data_XH5
# 
_chem_comp.id                                    XH5 
_chem_comp.name                                  "(5S)-5-methyl-1,3-diazinane-2,4-dione" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C5 H8 N2 O2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-11-16 
_chem_comp.pdbx_modified_date                    2023-01-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        128.129 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     XH5 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8F61 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
XH5 C02 C1 C 0 1 N N N -8.239  -25.590 -45.976 -1.541 0.058  0.013  C02 XH5 1  
XH5 C05 C2 C 0 1 N N N -9.732  -26.624 -44.168 0.664  0.837  -0.064 C05 XH5 2  
XH5 C07 C3 C 0 1 N N S -10.428 -25.287 -44.000 1.154  -0.542 -0.427 C07 XH5 3  
XH5 C08 C4 C 0 1 N N N -10.205 -24.846 -42.461 2.591  -0.721 0.068  C08 XH5 4  
XH5 C09 C5 C 0 1 N N N -10.004 -24.111 -44.854 0.252  -1.587 0.234  C09 XH5 5  
XH5 N01 N1 N 0 1 N N N -8.931  -24.265 -45.814 -1.151 -1.227 0.019  N01 XH5 6  
XH5 N04 N2 N 0 1 N N N -8.658  -26.767 -45.135 -0.653 1.063  0.090  N04 XH5 7  
XH5 O03 O1 O 0 1 N N N -7.366  -25.702 -46.768 -2.726 0.318  -0.069 O03 XH5 8  
XH5 O06 O2 O 0 1 N N N -10.070 -27.542 -43.498 1.457  1.742  0.088  O06 XH5 9  
XH5 H1  H1 H 0 1 N N N -11.508 -25.442 -44.138 1.124  -0.667 -1.510 H1  XH5 10 
XH5 H2  H2 H 0 1 N N N -10.500 -25.671 -41.796 2.620  -0.599 1.151  H2  XH5 11 
XH5 H3  H3 H 0 1 N N N -9.144  -24.606 -42.299 2.944  -1.718 -0.195 H3  XH5 12 
XH5 H4  H4 H 0 1 N N N -10.819 -23.960 -42.241 3.232  0.026  -0.400 H4  XH5 13 
XH5 H5  H5 H 0 1 N N N -9.701  -23.310 -44.164 0.447  -2.566 -0.204 H5  XH5 14 
XH5 H6  H6 H 0 1 N N N -8.196  -27.648 -45.243 -0.966 1.965  0.260  H6  XH5 15 
XH5 H7  H7 H 0 1 N N N -10.892 -23.792 -45.419 0.458  -1.620 1.304  H7  XH5 16 
XH5 H8  H8 H 0 1 N N N -8.648  -23.485 -46.373 -1.808 -1.927 -0.121 H8  XH5 17 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
XH5 O03 C02 DOUB N N 1  
XH5 C02 N01 SING N N 2  
XH5 C02 N04 SING N N 3  
XH5 N01 C09 SING N N 4  
XH5 N04 C05 SING N N 5  
XH5 C09 C07 SING N N 6  
XH5 C05 C07 SING N N 7  
XH5 C05 O06 DOUB N N 8  
XH5 C07 C08 SING N N 9  
XH5 C07 H1  SING N N 10 
XH5 C08 H2  SING N N 11 
XH5 C08 H3  SING N N 12 
XH5 C08 H4  SING N N 13 
XH5 C09 H5  SING N N 14 
XH5 N04 H6  SING N N 15 
XH5 C09 H7  SING N N 16 
XH5 N01 H8  SING N N 17 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
XH5 SMILES           ACDLabs              12.01 "O=C1NC(=O)C(C)CN1"                                                         
XH5 InChI            InChI                1.06  "InChI=1S/C5H8N2O2/c1-3-2-6-5(9)7-4(3)8/h3H,2H2,1H3,(H2,6,7,8,9)/t3-/m0/s1" 
XH5 InChIKey         InChI                1.06  NBAKTGXDIBVZOO-VKHMYHEASA-N                                                 
XH5 SMILES_CANONICAL CACTVS               3.385 "C[C@H]1CNC(=O)NC1=O"                                                       
XH5 SMILES           CACTVS               3.385 "C[CH]1CNC(=O)NC1=O"                                                        
XH5 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@H]1CNC(=O)NC1=O"                                                       
XH5 SMILES           "OpenEye OEToolkits" 2.0.7 "CC1CNC(=O)NC1=O"                                                           
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
XH5 "SYSTEMATIC NAME" ACDLabs              12.01 "(5S)-5-methyl-1,3-diazinane-2,4-dione"    
XH5 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(5~{S})-5-methyl-1,3-diazinane-2,4-dione" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
XH5 "Create component" 2022-11-16 RCSB 
XH5 "Initial release"  2023-02-01 RCSB 
#