data_XGZ # _chem_comp.id XGZ _chem_comp.name Mycothiol _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C17 H30 N2 O12 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "(1S,2R,3R,4S,5S,6R)-2,3,4,5,6-pentahydroxycyclohexyl 2-[(N-acetyl-L-cysteinyl)amino]-2-deoxy-alpha-D-glucopyranoside " _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-11-16 _chem_comp.pdbx_modified_date 2023-03-31 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 486.491 _chem_comp.one_letter_code ? _chem_comp.three_letter_code XGZ _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8F5V _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal XGZ C02 C1 C 0 1 N N R -16.613 7.531 -2.253 3.253 -0.464 0.124 C02 XGZ 1 XGZ C03 C2 C 0 1 N N R -15.560 6.780 -3.084 4.176 -1.596 0.579 C03 XGZ 2 XGZ C05 C3 C 0 1 N N N -14.829 7.723 -4.042 3.984 -2.809 -0.334 C05 XGZ 3 XGZ C07 C4 C 0 1 N N S -15.798 8.511 -4.940 2.530 -3.277 -0.262 C07 XGZ 4 XGZ C09 C5 C 0 1 N N R -16.813 9.288 -4.074 1.606 -2.145 -0.717 C09 XGZ 5 XGZ C11 C6 C 0 1 N N N -17.574 8.320 -3.150 1.798 -0.932 0.196 C11 XGZ 6 XGZ C13 C7 C 0 1 N N R -19.752 9.207 -2.751 0.507 0.986 0.829 C13 XGZ 7 XGZ C15 C8 C 0 1 N N R -20.631 7.389 -1.337 2.216 2.575 0.274 C15 XGZ 8 XGZ C16 C9 C 0 1 N N N -21.492 6.151 -1.396 3.401 3.339 0.869 C16 XGZ 9 XGZ C18 C10 C 0 1 N N S -21.234 8.418 -0.367 1.184 3.570 -0.263 C18 XGZ 10 XGZ C20 C11 C 0 1 N N R -20.512 9.715 -0.465 -0.025 2.799 -0.802 C20 XGZ 11 XGZ C22 C12 C 0 1 N N R -20.421 10.225 -1.849 -0.594 1.917 0.314 C22 XGZ 12 XGZ C24 C13 C 0 1 N N N -20.121 12.584 -2.737 -2.660 0.664 0.624 C24 XGZ 13 XGZ C25 C14 C 0 1 N N R -19.493 13.967 -2.750 -3.803 -0.156 0.085 C25 XGZ 14 XGZ C27 C15 C 0 1 N N N -18.034 13.567 -4.888 -5.473 -1.626 1.080 C27 XGZ 15 XGZ C28 C16 C 0 1 N N N -17.739 14.089 -6.309 -6.394 -2.007 2.209 C28 XGZ 16 XGZ C30 C17 C 0 1 N N N -20.541 15.021 -2.261 -4.576 0.664 -0.950 C30 XGZ 17 XGZ N23 N1 N 0 1 N N N -19.684 11.528 -1.818 -1.705 1.120 -0.210 N23 XGZ 18 XGZ N26 N2 N 0 1 N N N -19.016 14.285 -4.100 -4.699 -0.527 1.183 N26 XGZ 19 XGZ O01 O1 O 0 1 N N N -15.963 8.459 -1.434 3.570 -0.102 -1.221 O01 XGZ 20 XGZ O04 O2 O 0 1 N N N -14.632 6.174 -2.213 5.535 -1.159 0.512 O04 XGZ 21 XGZ O06 O3 O 0 1 N N N -13.977 6.928 -4.836 4.847 -3.866 0.090 O06 XGZ 22 XGZ O08 O4 O 0 1 N N N -15.094 9.403 -5.776 2.351 -4.409 -1.115 O08 XGZ 23 XGZ O10 O5 O 0 1 N N N -17.749 9.918 -4.933 0.248 -2.582 -0.649 O10 XGZ 24 XGZ O12 O6 O 0 1 N N N -18.470 9.006 -2.257 0.935 0.125 -0.228 O12 XGZ 25 XGZ O14 O7 O 0 1 N N N -20.530 7.954 -2.678 1.614 1.765 1.286 O14 XGZ 26 XGZ O17 O8 O 0 1 N N N -20.881 5.192 -2.237 4.415 2.413 1.264 O17 XGZ 27 XGZ O19 O9 O 0 1 N N N -21.074 7.940 0.977 1.767 4.341 -1.315 O19 XGZ 28 XGZ O21 O10 O 0 1 N N N -21.219 10.702 0.359 -1.025 3.722 -1.238 O21 XGZ 29 XGZ O29 O11 O 0 1 N N N -17.453 12.610 -4.487 -5.427 -2.308 0.078 O29 XGZ 30 XGZ O32 O12 