data_XG9 # _chem_comp.id XG9 _chem_comp.name "4-[(2-tert-butyl-4-chloro-5-methylphenoxy)methyl]pyrimidine" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C16 H19 Cl N2 O" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-06-06 _chem_comp.pdbx_modified_date 2024-12-13 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 290.788 _chem_comp.one_letter_code ? _chem_comp.three_letter_code XG9 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7G6I _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal XG9 C10 C1 C 0 1 Y N N N N N -11.376 4.500 43.274 3.228 -0.511 -0.001 C10 XG9 1 XG9 C11 C2 C 0 1 Y N N N N N -12.097 4.030 44.391 2.399 -1.619 0.002 C11 XG9 2 XG9 C13 C3 C 0 1 Y N N N N N -12.715 6.324 44.759 0.481 -0.182 -0.004 C13 XG9 3 XG9 C15 C4 C 0 1 N N N N N N -12.016 8.228 43.234 0.723 2.314 -0.002 C15 XG9 4 XG9 C16 C5 C 0 1 N N N N N N -11.053 8.524 42.072 1.849 3.349 0.008 C16 XG9 5 XG9 C17 C6 C 0 1 N N N N N N -13.420 8.588 42.697 -0.152 2.500 1.240 C17 XG9 6 XG9 C18 C7 C 0 1 N N N N N N -12.146 2.604 44.825 2.994 -3.004 0.007 C18 XG9 7 XG9 C20 C8 C 0 1 N N N N N N -11.601 9.100 44.427 -0.130 2.500 -1.258 C20 XG9 8 XG9 C1 C9 C 0 1 Y N N N N N -12.789 8.888 48.024 -3.508 0.499 0.008 C1 XG9 9 XG9 C2 C10 C 0 1 Y N N N N N -13.915 8.171 47.623 -3.124 -0.833 -0.003 C2 XG9 10 XG9 N3 N1 N 0 1 Y N N N N N -15.233 8.538 47.968 -4.057 -1.771 -0.009 N3 XG9 11 XG9 C4 C11 C 0 1 Y N N N N N -15.299 9.676 48.728 -5.335 -1.453 -0.005 C4 XG9 12 XG9 N5 N2 N 0 1 Y N N N N N -14.233 10.431 49.161 -5.738 -0.198 0.006 N5 XG9 13 XG9 C6 C12 C 0 1 Y N N N N N -12.997 10.014 48.801 -4.862 0.795 0.013 C6 XG9 14 XG9 C7 C13 C 0 1 N N N N N N -13.816 6.903 46.783 -1.664 -1.207 -0.008 C7 XG9 15 XG9 O8 O1 O 0 1 N N N N N N -13.366 7.291 45.463 -0.868 -0.020 -0.000 O8 XG9 16 XG9 C9 C14 C 0 1 Y N N N N N -11.328 5.824 42.895 2.685 0.761 -0.001 C9 XG9 17 XG9 C12 C15 C 0 1 Y N N N N N -12.764 4.981 45.136 1.028 -1.457 0.001 C12 XG9 18 XG9 C14 C16 C 0 1 Y N N N N N -12.016 6.789 43.637 1.314 0.928 0.004 C14 XG9 19 XG9 CL19 CL1 CL 0 0 N N N N N N -10.490 3.405 42.285 4.952 -0.718 0.002 CL19 XG9 20 XG9 H28 H1 H 0 1 N N N N N N -11.097 9.594 41.822 2.457 3.217 0.904 H28 XG9 21 XG9 H30 H2 H 0 1 N N N N N N -10.028 8.259 42.369 2.472 3.217 -0.876 H30 XG9 22 XG9 H29 H3 H 0 1 N N N N N N -11.345 7.930 41.193 1.422 4.352 0.005 H29 XG9 23 XG9 H31 H4 H 0 1 N N N N N N -13.438 9.646 42.395 -0.580 3.503 1.236 H31 XG9 24 XG9 H32 H5 H 0 1 N N N N N N -13.654 7.955 41.828 -0.955 1.763 1.233 H32 XG9 25 XG9 H33 H6 H 0 1 N N N N N N -14.168 8.419 43.485 0.455 2.368 2.135 H33 XG9 26 XG9 H34 H7 H 0 1 N N N N N N -11.316 2.403 45.519 3.136 -3.334 1.036 H34 XG9 27 XG9 H35 H8 H 0 1 N N N N N N -13.103 2.408 45.331 2.319 -3.691 -0.505 H35 XG9 28 XG9 H36 H9 H 0 1 N N N N N N -12.055 1.950 43.945 3.955 -2.989 -0.506 H36 XG9 29 XG9 H38 H10 H 0 1 N N N N N N -11.602 10.158 44.126 0.493 2.368 -2.143 H38 XG9 30 XG9 H39 H11 H 0 1 N N N N N N -12.312 8.953 45.253 -0.933 1.763 -1.266 H39 XG9 31 XG9 H37 H12 H 0 1 N N N N N N -10.591 8.814 44.757 -0.557 3.503 -1.262 H37 XG9 32 XG9 H21 H13 H 0 1 N N N N N N -11.794 8.577 47.740 -2.770 1.287 0.018 H21 XG9 33 XG9 H22 H14 H 0 1 N N N N N N -16.284 10.014 49.015 -6.074 -2.241 -0.011 H22 XG9 34 XG9 H23 H15 H 0 1 N N N N N N -12.140 10.582 49.133 -5.198 1.821 0.022 H23 XG9 35 XG9 H25 H16 H 0 1 N N N N N N -13.095 6.207 47.236 -1.438 -1.802 0.877 H25 XG9 36 XG9 H24 H17 H 0 1 N N N N N N -14.801 6.418 46.717 -1.441 -1.787 -0.904 H24 XG9 37 XG9 H26 H18 H 0 1 N N N N N N -10.759 6.116 42.025 3.334 1.625 -0.003 H26 XG9 38 XG9 H27 H19 H 0 1 N N N N N N -13.324 4.686 46.011 0.381 -2.322 0.003 H27 XG9 39 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal XG9 C1 C2 DOUB Y N 1 XG9 C1 C6 SING Y N 2 XG9 C2 N3 SING Y N 3 XG9 C2 C7 SING N N 4 XG9 N3 C4 DOUB Y N 5 XG9 C4 N5 SING Y N 6 XG9 N5 C6 DOUB Y N 7 XG9 C7 O8 SING N N 8 XG9 O8 C13 SING N N 9 XG9 C9 C10 DOUB Y N 10 XG9 C9 C14 SING Y N 11 XG9 C10 C11 SING Y N 12 XG9 C10 CL19 SING N N 13 XG9 C11 C12 DOUB Y N 14 XG9 C11 C18 SING N N 15 XG9 C12 C13 SING Y N 16 XG9 C13 C14 DOUB Y N 17 XG9 C14 C15 SING N N 18 XG9 C15 C16 SING N N 19 XG9 C15 C17 SING N N 20 XG9 C15 C20 SING N N 21 XG9 C16 H28 SING N N 22 XG9 C16 H30 SING N N 23 XG9 C16 H29 SING N N 24 XG9 C17 H31 SING N N 25 XG9 C17 H32 SING N N 26 XG9 C17 H33 SING N N 27 XG9 C18 H34 SING N N 28 XG9 C18 H35 SING N N 29 XG9 C18 H36 SING N N 30 XG9 C20 H38 SING N N 31 XG9 C20 H39 SING N N 32 XG9 C20 H37 SING N N 33 XG9 C1 H21 SING N N 34 XG9 C4 H22 SING N N 35 XG9 C6 H23 SING N N 36 XG9 C7 H25 SING N N 37 XG9 C7 H24 SING N N 38 XG9 C9 H26 SING N N 39 XG9 C12 H27 SING N N 40 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor XG9 SMILES ACDLabs 12.01 "CC(C)(C)c1cc(Cl)c(C)cc1OCc1ccncn1" XG9 InChI InChI 1.06 "InChI=1S/C16H19ClN2O/c1-11-7-15(13(8-14(11)17)16(2,3)4)20-9-12-5-6-18-10-19-12/h5-8,10H,9H2,1-4H3" XG9 InChIKey InChI 1.06 PQGHKSKSASEMKX-UHFFFAOYSA-N XG9 SMILES_CANONICAL CACTVS 3.385 "Cc1cc(OCc2ccncn2)c(cc1Cl)C(C)(C)C" XG9 SMILES CACTVS 3.385 "Cc1cc(OCc2ccncn2)c(cc1Cl)C(C)(C)C" XG9 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1cc(c(cc1Cl)C(C)(C)C)OCc2ccncn2" XG9 SMILES "OpenEye OEToolkits" 2.0.7 "Cc1cc(c(cc1Cl)C(C)(C)C)OCc2ccncn2" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier XG9 "SYSTEMATIC NAME" ACDLabs 12.01 "4-[(2-tert-butyl-4-chloro-5-methylphenoxy)methyl]pyrimidine" XG9 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "4-[(2-~{tert}-butyl-4-chloranyl-5-methyl-phenoxy)methyl]pyrimidine" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site XG9 "Create component" 2023-06-06 RCSB XG9 "Initial release" 2024-12-18 RCSB #