data_XH9 # _chem_comp.id XH9 _chem_comp.name "2-[[4-(5-chloranylpyridin-3-yl)carbonyl-1,4-diazepan-1-yl]methyl]benzenecarbonitrile" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C19 H19 Cl N4 O" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-11-02 _chem_comp.pdbx_modified_date 2024-02-02 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 354.833 _chem_comp.one_letter_code ? _chem_comp.three_letter_code XH9 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8R12 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal XH9 C10 C1 C 0 1 N N N N N N -21.338 -3.999 -28.372 1.455 0.986 0.207 C10 XH9 1 XH9 N12 N1 N 0 1 N N N N N N -21.432 -4.958 -26.103 -0.815 0.353 0.877 N12 XH9 2 XH9 C13 C2 C 0 1 N N N N N N -20.452 -4.789 -25.027 -1.716 1.334 0.670 C13 XH9 3 XH9 C15 C3 C 0 1 Y N N N N N -18.385 -6.218 -25.254 -3.786 -0.063 0.561 C15 XH9 4 XH9 C20 C4 C 0 1 Y N N N N N -18.064 -3.844 -25.414 -3.549 1.785 -0.964 C20 XH9 5 XH9 C22 C5 C 0 1 Y N N N N N -22.137 -4.763 -31.669 4.574 1.555 -0.526 C22 XH9 6 XH9 C24 C6 C 0 1 Y N N N N N -21.355 -3.956 -33.811 6.455 0.794 0.756 C24 XH9 7 XH9 N01 N2 N 0 1 N N N N N N -22.391 0.177 -31.467 4.011 -3.207 -0.280 N01 XH9 8 XH9 C02 C7 C 0 1 N N N N N N -22.272 -0.933 -31.731 4.378 -2.136 -0.183 C02 XH9 9 XH9 C03 C8 C 0 1 Y N N N N N -22.095 -2.399 -32.135 4.840 -0.786 -0.060 C03 XH9 10 XH9 C04 C9 C 0 1 Y N N N N N -22.356 -3.445 -31.240 4.123 0.257 -0.649 C04 XH9 11 XH9 C05 C10 C 0 1 N N N N N N -22.876 -3.143 -29.802 2.859 -0.034 -1.416 C05 XH9 12 XH9 N06 N3 N 0 1 N N N N N N -22.601 -4.102 -28.976 1.746 -0.218 -0.475 N06 XH9 13 XH9 C07 C11 C 0 1 N N N N N N -23.716 -4.467 -28.234 0.618 -0.886 -1.123 C07 XH9 14 XH9 C08 C12 C 0 1 N N N N N N -23.754 -4.115 -26.751 -0.058 -1.797 -0.122 C08 XH9 15 XH9 C09 C13 C 0 1 N N N N N N -22.855 -4.909 -25.802 -1.201 -1.040 0.576 C09 XH9 16 XH9 C11 C14 C 0 1 N N N N N N -20.979 -5.196 -27.464 0.494 0.706 1.388 C11 XH9 17 XH9 C14 C15 C 0 1 Y N N N N N -18.920 -4.934 -25.283 -3.034 1.015 0.081 C14 XH9 18 XH9 C16 C16 C 0 1 Y N N N N N -17.004 -6.366 -25.392 -5.012 -0.322 -0.029 C16 XH9 19 XH9 CL17 CL1 CL 0 0 N N N N N N -16.320 -8.008 -25.386 -5.990 -1.645 0.525 CL17 XH9 20 XH9 C18 C17 C 0 1 Y N N N N N -16.203 -5.236 -25.533 -5.450 0.486 -1.065 C18 XH9 21 XH9 N19 N4 N 0 1 Y N N N N N -16.743 -4.031 -25.554 -4.718 1.496 -1.496 N19 XH9 22 XH9 O21 O1 O 0 1 N N N N N N -20.816 -4.600 -23.906 -1.445 2.481 0.968 O21 XH9 23 XH9 C23 C18 C 0 1 Y N N N N N -21.623 -5.006 -32.942 5.737 1.824 0.174 C23 XH9 24 XH9 C25 C19 C 0 1 Y N N N N N -21.604 -2.648 -33.418 6.015 -0.509 0.642 C25 XH9 25 XH9 H101 H1 H 0 0 N N N N N N -20.580 -3.926 -29.165 2.381 1.418 0.589 H101 XH9 26 XH9 H102 H2 H 0 0 N N N N N N -21.319 -3.084 -27.762 0.985 1.688 -0.481 H102 XH9 27 XH9 H151 H3 H 0 0 N N N N N N -19.023 -7.080 -25.128 -3.418 -0.679 1.368 H151 XH9 28 XH9 H201 H4 H 0 0 N N N N N N -18.466 -2.842 -25.403 -2.979 2.619 -1.345 H201 XH9 29 XH9 H221 H5 H 0 0 N N N N N N -22.367 -5.589 -31.013 4.021 2.363 -0.982 H221 XH9 30 XH9 H241 H6 H 0 0 N N N N N N -20.953 -4.157 -34.793 7.362 1.010 1.301 H241 XH9 31 XH9 H051 H7 H 0 0 N N N N N N -23.967 -3.009 -29.840 2.638 0.800 -2.082 H051 XH9 32 XH9 H052 H8 H 0 0 N N N N N N -22.405 -2.217 -29.441 2.992 -0.942 -2.004 H052 XH9 33 XH9 H072 H10 H 0 0 N N N N N N -23.812 -5.560 -28.310 -0.094 -0.139 -1.475 H072 XH9 34 XH9 H071 H11 H 0 0 N N N N N N -24.588 -3.988 -28.703 0.978 -1.473 -1.967 H071 XH9 35 XH9 H082 H12 H 0 0 N N N N N N -23.472 -3.056 -26.659 -0.463 -2.667 -0.640 H082 XH9 36 XH9 H081 H13 H 0 0 N N N N N N -24.791 -4.250 -26.409 0.669 -2.122 0.622 H081 XH9 37 XH9 H092 H14 H 0 0 N N N N N N -22.964 -4.468 -24.800 -1.451 -1.550 1.506 H092 XH9 38 XH9 H091 H15 H 0 0 N N N N N N -23.224 -5.945 -25.789 -2.076 -1.035 -0.074 H091 XH9 39 XH9 H111 H16 H 0 0 N N N N N N -21.464 -6.103 -27.853 0.884 -0.118 1.985 H111 XH9 40 XH9 H112 H17 H 0 0 N N N N N N -19.888 -5.335 -27.463 0.413 1.597 2.009 H112 XH9 41 XH9 H181 H18 H 0 0 N N N N N N -15.133 -5.346 -25.626 -6.405 0.287 -1.527 H181 XH9 42 XH9 H231 H19 H 0 0 N N N N N N -21.431 -6.021 -33.256 6.085 2.841 0.267 H231 XH9 43 XH9 H251 H20 H 0 0 N N N N N N -21.419 -1.830 -34.099 6.579 -1.312 1.092 H251 XH9 44 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal XH9 C02 N01 TRIP N N 1 XH9 C03 C02 SING N N 2 XH9 C04 C03 DOUB Y N 3 XH9 N06 C05 SING N N 4 XH9 C08 C07 SING N N 5 XH9 C09 C08 SING N N 6 XH9 C07 N06 SING N N 7 XH9 C10 N06 SING N N 8 XH9 C11 C10 SING N N 9 XH9 N12 C11 SING N N 10 XH9 C13 N12 SING N N 11 XH9 C15 C14 DOUB Y N 12 XH9 C16 C15 SING Y N 13 XH9 CL17 C16 SING N N 14 XH9 C18 C16 DOUB Y N 15 XH9 N19 C18 SING Y N 16 XH9 C20 N19 DOUB Y N 17 XH9 C14 C13 SING N N 18 XH9 O21 C13 DOUB N N 19 XH9 C05 C04 SING N N 20 XH9 C22 C04 SING Y N 21 XH9 C23 C22 DOUB Y N 22 XH9 C24 C23 SING Y N 23 XH9 C25 C24 DOUB Y N 24 XH9 C03 C25 SING Y N 25 XH9 C09 N12 SING N N 26 XH9 C14 C20 SING Y N 27 XH9 C10 H101 SING N N 28 XH9 C10 H102 SING N N 29 XH9 C15 H151 SING N N 30 XH9 C20 H201 SING N N 31 XH9 C22 H221 SING N N 32 XH9 C24 H241 SING N N 33 XH9 C05 H051 SING N N 34 XH9 C05 H052 SING N N 35 XH9 C07 H072 SING N N 36 XH9 C07 H071 SING N N 37 XH9 C08 H082 SING N N 38 XH9 C08 H081 SING N N 39 XH9 C09 H092 SING N N 40 XH9 C09 H091 SING N N 41 XH9 C11 H111 SING N N 42 XH9 C11 H112 SING N N 43 XH9 C18 H181 SING N N 44 XH9 C23 H231 SING N N 45 XH9 C25 H251 SING N N 46 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor XH9 InChI InChI 1.06 "InChI=1S/C19H19ClN4O/c20-18-10-17(12-22-13-18)19(25)24-7-3-6-23(8-9-24)14-16-5-2-1-4-15(16)11-21/h1-2,4-5,10,12-13H,3,6-9,14H2" XH9 InChIKey InChI 1.06 VIHXPVLCTFBBEL-UHFFFAOYSA-N XH9 SMILES_CANONICAL CACTVS 3.385 "Clc1cncc(c1)C(=O)N2CCCN(CC2)Cc3ccccc3C#N" XH9 SMILES CACTVS 3.385 "Clc1cncc(c1)C(=O)N2CCCN(CC2)Cc3ccccc3C#N" XH9 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc(c(c1)CN2CCCN(CC2)C(=O)c3cc(cnc3)Cl)C#N" XH9 SMILES "OpenEye OEToolkits" 2.0.7 "c1ccc(c(c1)CN2CCCN(CC2)C(=O)c3cc(cnc3)Cl)C#N" # _pdbx_chem_comp_identifier.comp_id XH9 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "2-[[4-(5-chloranylpyridin-3-yl)carbonyl-1,4-diazepan-1-yl]methyl]benzenecarbonitrile" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site XH9 "Create component" 2023-11-02 PDBE XH9 "Initial release" 2024-02-07 RCSB #