data_XH5
#
_chem_comp.id XH5
_chem_comp.name "(5S)-5-methyl-1,3-diazinane-2,4-dione"
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C5 H8 N2 O2"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2022-11-16
_chem_comp.pdbx_modified_date 2023-01-27
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 128.129
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code XH5
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 8F61
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
XH5 C02 C1 C 0 1 N N N -8.239 -25.590 -45.976 -1.541 0.058 0.013 C02 XH5 1
XH5 C05 C2 C 0 1 N N N -9.732 -26.624 -44.168 0.664 0.837 -0.064 C05 XH5 2
XH5 C07 C3 C 0 1 N N S -10.428 -25.287 -44.000 1.154 -0.542 -0.427 C07 XH5 3
XH5 C08 C4 C 0 1 N N N -10.205 -24.846 -42.461 2.591 -0.721 0.068 C08 XH5 4
XH5 C09 C5 C 0 1 N N N -10.004 -24.111 -44.854 0.252 -1.587 0.234 C09 XH5 5
XH5 N01 N1 N 0 1 N N N -8.931 -24.265 -45.814 -1.151 -1.227 0.019 N01 XH5 6
XH5 N04 N2 N 0 1 N N N -8.658 -26.767 -45.135 -0.653 1.063 0.090 N04 XH5 7
XH5 O03 O1 O 0 1 N N N -7.366 -25.702 -46.768 -2.726 0.318 -0.069 O03 XH5 8
XH5 O06 O2 O 0 1 N N N -10.070 -27.542 -43.498 1.457 1.742 0.088 O06 XH5 9
XH5 H1 H1 H 0 1 N N N -11.508 -25.442 -44.138 1.124 -0.667 -1.510 H1 XH5 10
XH5 H2 H2 H 0 1 N N N -10.500 -25.671 -41.796 2.620 -0.599 1.151 H2 XH5 11
XH5 H3 H3 H 0 1 N N N -9.144 -24.606 -42.299 2.944 -1.718 -0.195 H3 XH5 12
XH5 H4 H4 H 0 1 N N N -10.819 -23.960 -42.241 3.232 0.026 -0.400 H4 XH5 13
XH5 H5 H5 H 0 1 N N N -9.701 -23.310 -44.164 0.447 -2.566 -0.204 H5 XH5 14
XH5 H6 H6 H 0 1 N N N -8.196 -27.648 -45.243 -0.966 1.965 0.260 H6 XH5 15
XH5 H7 H7 H 0 1 N N N -10.892 -23.792 -45.419 0.458 -1.620 1.304 H7 XH5 16
XH5 H8 H8 H 0 1 N N N -8.648 -23.485 -46.373 -1.808 -1.927 -0.121 H8 XH5 17
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
XH5 O03 C02 DOUB N N 1
XH5 C02 N01 SING N N 2
XH5 C02 N04 SING N N 3
XH5 N01 C09 SING N N 4
XH5 N04 C05 SING N N 5
XH5 C09 C07 SING N N 6
XH5 C05 C07 SING N N 7
XH5 C05 O06 DOUB N N 8
XH5 C07 C08 SING N N 9
XH5 C07 H1 SING N N 10
XH5 C08 H2 SING N N 11
XH5 C08 H3 SING N N 12
XH5 C08 H4 SING N N 13
XH5 C09 H5 SING N N 14
XH5 N04 H6 SING N N 15
XH5 C09 H7 SING N N 16
XH5 N01 H8 SING N N 17
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
XH5 SMILES ACDLabs 12.01 "O=C1NC(=O)C(C)CN1"
XH5 InChI InChI 1.06 "InChI=1S/C5H8N2O2/c1-3-2-6-5(9)7-4(3)8/h3H,2H2,1H3,(H2,6,7,8,9)/t3-/m0/s1"
XH5 InChIKey InChI 1.06 NBAKTGXDIBVZOO-VKHMYHEASA-N
XH5 SMILES_CANONICAL CACTVS 3.385 "C[C@H]1CNC(=O)NC1=O"
XH5 SMILES CACTVS 3.385 "C[CH]1CNC(=O)NC1=O"
XH5 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@H]1CNC(=O)NC1=O"
XH5 SMILES "OpenEye OEToolkits" 2.0.7 "CC1CNC(=O)NC1=O"
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
XH5 "SYSTEMATIC NAME" ACDLabs 12.01 "(5S)-5-methyl-1,3-diazinane-2,4-dione"
XH5 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(5~{S})-5-methyl-1,3-diazinane-2,4-dione"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
XH5 "Create component" 2022-11-16 RCSB
XH5 "Initial release" 2023-02-01 RCSB
#