data_XGN # _chem_comp.id XGN _chem_comp.name "5-[2-(4-fluoranyl-2,6-dimethyl-phenoxy)-5-(2-oxidanylpropan-2-yl)phenyl]-1-methyl-4-[(2-morpholin-4-yl-2-oxidanylidene-ethyl)amino]pyridin-2-one" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C29 H34 F N3 O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-11-02 _chem_comp.pdbx_modified_date 2024-01-19 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 523.596 _chem_comp.one_letter_code ? _chem_comp.three_letter_code XGN _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8WXY _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBC # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal XGN CBI C1 C 0 1 N N N N N N -17.976 13.508 -19.065 -5.556 0.865 -1.753 CBI XGN 1 XGN CBJ C2 C 0 1 N N N N N N -16.910 13.617 -20.108 -6.978 0.580 -1.258 CBJ XGN 2 XGN OBK O1 O 0 1 N N N N N N -17.227 14.822 -20.870 -7.498 -0.557 -1.951 OBK XGN 3 XGN CBL C3 C 0 1 N N N N N N -17.373 16.075 -20.092 -6.772 -1.766 -1.719 CBL XGN 4 XGN CBM C4 C 0 1 N N N N N N -18.615 15.979 -19.200 -5.339 -1.601 -2.238 CBM XGN 5 XGN NBF N1 N 0 1 N N N N N N -19.075 14.547 -19.203 -4.771 -0.375 -1.653 NBF XGN 6 XGN C C5 C 0 1 N N N N N N -20.369 14.127 -19.329 -3.568 -0.390 -1.045 C XGN 7 XGN O O2 O 0 1 N N N N N N -20.679 12.935 -19.329 -2.937 -1.423 -0.973 O XGN 8 XGN CA C6 C 0 1 N N N N N N -21.489 15.152 -19.447 -3.008 0.878 -0.453 CA XGN 9 XGN N N2 N 0 1 N N N N N N -22.566 14.580 -18.604 -1.700 0.600 0.145 N XGN 10 XGN CAV C7 C 0 1 N N N N N N -23.684 13.930 -19.008 -0.988 1.618 0.753 CAV XGN 11 XGN CAW C8 C 0 1 N N N N N N -23.766 13.208 -20.210 -1.502 2.901 0.808 CAW XGN 12 XGN CAX C9 C 0 1 N N N N N N -24.942 12.524 -20.580 -0.758 3.909 1.429 CAX XGN 13 XGN OBA O3 O 0 1 N N N N N N -25.036 11.865 -21.636 -1.203 5.045 1.484 OBA XGN 14 XGN NAY N3 N 0 1 N N N N N N -25.999 12.562 -19.752 0.443 3.635 1.968 NAY XGN 15 XGN CBC C10 C 0 1 N N N N N N -27.243 11.833 -20.126 1.203 4.708 2.614 CBC XGN 16 XGN CAZ C11 C 0 1 N N N N N N -25.941 13.257 -18.545 0.966 2.382 1.925 CAZ XGN 17 XGN CAU C12 C 0 1 N N N N N N -24.799 13.955 -18.145 0.281 1.363 1.337 CAU XGN 18 XGN CAA C13 C 0 1 Y N N N N N -24.918 14.646 -16.919 0.859 -0.003 1.302 CAA XGN 19 XGN CAF C14 C 0 1 Y N N N N N -25.990 15.533 -16.784 0.364 -0.993 2.147 CAF XGN 20 XGN CAE C15 C 0 1 Y N N N N N -26.270 16.252 -15.610 0.906 -2.263 2.110 CAE XGN 21 XGN CAH