data_XGO # _chem_comp.id XGO _chem_comp.name "[(3aR,3bR,6aS,6bS)-5-(1H-benzotriazole-5-carbonyl)octahydrocyclobuta[1,2-c:3,4-c']dipyrrol-2(1H)-yl][5-cyclopropyl-6-(cyclopropylmethoxy)pyridin-2-yl]methanone" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C28 H30 N6 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-06-06 _chem_comp.pdbx_modified_date 2024-12-13 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 498.576 _chem_comp.one_letter_code ? _chem_comp.three_letter_code XGO _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7G36 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal XGO C10 C1 C 0 1 N N N N N N -10.242 12.864 50.619 2.525 -0.558 -0.025 C10 XGO 1 XGO C15 C2 C 0 1 N N N N N N -10.668 13.491 53.103 4.403 -1.811 1.052 C15 XGO 2 XGO C16 C3 C 0 1 Y N N N N N -9.238 13.207 53.523 5.356 -0.726 0.740 C16 XGO 3 XGO C18 C4 C 0 1 Y N N N N N -8.952 11.910 53.969 6.503 -0.557 1.528 C18 XGO 4 XGO C19 C5 C 0 1 Y N N N N N -7.687 11.524 54.370 7.390 0.441 1.252 C19 XGO 5 XGO C20 C6 C 0 1 Y N N N N N -8.227 14.219 53.458 5.114 0.119 -0.336 C20 XGO 6 XGO C21 C7 C 0 1 Y N N N N N -6.901 13.807 53.900 6.020 1.143 -0.625 C21 XGO 7 XGO C22 C8 C 0 1 Y N N N N N -6.646 12.461 54.360 7.163 1.302 0.181 C22 XGO 8 XGO C26 C9 C 0 1 N N N N N N -13.627 9.360 47.649 -3.151 -2.434 -0.876 C26 XGO 9 XGO C27 C10 C 0 1 Y N N N N N -12.844 8.993 46.395 -4.165 -1.429 -0.482 C27 XGO 10 XGO N1 N1 N 0 1 N N N N N N -13.026 9.676 48.837 -1.862 -2.069 -1.021 N1 XGO 11 XGO C2 C11 C 0 1 N N N N N N -13.862 10.046 50.021 -0.765 -2.965 -1.406 C2 XGO 12 XGO C3 C12 C 0 1 N N S N N N -12.900 10.960 50.803 0.544 -2.261 -1.007 C3 XGO 13 XGO C4 C13 C 0 1 N N R N N N -11.429 10.611 50.308 0.183 -0.756 -1.061 C4 XGO 14 XGO C5 C14 C 0 1 N N N N N N -11.573 9.666 49.121 -1.335 -0.716 -0.820 C5 XGO 15 XGO C6 C15 C 0 1 N N S N N N -12.676 12.414 50.274 0.717 -2.088 0.508 C6 XGO 16 XGO C7 C16 C 0 1 N N R N N N -11.246 12.047 49.780 1.006 -0.593 0.228 C7 XGO 17 XGO C8 C17 C 0 1 N N N N N N -12.475 13.531 51.304 2.045 -2.643 1.050 C8 XGO 18 XGO N9 N2 N 0 1 N N N N N N -11.072 13.301 51.754 3.103 -1.682 0.721 N9 XGO 19 XGO O17 O1 O 0 1 N N N N N N -11.524 13.862 53.944 4.792 -2.820 1.607 O17 XGO 20 XGO N23 N3 N 0 1 Y N N N N N -5.274 12.379 54.697 7.849 2.372 -0.338 N23 XGO 21 XGO N24 N4 N 0 1 Y N N N N N -4.742 13.663 