O 0 1 N N N -20.990 12.344 -3.483 -2.600 0.915 1.809 O32 XGZ 31 XGZ S31 S1 S 0 1 N N N -22.379 14.903 -2.544 -5.952 -0.324 -1.599 S31 XGZ 32 XGZ H1 H1 H 0 1 N N N -17.186 6.807 -1.656 3.389 0.400 0.775 H1 XGZ 33 XGZ H2 H2 H 0 1 N N N -16.074 6.011 -3.680 3.934 -1.872 1.605 H2 XGZ 34 XGZ H3 H3 H 0 1 N N N -14.240 8.439 -3.450 4.227 -2.532 -1.361 H3 XGZ 35 XGZ H4 H4 H 0 1 N N N -16.357 7.789 -5.554 2.287 -3.553 0.764 H4 XGZ 36 XGZ H5 H5 H 0 1 N N N -16.277 10.029 -3.463 1.849 -1.868 -1.743 H5 XGZ 37 XGZ H6 H6 H 0 1 N N N -18.137 7.610 -3.773 1.556 -1.209 1.223 H6 XGZ 38 XGZ H7 H7 H 0 1 N N N -19.733 9.583 -3.784 0.120 0.386 1.652 H7 XGZ 39 XGZ H8 H8 H 0 1 N N N -19.630 7.111 -0.976 2.565 1.939 -0.540 H8 XGZ 40 XGZ H9 H9 H 0 1 N N N -22.483 6.412 -1.797 3.804 4.022 0.122 H9 XGZ 41 XGZ H10 H10 H 0 1 N N N -21.604 5.734 -0.384 3.068 3.906 1.738 H10 XGZ 42 XGZ H11 H11 H 0 1 N N N -22.298 8.562 -0.605 0.865 4.233 0.541 H11 XGZ 43 XGZ H12 H12 H 0 1 N N N -19.495 9.582 -0.069 0.285 2.174 -1.640 H12 XGZ 44 XGZ H13 H13 H 0 1 N N N -21.438 10.407 -2.227 -0.950 2.546 1.130 H13 XGZ 45 XGZ H14 H14 H 0 1 N N N -18.644 13.977 -2.050 -3.412 -1.059 -0.386 H14 XGZ 46 XGZ H15 H15 H 0 1 N N N -16.976 13.453 -6.783 -6.935 -2.916 1.946 H15 XGZ 47 XGZ H16 H16 H 0 1 N N N -18.661 14.063 -6.908 -5.810 -2.180 3.113 H16 XGZ 48 XGZ H17 H17 H 0 1 N N N -17.369 15.123 -6.250 -7.106 -1.200 2.386 H17 XGZ 49 XGZ H18 H18 H 0 1 N N N -20.414 15.078 -1.170 -4.967 1.566 -0.480 H18 XGZ 50 XGZ H19 H19 H 0 1 N N N -20.234 15.974 -2.716 -3.909 0.939 -1.767 H19 XGZ 51 XGZ H20 H20 H 0 1 N N N -18.919 11.673 -1.191 -1.753 0.919 -1.158 H20 XGZ 52 XGZ H21 H21 H 0 1 N N N -19.417 15.095 -4.528 -4.736 0.019 1.984 H21 XGZ 53 XGZ H22 H22 H 0 1 N N N -15.356 8.006 -0.861 4.479 0.205 -1.342 H22 XGZ 54 XGZ H23 H23 H 0 1 N N N -15.089 5.589 -1.620 6.177 -1.827 0.786 H23 XGZ 55 XGZ H24 H24 H 0 1 N N N -13.381 6.444 -4.276 4.778 -4.668 -0.445 H24 XGZ 56 XGZ H25 H25 H 0 1 N N N -14.472 8.918 -6.305 2.906 -5.167 -0.885 H25 XGZ 57 XGZ H26 H26 H 0 1 N N N -17.695 10.860 -4.824 0.053 -3.349 -1.205 H26 XGZ 58 XGZ H27 H27 H 0 1 N N N -21.422 4.412 -2.275 5.198 2.828 1.650 H27 XGZ 59 XGZ H28 H28 H 0 1 N N N -21.444 8.570 1.584 2.542 4.852 -1.046 H28 XGZ 60 XGZ H29 H29 H 0 1 N N N -21.283 10.383 1.252 -0.730 4.318 -1.941 H29 XGZ 61 XGZ H30 H30 H 0 1 N N N -22.811 15.985 -1.967 -6.532 0.509 -2.482 H30 XGZ 62 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal XGZ C28 C27 SING N N 1 XGZ O08 C07 SING N N 2 XGZ C07 C09 SING N N 3 XGZ C07 C05 SING N N 4 XGZ O10 C09 SING N N 5 XGZ C27 O29 DOUB N N 6 XGZ C27 N26 SING N N 7 XGZ O06 C05 SING N N 8 XGZ N26 C25 SING N N 9 XGZ C09 C11 SING N N 10 XGZ C05 C03 SING N N 11 XGZ O32 C24 DOUB N N 12 XGZ C11 O12 SING N N 13 XGZ C11 C02 SING N N 14 XGZ C03 C02 SING N N 15 XGZ C03 O04 SING N N 16 XGZ C13 O14 SING N N 17 XGZ C13 O12 SING N N 18 XGZ C13 C22 SING N N 19 XGZ C25 C24 SING N N 20 XGZ C25 C30 SING N N 21 XGZ C24 N23 SING N N 22 XGZ O14 C15 SING N N 23 XGZ S31 C30 SING N N 24 XGZ C02 O01 SING N N 25 XGZ O17 C16 SING N N 26 XGZ C22 N23 SING N N 27 XGZ C22 C20 SING N N 28 XGZ C16 C15 SING N N 29 XGZ C15 C18 SING N N 30 XGZ C20 C18 SING N N 31 XGZ C20 O21 SING N N 32 XGZ C18 O19 SING N N 33 XGZ C02 H1 SING N N 34 XGZ C03 H2 SING N N 35 XGZ C05 H3 SING N N 36 XGZ C07 H4 SING N N 37 XGZ C09 H5 SING N N 38 XGZ C11 H6 SING N N 39 XGZ C13 H7 SING N N 40 XGZ C15 H8 SING N N 41 XGZ C16 H9 SING N N 42 XGZ C16 H10 SING N N 43 XGZ C18 H11 SING N N 44 XGZ C20 H12 SING N N 45 XGZ C22 H13 SING N N 46 XGZ C25 H14 SING N N 47 XGZ C28 H15 SING N N 48 XGZ C28 H16 SING N N 49 XGZ C28 H17 SING N N 50 XGZ C30 H18 SING N N 51 XGZ C30 H19 SING N N 52 XGZ N23 H20 SING N N 53 XGZ N26 H21 SING N N 54 XGZ O01 H22 SING N N 55 XGZ O04 H23 SING N N 56 XGZ O06 H24 SING N N 57 XGZ O08 H25 SING N N 58 XGZ O10 H26 SING N N 59 XGZ O17 H27 SING N N 60 XGZ O19 H28 SING N N 61 XGZ O21 H29 SING N N 62 XGZ S31 H30 SING N N 63 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor XGZ SMILES ACDLabs 12.01 "CC(=O)NC(CS)C(=O)NC1C(O)C(O)C(CO)OC1OC1C(O)C(O)C(O)C(O)C1O" XGZ InChI InChI 1.06 "InChI=1S/C17H30N2O12S/c1-4(21)18-5(3-32)16(29)19-7-9(23)8(22)6(2-20)30-17(7)31-15-13(27)11(25)10(24)12(26)14(15)28/h5-15,17,20,22-28,32H,2-3H2,1H3,(H,18,21)(H,19,29)/t5-,6+,7+,8+,9+,10-,11-,12+,13+,14+,15-,17+/m0/s1" XGZ InChIKey InChI 1.06 MQBCDKMPXVYCGO-FQBKTPCVSA-N XGZ SMILES_CANONICAL CACTVS 3.385 "CC(=O)N[C@@H](CS)C(=O)N[C@@H]1[C@@H](O)[C@H](O)[C@@H](CO)O[C@@H]1O[C@@H]2[C@H](O)[C@H](O)[C@@H](O)[C@H](O)[C@H]2O" XGZ SMILES CACTVS 3.385 "CC(=O)N[CH](CS)C(=O)N[CH]1[CH](O)[CH](O)[CH](CO)O[CH]1O[CH]2[CH](O)[CH](O)[CH](O)[CH](O)[CH]2O" XGZ SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(=O)N[C@@H](CS)C(=O)N[C@@H]1[C@H]([C@@H]([C@H](O[C@@H]1OC2[C@@H]([C@H](C([C@H]([C@H]2O)O)O)O)O)CO)O)O" XGZ SMILES "OpenEye OEToolkits" 2.0.7 "CC(=O)NC(CS)C(=O)NC1C(C(C(OC1OC2C(C(C(C(C2O)O)O)O)O)CO)O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier XGZ "SYSTEMATIC NAME" ACDLabs 12.01 "(1S,2R,3R,4S,5S,6R)-2,3,4,5,6-pentahydroxycyclohexyl 2-[(N-acetyl-L-cysteinyl)amino]-2-deoxy-alpha-D-glucopyranoside" XGZ "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{R})-2-acetamido-~{N}-[(2~{R},3~{R},4~{R},5~{S},6~{R})-6-(hydroxymethyl)-4,5-bis(oxidanyl)-2-[(2~{R},3~{R},5~{S},6~{R})-2,3,4,5,6-pentakis(oxidanyl)cyclohexyl]oxy-oxan-3-yl]-3-sulfanyl-propanamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site XGZ "Create component" 2022-11-16 RCSB XGZ "Initial release" 2023-04-05 RCSB # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id XGZ _pdbx_chem_comp_synonyms.name "(1S,2R,3R,4S,5S,6R)-2,3,4,5,6-pentahydroxycyclohexyl 2-[(N-acetyl-L-cysteinyl)amino]-2-deoxy-alpha-D-glucopyranoside " _pdbx_chem_comp_synonyms.provenance PDB _pdbx_chem_comp_synonyms.type ? #