C16 C 0 1 N N N N N N -27.408 17.116 -15.588 0.369 -3.335 3.024 CAH XGN 22 XGN CAI C17 C 0 1 N N N N N N -26.888 18.523 -15.837 -0.771 -4.077 2.325 CAI XGN 23 XGN CAJ C18 C 0 1 N N N N N N -28.108 17.104 -14.206 1.488 -4.322 3.364 CAJ XGN 24 XGN OAK O4 O 0 1 N N N N N N -28.411 16.749 -16.647 -0.119 -2.735 4.226 OAK XGN 25 XGN CAD C19 C 0 1 Y N N N N N -25.392 16.088 -14.514 1.939 -2.555 1.237 CAD XGN 26 XGN CAC C20 C 0 1 Y N N N N N -24.307 15.204 -14.630 2.438 -1.579 0.395 CAC XGN 27 XGN CAB C21 C 0 1 Y N N N N N -24.083 14.482 -15.825 1.900 -0.303 0.417 CAB XGN 28 XGN OAG O5 O 0 1 N N N N N N -23.071 13.610 -16.067 2.385 0.656 -0.414 OAG XGN 29 XGN CAL C22 C 0 1 Y N N N N N -22.194 13.253 -15.089 3.396 0.317 -1.257 CAL XGN 30 XGN CAM C23 C 0 1 Y N N N N N -22.400 12.029 -14.443 4.715 0.457 -0.850 CAM XGN 31 XGN CAR C24 C 0 1 N N N N N N -23.465 11.169 -14.738 5.028 0.985 0.526 CAR XGN 32 XGN CAN C25 C 0 1 Y N N N N N -21.486 11.654 -13.464 5.742 0.112 -1.708 CAN XGN 33 XGN CAO C26 C 0 1 Y N N N N N -20.409 12.482 -13.141 5.456 -0.373 -2.973 CAO XGN 34 XGN FAT F1 F 0 1 N N N N N N -19.561 12.086 -12.200 6.461 -0.710 -3.810 FAT XGN 35 XGN CAP C27 C 0 1 Y N N N N N -20.215 13.700 -13.788 4.140 -0.513 -3.380 CAP XGN 36 XGN CAQ C28 C 0 1 Y N N N N N -21.105 14.101 -14.783 3.111 -0.174 -2.523 CAQ XGN 37 XGN CAS C29 C 0 1 N N N N N N -20.872 15.329 -15.435 1.679 -0.332 -2.964 CAS XGN 38 XGN H1 H1 H 0 1 N N N N N N -18.431 12.509 -19.137 -5.588 1.196 -2.791 H1 XGN 39 XGN H2 H2 H 0 1 N N N N N N -17.508 13.627 -18.077 -5.100 1.639 -1.135 H2 XGN 40 XGN H3 H3 H 0 1 N N N N N N -16.923 12.734 -20.764 -6.956 0.376 -0.187 H3 XGN 41 XGN H4 H4 H 0 1 N N N N N N -15.920 13.710 -19.637 -7.611 1.446 -1.451 H4 XGN 42 XGN H5 H5 H 0 1 N N N N N N -16.482 16.224 -19.465 -6.750 -1.979 -0.650 H5 XGN 43 XGN H6 H6 H 0 1 N N N N N N -17.482 16.925 -20.782 -7.257 -2.589 -2.245 H6 XGN 44 XGN H7 H7 H 0 1 N N N N N N -18.364 16.289 -18.175 -4.740 -2.462 -1.941 H7 XGN 45 XGN H8 H8 H 0 1 N N N N N N -19.410 16.628 -19.595 -5.350 -1.519 -3.325 H8 XGN 46 XGN H9 H9 H 0 1 N N N N N N -21.168 16.132 -19.065 -2.897 1.627 -1.238 H9 XGN 47 XGN H10 H10 H 0 1 N N N N N N -21.819 15.256 -20.491 -3.686 1.252 0.313 H10 XGN 48 XGN H11 H11 H 0 1 N N N N N N -22.099 13.932 -18.002 -1.333 -0.297 0.115 H11 XGN 49 XGN H12 H12 H 0 1 N N N N N N -22.909 13.176 -20.866 -2.467 3.122 0.375 H12 