N N 9 XFR C15 C16 SING N N 10 XFR C15 O5 SING N N 11 XFR C16 C18 SING N N 12 XFR C16 C17 SING N N 13 XFR C11 N3 SING N N 14 XFR C11 C10 SING N N 15 XFR N3 C12 SING N N 16 XFR O1 C1 DOUB N N 17 XFR C10 C9 SING N N 18 XFR C10 C13 SING N N 19 XFR O5 C1 SING N N 20 XFR C1 N1 SING N N 21 XFR C12 C13 SING N N 22 XFR C6 C4 SING N N 23 XFR C9 C8 SING N N 24 XFR S2 C14 SING N N 25 XFR N1 C2 SING N N 26 XFR N2 C8 SING N N 27 XFR N2 C7 SING N N 28 XFR C2 C7 SING N N 29 XFR C2 C3 SING N N 30 XFR C8 C14 SING N N 31 XFR C4 C3 SING N N 32 XFR C4 C5 SING N N 33 XFR C7 O4 DOUB N N 34 XFR C14 O3 SING N N 35 XFR C12 H1 SING N N 36 XFR C12 H2 SING N N 37 XFR C13 H3 SING N N 38 XFR C13 H4 SING N N 39 XFR C5 H5 SING N N 40 XFR C5 H6 SING N N 41 XFR C5 H7 SING N N 42 XFR C10 H8 SING N N 43 XFR C2 H9 SING N N 44 XFR C3 H10 SING N N 45 XFR C3 H11 SING N N 46 XFR C4 H12 SING N N 47 XFR C6 H13 SING N N 48 XFR C6 H14 SING N N 49 XFR C6 H15 SING N N 50 XFR C8 H16 SING N N 51 XFR C14 H17 SING N N 52 XFR C9 H18 SING N N 53 XFR C9 H19 SING N N 54 XFR C15 H20 SING N N 55 XFR C15 H21 SING N N 56 XFR O3 H22 SING N N 57 XFR N1 H23 SING N N 58 XFR N2 H24 SING N N 59 XFR N3 H25 SING N N 60 XFR C17 H27 SING N N 61 XFR C17 H28 SING N N 62 XFR C17 H29 SING N N 63 XFR C18 H30 SING N N 64 XFR C18 H31 SING N N 65 XFR C18 H32 SING N N 66 XFR C20 H33 SING N N 67 XFR C21 H34 SING N N 68 XFR C22 H35 SING N N 69 XFR C23 H36 SING N N 70 XFR C24 H37 SING N N 71 XFR S2 O6 SING N N 72 XFR S2 O7 DOUB N N 73 XFR S2 O8 DOUB N N 74 XFR O6 H26 SING N N 75 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor XFR SMILES ACDLabs 12.01 "CC(C)CC(NC(=O)OCC(C)(C)Sc1ccccc1)C(=O)NC(CC1CCNC1=O)C(O)S(=O)(=O)O" XFR InChI InChI 1.06 "InChI=1S/C24H37N3O8S2/c1-15(2)12-18(27-23(31)35-14-24(3,4)36-17-8-6-5-7-9-17)21(29)26-19(22(30)37(32,33)34)13-16-10-11-25-20(16)28/h5-9,15-16,18-19,22,30H,10-14H2,1-4H3,(H,25,28)(H,26,29)(H,27,31)(H,32,33,34)/t16-,18-,19-,22+/m0/s1" XFR InChIKey InChI 1.06 AGWHKDXHVADVIY-JLEJFLCFSA-N XFR SMILES_CANONICAL CACTVS 3.385 "CC(C)C[C@H](NC(=O)OCC(C)(C)Sc1ccccc1)C(=O)N[C@@H](C[C@@H]2CCNC2=O)[C@H](O)[S](O)(=O)=O" XFR SMILES CACTVS 3.385 "CC(C)C[CH](NC(=O)OCC(C)(C)Sc1ccccc1)C(=O)N[CH](C[CH]2CCNC2=O)[CH](O)[S](O)(=O)=O" XFR SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)C[C@@H](C(=O)N[C@@H](C[C@@H]1CCNC1=O)[C@H](O)S(=O)(=O)O)NC(=O)OCC(C)(C)Sc2ccccc2" XFR SMILES "OpenEye OEToolkits" 2.0.7 "CC(C)CC(C(=O)NC(CC1CCNC1=O)C(O)S(=O)(=O)O)NC(=O)OCC(C)(C)Sc2ccccc2" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier XFR "SYSTEMATIC NAME" ACDLabs 12.01 "(1R,2S)-1-hydroxy-2-[(N-{[2-methyl-2-(phenylsulfanyl)propoxy]carbonyl}-L-leucyl)amino]-3-[(3S)-2-oxopyrrolidin-3-yl]propane-1-sulfonic acid" XFR "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(1~{R},2~{S})-2-[[(2~{S})-4-methyl-2-[(2-methyl-2-phenylsulfanyl-propoxy)carbonylamino]pentanoyl]amino]-1-oxidanyl-3-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]propane-1-sulfonic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site XFR "Create component" 2022-11-14 RCSB XFR "Initial release" 2022-11-23 RCSB XFR "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id XFR _pdbx_chem_comp_pcm.modified_residue_id CYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C14 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #