data_XGY # _chem_comp.id XGY _chem_comp.name "(4S)-1-methylimidazolidin-4-amine" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C4 H11 N3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-12-16 _chem_comp.pdbx_modified_date 2021-06-18 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 101.150 _chem_comp.one_letter_code ? _chem_comp.three_letter_code XGY _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 5S7U _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal XGY C01 C1 C 0 1 N N N -17.341 22.311 -7.337 2.433 0.540 0.021 C01 XGY 1 XGY N02 N1 N 0 1 N N N -16.832 22.886 -8.328 1.091 0.145 -0.426 N02 XGY 2 XGY C03 C2 C 0 1 N N N -16.318 24.264 -8.059 0.745 -1.214 0.066 C03 XGY 3 XGY N04 N2 N 0 1 N N N -15.301 24.438 -9.166 -0.739 -1.243 0.014 N04 XGY 4 XGY C05 C3 C 0 1 N N S -14.769 23.329 -9.313 -1.152 0.112 0.451 C05 XGY 5 XGY N06 N3 N 0 1 N N N -14.151 23.168 -10.645 -2.324 0.557 -0.314 N06 XGY 6 XGY C07 C4 C 0 1 N N N -15.953 22.279 -8.990 0.054 1.026 0.161 C07 XGY 7 XGY H013 H1 H 0 0 N N N -17.688 21.310 -7.632 2.489 0.471 1.107 H013 XGY 8 XGY H011 H2 H 0 0 N N N -16.588 22.218 -6.540 3.175 -0.122 -0.425 H011 XGY 9 XGY H012 H3 H 0 0 N N N -18.193 22.901 -6.969 2.631 1.567 -0.288 H012 XGY 10 XGY H031 H5 H 0 0 N N N -17.121 25.012 -8.132 1.166 -1.977 -0.590 H031 XGY 11 XGY H032 H6 H 0 0 N N N -15.846 24.329 -7.068 1.097 -1.352 1.088 H032 XGY 12 XGY H041 H7 H 0 0 N N N -15.752 24.723 -10.012 -1.065 -1.436 -0.921 H041 XGY 13 XGY H051 H9 H 0 0 N N N -13.989 23.155 -8.557 -1.376 0.112 1.518 H051 XGY 14 XGY H3 H10 H 0 1 N N N -13.737 22.260 -10.713 -3.110 -0.057 -0.161 H3 XGY 15 XGY H061 H11 H 0 0 N N N -14.851 23.269 -11.352 -2.562 1.511 -0.089 H061 XGY 16 XGY H071 H13 H 0 0 N N N -16.385 21.901 -9.928 0.419 1.473 1.086 H071 XGY 17 XGY H072 H14 H 0 0 N N N -15.557 21.437 -8.403 -0.226 1.804 -0.550 H072 XGY 18 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal XGY N02 C01 SING N N 1 XGY C03 N02 SING N N 2 XGY N04 C03 SING N N 3 XGY C05 N04 SING N N 4 XGY N06 C05 SING N N 5 XGY C07 C05 SING N N 6 XGY N02 C07 SING N N 7 XGY C01 H013 SING N N 8 XGY C01 H011 SING N N 9 XGY C01 H012 SING N N 10 XGY C03 H031 SING N N 11 XGY C03 H032 SING N N 12 XGY N04 H041 SING N N 13 XGY C05 H051 SING N N 14 XGY N06 H3 SING N N 15 XGY N06 H061 SING N N 16 XGY C07 H071 SING N N 17 XGY C07 H072 SING N N 18 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor XGY SMILES ACDLabs 12.01 "CN1CC(NC1)N" XGY InChI InChI 1.03 "InChI=1S/C4H11N3/c1-7-2-4(5)6-3-7/h4,6H,2-3,5H2,1H3/t4-/m0/s1" XGY InChIKey InChI 1.03 VFALPSXHULBHMC-BYPYZUCNSA-N XGY SMILES_CANONICAL CACTVS 3.385 "CN1CN[C@H](N)C1" XGY SMILES CACTVS 3.385 "CN1CN[CH](N)C1" XGY SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CN1C[C@H](NC1)N" XGY SMILES "OpenEye OEToolkits" 2.0.7 "CN1CC(NC1)N" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier XGY "SYSTEMATIC NAME" ACDLabs 12.01 "(4S)-1-methylimidazolidin-4-amine" XGY "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(4~{S})-1-methylimidazolidin-4-amine" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site XGY "Create component" 2020-12-16 RCSB XGY "Initial release" 2021-06-23 RCSB ##