XGN 50 XGN H13 H13 H 0 1 N N N N N N -28.000 11.971 -19.340 0.637 5.639 2.557 H13 XGN 51 XGN H14 H14 H 0 1 N N N N N N -27.627 12.228 -21.078 1.376 4.452 3.660 H14 XGN 52 XGN H15 H15 H 0 1 N N N N N N -27.021 10.761 -20.237 2.159 4.833 2.107 H15 XGN 53 XGN H16 H16 H 0 1 N N N N N N -26.806 13.256 -17.899 1.933 2.191 2.366 H16 XGN 54 XGN H17 H17 H 0 1 N N N N N N -26.642 15.674 -17.633 -0.442 -0.769 2.829 H17 XGN 55 XGN H18 H18 H 0 1 N N N N N N -26.155 18.786 -15.060 -0.399 -4.534 1.408 H18 XGN 56 XGN H19 H19 H 0 1 N N N N N N -26.406 18.566 -16.825 -1.159 -4.852 2.986 H19 XGN 57 XGN H20 H20 H 0 1 N N N N N N -27.726 19.234 -15.806 -1.568 -3.374 2.082 H20 XGN 58 XGN H21 H21 H 0 1 N N N N N N -27.382 17.371 -13.424 2.300 -3.793 3.862 H21 XGN 59 XGN H22 H22 H 0 1 N N N N N N -28.932 17.833 -14.206 1.100 -5.097 4.025 H22 XGN 60 XGN H23 H23 H 0 1 N N N N N N -28.508 16.099 -14.006 1.860 -4.779 2.447 H23 XGN 61 XGN H24 H24 H 0 1 N N N N N N -28.733 15.870 -16.488 -0.831 -2.097 4.085 H24 XGN 62 XGN H25 H25 H 0 1 N N N N N N -25.554 16.636 -13.598 2.357 -3.551 1.214 H25 XGN 63 XGN H26 H26 H 0 1 N N N N N N -23.634 15.074 -13.795 3.244 -1.813 -0.284 H26 XGN 64 XGN H27 H27 H 0 1 N N N N N N -23.164 10.471 -15.533 5.091 0.153 1.228 H27 XGN 65 XGN H28 H28 H 0 1 N N N N N N -23.738 10.601 -13.836 5.980 1.515 0.505 H28 XGN 66 XGN H29 H29 H 0 1 N N N N N N -24.330 11.759 -15.076 4.239 1.668 0.841 H29 XGN 67 XGN H30 H30 H 0 1 N N N N N N -21.610 10.713 -12.949 6.769 0.221 -1.391 H30 XGN 68 XGN H31 H31 H 0 1 N N N N N N -19.380 14.330 -13.520 3.918 -0.891 -4.367 H31 XGN 69 XGN H32 H32 H 0 1 N N N N N N -21.388 16.136 -14.894 1.342 0.587 -3.444 H32 XGN 70 XGN H33 H33 H 0 1 N N N N N N -19.791 15.534 -15.455 1.605 -1.159 -3.671 H33 XGN 71 XGN H34 H34 H 0 1 N N N N N N -21.254 15.275 -16.465 1.052 -0.539 -2.097 H34 XGN 72 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal XGN OBA CAX DOUB N N 1 XGN OBK CBJ SING N N 2 XGN OBK CBL SING N N 3 XGN CAX CAW SING N N 4 XGN CAX NAY SING N N 5 XGN CAW CAV DOUB N N 6 XGN CBC NAY SING N N 7 XGN CBJ CBI SING N N 8 XGN CBL CBM SING N N 9 XGN NAY CAZ SING N N 10 XGN CA C SING N N 11 XGN CA N SING N N 12 XGN C O DOUB N N 13 XGN C NBF SING N N 14 XGN NBF CBM SING N N 15 XGN NBF CBI SING N N 16 XGN CAV N SING N N 17 XGN CAV CAU SING N N 18 XGN CAZ CAU DOUB N N 19 XGN CAU CAA SING N N 20 XGN CAA CAF DOUB Y N 21 XGN CAA CAB