54.420 7.105 2.833 -1.434 N24 XGO 22 XGO N25 N5 N 0 1 Y N N N N N -5.661 14.484 53.977 6.058 2.101 -1.582 N25 XGO 23 XGO O28 O2 O 0 1 N N N N N N -14.864 9.431 47.624 -3.481 -3.588 -1.068 O28 XGO 24 XGO N29 N6 N 0 1 Y N N N N N -12.853 7.704 45.851 -3.797 -0.170 -0.273 N29 XGO 25 XGO C30 C18 C 0 1 Y N N N N N -12.094 7.567 44.726 -4.669 0.756 0.078 C30 XGO 26 XGO C31 C19 C 0 1 Y N N N N N -12.146 10.065 45.824 -5.496 -1.811 -0.339 C31 XGO 27 XGO C32 C20 C 0 1 Y N N N N N -11.385 9.850 44.671 -6.437 -0.861 0.030 C32 XGO 28 XGO C33 C21 C 0 1 Y N N N N N -11.358 8.572 44.113 -6.015 0.439 0.244 C33 XGO 29 XGO O34 O3 O 0 1 N N N N N N -11.951 6.407 44.077 -4.250 2.030 0.281 O34 XGO 30 XGO C35 C22 C 0 1 N N N N N N -12.125 5.205 44.796 -2.857 2.292 0.096 C35 XGO 31 XGO C36 C23 C 0 1 N N N N N N -11.839 4.126 43.750 -2.576 3.771 0.367 C36 XGO 32 XGO C37 C24 C 0 1 N N N N N N -10.491 4.071 43.030 -1.117 4.230 0.335 C37 XGO 33 XGO C38 C25 C 0 1 N N N N N N -10.806 3.061 44.115 -2.066 4.619 -0.800 C38 XGO 34 XGO C39 C26 C 0 1 N N N N N N -10.609 8.302 42.909 -7.003 1.504 0.646 C39 XGO 35 XGO C40 C27 C 0 1 N N N N N N -9.713 9.422 42.531 -7.769 1.299 1.955 C40 XGO 36 XGO C41 C28 C 0 1 N N N N N N -10.973 9.217 41.759 -8.488 1.137 0.615 C41 XGO 37 XGO H48 H1 H 0 1 N N N N N N -9.402 12.239 50.956 2.729 -0.673 -1.090 H48 XGO 38 XGO H49 H2 H 0 1 N N N N N N -9.855 13.724 50.053 2.942 0.382 0.335 H49 XGO 39 XGO H50 H3 H 0 1 N N N N N N -9.751 11.184 54.001 6.685 -1.221 2.360 H50 XGO 40 XGO H51 H4 H 0 1 N N N N N N -7.503 10.509 54.688 8.271 0.564 1.865 H51 XGO 41 XGO H52 H5 H 0 1 N N N N N N -8.433 15.219 53.106 4.233 -0.016 -0.945 H52 XGO 42 XGO H43 H6 H 0 1 N N N N N N -14.771 10.585 49.718 -0.854 -3.913 -0.877 H43 XGO 43 XGO H42 H7 H 0 1 N N N N N N -14.141 9.159 50.609 -0.783 -3.135 -2.483 H42 XGO 44 XGO H12 H8 H 0 1 N N N N N N -13.015 10.901 51.895 1.425 -2.572 -1.569 H12 XGO 45 XGO H11 H9 H 0 1 N N N N N N -10.733 10.296 51.099 0.525 -0.203 -1.935 H11 XGO 46 XGO H44 H10 H 0 1 N N N N N N -11.232 8.654 49.382 -1.803 -0.030 -1.526 H44 XGO 47 XGO H45 H11 H 0 1 N N N N N N -11.002 10.034 48.256 -1.538 -0.389 0.200 H45 XGO 48 XGO H14 H12 H 0 1 N N N N N N -13.360 12.686 49.457 -0.163 -2.306 1.113 H14 XGO 49 XGO H13 H13 H 0 1 N N N N N N -11.106 12.123 48.692 0.636 0.136 0.949 H13 XGO 50 XGO H47 H14 H 0 1 N N N N N N -12.588 14.523 50.843 1.980 -2.763 2.132 H47 XGO 51 XGO H46 H15 H 0 1 N N N N N N -13.183 13.433 52.141 2.261 -3.604 0.584 H46 XGO 52 XGO H53 H16 H 0 1 N N N N N N -4.784 11.584 55.055 8.686 2.737 -0.011 H53 XGO 53 XGO H54 H17 H 0 1 N N N N N N -12.195 11.047 46.270 -5.792 -2.835 -0.513 H54 XGO 54 XGO H55 H18 H 0 1 N N N N N N -10.828 10.659 44.221 -7.476 -1.131 0.148 H55 XGO 55 XGO H56 H19 H 0 1 N N N N N N -11.415 5.140 45.634 -2.277 1.679 0.786 H56 XGO 56 XGO H57 H20 H 0 1 N N N N N N -13.153 5.120 45.179 -2.576 2.050 -0.929 H57 XGO 57 XGO H58 H21 H 0 1 N N N N N N -12.707 3.776 43.172 -3.240 4.252 1.086 H58 XGO 58 XGO H60 H22 H 0 1 N N N N N N -10.442 3.751 41.979 -0.821 5.013 1.033 H60 XGO 59 XGO H59 H23 H 0 1 N N N N N N -9.740 4.854 43.210 -0.357 3.478 0.121 H59 XGO 60 XGO H61 H24 H 0 1 N N N N N N -10.283 3.112 45.081 -1.931 4.122 -1.762 H61 XGO 61 XGO H62 H25 H 0 1 N N N N N N -10.985 2.009 43.850 -2.394 5.657 -0.850 H62 XGO 62 XGO H63 H26 H 0 1 N N N N N N -10.300 7.272 42.677 -6.731 2.524 0.378 H63 XGO 63 XGO H64 H27 H 0 1 N N N N N N -9.615 10.292 43.197 -7.558 0.394 2.525 H64 XGO 64 XGO H65 H28 H 0 1 N N N N N N -8.742 9.210 42.059 -8.000 2.184 2.547 H65 XGO 65 XGO H67 H29 H 0 1 N N N N N N -10.933 8.846 40.724 -9.193 1.917 0.325 H67 XGO 66 XGO H66 H30 H 0 1 N N N N N N -11.806 9.929 41.861 -8.751 0.126 0.303 H66 XGO 67 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal XGO N1 C2 SING N N 1 XGO N1 C5 SING N N 2 XGO N1 C26 SING N N 3 XGO C2 C3 SING N N 4 XGO C3 C4 SING N N 5 XGO C3 C6 SING N N 6 XGO C4 C5 SING N N 7 XGO C4 C7 SING N N 8 XGO C6 C7 SING N N 9 XGO C6 C8 SING N N 10 XGO C7 C10 SING N N 11 XGO C8 N9 SING N N 12 XGO N9 C10 SING N N 13 XGO N9 C15 SING N N 14 XGO C15 C16 SING N N 15 XGO C15 O17 DOUB N N 16 XGO C16 C18 DOUB Y N 17 XGO C16 C20 SING Y N 18 XGO C18 C19 SING Y N 19 XGO C19 C22 DOUB Y N 20 XGO C20 C21 DOUB Y N 21 XGO C21 C22 SING Y N 22 XGO C21 N25 SING Y N 23 XGO C22 N23 SING Y N 24 XGO N23 N24 SING Y N 25 XGO N24 N25 DOUB Y N 26 XGO C26 C27 SING N N 27 XGO C26 O28 DOUB N N 28 XGO C27 N29 DOUB Y N 29 XGO C27 C31 SING Y N 30 XGO N29 C30 SING Y N 31 XGO C30 C33 DOUB Y N 32 XGO C30 O34 SING N N 33 XGO C31 C32 DOUB Y N 34 XGO C32 C33 SING Y N 35 XGO C33 C39 SING N N 36 XGO O34 C35 SING N N 37 XGO C35 C36 SING N N 38 XGO C36 C37 SING N N 39 XGO C36 C38 SING