SING Y N 22 XGN CAF CAE SING Y N 23 XGN OAK CAH SING N N 24 XGN OAG CAB SING N N 25 XGN OAG CAL SING N N 26 XGN CAI CAH SING N N 27 XGN CAB CAC DOUB Y N 28 XGN CAE CAH SING N N 29 XGN CAE CAD DOUB Y N 30 XGN CAH CAJ SING N N 31 XGN CAS CAQ SING N N 32 XGN CAL CAQ DOUB Y N 33 XGN CAL CAM SING Y N 34 XGN CAQ CAP SING Y N 35 XGN CAR CAM SING N N 36 XGN CAC CAD SING Y N 37 XGN CAM CAN DOUB Y N 38 XGN CAP CAO DOUB Y N 39 XGN CAN CAO SING Y N 40 XGN CAO FAT SING N N 41 XGN CBI H1 SING N N 42 XGN CBI H2 SING N N 43 XGN CBJ H3 SING N N 44 XGN CBJ H4 SING N N 45 XGN CBL H5 SING N N 46 XGN CBL H6 SING N N 47 XGN CBM H7 SING N N 48 XGN CBM H8 SING N N 49 XGN CA H9 SING N N 50 XGN CA H10 SING N N 51 XGN N H11 SING N N 52 XGN CAW H12 SING N N 53 XGN CBC H13 SING N N 54 XGN CBC H14 SING N N 55 XGN CBC H15 SING N N 56 XGN CAZ H16 SING N N 57 XGN CAF H17 SING N N 58 XGN CAI H18 SING N N 59 XGN CAI H19 SING N N 60 XGN CAI H20 SING N N 61 XGN CAJ H21 SING N N 62 XGN CAJ H22 SING N N 63 XGN CAJ H23 SING N N 64 XGN OAK H24 SING N N 65 XGN CAD H25 SING N N 66 XGN CAC H26 SING N N 67 XGN CAR H27 SING N N 68 XGN CAR H28 SING N N 69 XGN CAR H29 SING N N 70 XGN CAN H30 SING N N 71 XGN CAP H31 SING N N 72 XGN CAS H32 SING N N 73 XGN CAS H33 SING N N 74 XGN CAS H34 SING N N 75 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor XGN InChI InChI 1.06 "InChI=1S/C29H34FN3O5/c1-18-12-21(30)13-19(2)28(18)38-25-7-6-20(29(3,4)36)14-22(25)23-17-32(5)26(34)15-24(23)31-16-27(35)33-8-10-37-11-9-33/h6-7,12-15,17,31,36H,8-11,16H2,1-5H3" XGN InChIKey InChI 1.06 LOOFPBVYOVHBCL-UHFFFAOYSA-N XGN SMILES_CANONICAL CACTVS 3.385 "CN1C=C(C(=CC1=O)NCC(=O)N2CCOCC2)c3cc(ccc3Oc4c(C)cc(F)cc4C)C(C)(C)O" XGN SMILES CACTVS 3.385 "CN1C=C(C(=CC1=O)NCC(=O)N2CCOCC2)c3cc(ccc3Oc4c(C)cc(F)cc4C)C(C)(C)O" XGN SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1cc(cc(c1Oc2ccc(cc2C3=CN(C(=O)C=C3NCC(=O)N4CCOCC4)C)C(C)(C)O)C)F" XGN SMILES "OpenEye OEToolkits" 2.0.7 "Cc1cc(cc(c1Oc2ccc(cc2C3=CN(C(=O)C=C3NCC(=O)N4CCOCC4)C)C(C)(C)O)C)F" # _pdbx_chem_comp_identifier.comp_id XGN _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "5-[2-(4-fluoranyl-2,6-dimethyl-phenoxy)-5-(2-oxidanylpropan-2-yl)phenyl]-1-methyl-4-[(2-morpholin-4-yl-2-oxidanylidene-ethyl)amino]pyridin-2-one" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site XGN "Create component" 2023-11-02 PDBC XGN "Initial release" 2024-01-24 RCSB #