N N 40 XGO C37 C38 SING N N 41 XGO C39 C40 SING N N 42 XGO C39 C41 SING N N 43 XGO C40 C41 SING N N 44 XGO C10 H48 SING N N 45 XGO C10 H49 SING N N 46 XGO C18 H50 SING N N 47 XGO C19 H51 SING N N 48 XGO C20 H52 SING N N 49 XGO C2 H43 SING N N 50 XGO C2 H42 SING N N 51 XGO C3 H12 SING N N 52 XGO C4 H11 SING N N 53 XGO C5 H44 SING N N 54 XGO C5 H45 SING N N 55 XGO C6 H14 SING N N 56 XGO C7 H13 SING N N 57 XGO C8 H47 SING N N 58 XGO C8 H46 SING N N 59 XGO N23 H53 SING N N 60 XGO C31 H54 SING N N 61 XGO C32 H55 SING N N 62 XGO C35 H56 SING N N 63 XGO C35 H57 SING N N 64 XGO C36 H58 SING N N 65 XGO C37 H60 SING N N 66 XGO C37 H59 SING N N 67 XGO C38 H61 SING N N 68 XGO C38 H62 SING N N 69 XGO C39 H63 SING N N 70 XGO C40 H64 SING N N 71 XGO C40 H65 SING N N 72 XGO C41 H67 SING N N 73 XGO C41 H66 SING N N 74 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor XGO SMILES ACDLabs 12.01 "O=C(c1ccc(C2CC2)c(OCC2CC2)n1)N1CC2C3CN(CC3C2C1)C(=O)c1cc2nn[NH]c2cc1" XGO InChI InChI 1.06 "InChI=1S/C28H30N6O3/c35-27(17-5-7-23-25(9-17)31-32-30-23)33-10-19-20(11-33)22-13-34(12-21(19)22)28(36)24-8-6-18(16-3-4-16)26(29-24)37-14-15-1-2-15/h5-9,15-16,19-22H,1-4,10-14H2,(H,30,31,32)" XGO InChIKey InChI 1.06 DBRWJWIKNXFOGS-UHFFFAOYSA-N XGO SMILES_CANONICAL CACTVS 3.385 "O=C(N1C[C@@H]2[C@H](C1)[C@H]3CN(C[C@@H]23)C(=O)c4ccc(C5CC5)c(OCC6CC6)n4)c7ccc8[nH]nnc8c7" XGO SMILES CACTVS 3.385 "O=C(N1C[CH]2[CH](C1)[CH]3CN(C[CH]23)C(=O)c4ccc(C5CC5)c(OCC6CC6)n4)c7ccc8[nH]nnc8c7" XGO SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc2c(cc1C(=O)N3C[C@@H]4[C@H](C3)[C@@H]5[C@H]4CN(C5)C(=O)c6ccc(c(n6)OCC7CC7)C8CC8)nn[nH]2" XGO SMILES "OpenEye OEToolkits" 2.0.7 "c1cc2c(cc1C(=O)N3CC4C(C3)C5C4CN(C5)C(=O)c6ccc(c(n6)OCC7CC7)C8CC8)nn[nH]2" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier XGO "SYSTEMATIC NAME" ACDLabs 12.01 "[(3aR,3bR,6aS,6bS)-5-(1H-benzotriazole-5-carbonyl)octahydrocyclobuta[1,2-c:3,4-c']dipyrrol-2(1H)-yl][5-cyclopropyl-6-(cyclopropylmethoxy)pyridin-2-yl]methanone" XGO "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "1~{H}-benzotriazol-5-yl-[(1~{S},2~{R},6~{S},7~{R})-9-[5-cyclopropyl-6-(cyclopropylmethoxy)pyridin-2-yl]carbonyl-4,9-diazatricyclo[5.3.0.0^{2,6}]decan-4-yl]methanone" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site XGO "Create component" 2023-06-06 RCSB XGO "Initial release" 2024-12-18 RCSB #