data_XHK # _chem_comp.id XHK _chem_comp.name "6-[4-(2-aminoethyl)anilino]-5-chloro-3-methylpyrimidin-4(3H)-one" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C13 H15 Cl N4 O" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-11-17 _chem_comp.pdbx_modified_date 2024-05-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 278.737 _chem_comp.one_letter_code ? _chem_comp.three_letter_code XHK _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8F6G _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal XHK C01 C1 C 0 1 N N N N N N 5.436 -4.923 5.910 4.077 -2.929 0.118 C01 XHK 1 XHK C03 C2 C 0 1 N N N N N N 5.442 -3.979 3.721 1.816 -2.024 0.083 C03 XHK 2 XHK C05 C3 C 0 1 N N N N N N 6.439 -1.968 3.208 1.354 0.236 0.037 C05 XHK 3 XHK C07 C4 C 0 1 Y N N N N N 6.308 -0.970 0.912 -0.937 0.956 -0.123 C07 XHK 4 XHK C08 C5 C 0 1 Y N N N N N 5.434 0.011 0.473 -1.888 1.760 0.493 C08 XHK 5 XHK C09 C6 C 0 1 Y N N N N N 4.966 -0.033 -0.828 -3.230 1.461 0.366 C09 XHK 6 XHK C10 C7 C 0 1 Y N N N N N 5.372 -1.052 -1.675 -3.628 0.362 -0.374 C10 XHK 7 XHK C11 C8 C 0 1 N N N N N N 4.843 -1.086 -3.103 -5.094 0.036 -0.506 C11 XHK 8 XHK C12 C9 C 0 1 N N N N N N 3.620 -0.191 -3.267 -5.514 -0.894 0.635 C12 XHK 9 XHK C14 C10 C 0 1 Y N N N N N 6.244 -2.034 -1.233 -2.685 -0.440 -0.989 C14 XHK 10 XHK C15 C11 C 0 1 Y N N N N N 6.716 -1.991 0.067 -1.341 -0.143 -0.870 C15 XHK 11 XHK C16 C12 C 0 1 N N N N N N 6.834 -1.819 4.515 2.708 0.529 0.046 C16 XHK 12 XHK C18 C13 C 0 1 N N N N N N 6.491 -2.818 5.412 3.621 -0.536 0.080 C18 XHK 13 XHK N02 N1 N 0 1 N N N N N N 5.806 -3.869 4.986 3.145 -1.798 0.093 N02 XHK 14 XHK N04 N2 N 0 1 N N N N N N 5.758 -3.040 2.848 0.954 -1.045 0.056 N04 XHK 15 XHK N06 N3 N 0 1 N N N N N N 6.800 -0.927 2.269 0.422 1.255 0.004 N06 XHK 16 XHK N13 N4 N 0 1 N N N N N N 2.524 -0.939 -3.856 -6.942 -1.212 0.506 N13 XHK 17 XHK O19 O1 O 0 1 N N N N N N 6.808 -2.730 6.551 4.824 -0.324 0.089 O19 XHK 18 XHK CL17 CL1 CL 0 0 N N N N N N 7.752 -0.355 4.958 3.262 2.174 0.022 CL17 XHK 19 XHK H1 H1 H 0 1 N N N N N N 5.813 -4.680 6.914 3.515 -3.863 0.125 H1 XHK 20 XHK H2 H2 H 0 1 N N N N N N 4.340 -5.015 5.942 4.713 -2.895 -0.766 H2 XHK 21 XHK H3 H3 H 0 1 N N N N N N 5.874 -5.875 5.575 4.695 -2.870 1.013 H3 XHK 22 XHK H4 H4 H 0 1 N N N N N N 4.881 -4.844 3.398 1.455 -3.042 0.093 H4 XHK 23 XHK H6 H6 H 0 1 N N N N N N 5.121 0.802 1.139 -1.577 2.617 1.072 H6 XHK 24 XHK H7 H7 H 0 1 N N N N N N 4.285 0.726 -1.183 -3.970 2.085 0.846 H7 XHK 25 XHK H8 H8 H 0 1 N N N N N N 4.566 -2.120 -3.357 -5.676 0.956 -0.458 H8 XHK 26 XHK H9 H9 H 0 1 N N N N N N 5.633 -0.740 -3.785 -5.271 -0.458 -1.461 H9 XHK 27 XHK H10 H10 H 0 1 N N N N N N 3.875 0.655 -3.922 -4.931 -1.813 0.587 H10 XHK 28 XHK H11 H11 H 0 1 N N N N N N 3.312 0.188 -2.281 -5.336 -0.400 1.590 H11 XHK 29 XHK H12 H12 H 0 1 N N N N N N 6.553 -2.827 -1.898 -2.999 -1.297 -1.566 H12 XHK 30 XHK H13 H13 H 0 1 N N N N N N 7.399 -2.749 0.422 -0.605 -0.770 -1.351 H13 XHK 31 XHK H15 H15 H 0 1 N N N N N N 7.392 -0.176 2.561 0.711 2.179 0.068 H15 XHK 32 XHK H16 H16 H 0 1 N N N N N N 1.729 -0.341 -3.958 -7.143 -1.612 -0.398 H16 XHK 33 XHK H17 H17 H 0 1 N N N N N N 2.800 -1.283 -4.754 -7.244 -1.825 1.248 H17 XHK 34 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal XHK N13 C12 SING N N 1 XHK C12 C11 SING N N 2 XHK C11 C10 SING N N 3 XHK C10 C14 DOUB Y N 4 XHK C10 C09 SING Y N 5 XHK C14 C15 SING Y N 6 XHK C09 C08 DOUB Y N 7 XHK C15 C07 DOUB Y N 8 XHK C08 C07 SING Y N 9 XHK C07 N06 SING N N 10 XHK N06 C05 SING N N 11 XHK N04 C05 SING N N 12 XHK N04 C03 DOUB N N 13 XHK C05 C16 DOUB N N 14 XHK C03 N02 SING N N 15 XHK C16 CL17 SING N N 16 XHK C16 C18 SING N N 17 XHK N02 C18 SING N N 18 XHK N02 C01 SING N N 19 XHK C18 O19 DOUB N N 20 XHK C01 H1 SING N N 21 XHK C01 H2 SING N N 22 XHK C01 H3 SING N N 23 XHK C03 H4 SING N N 24 XHK C08 H6 SING N N 25 XHK C09 H7 SING N N 26 XHK C11 H8 SING N N 27 XHK C11 H9 SING N N 28 XHK C12 H10 SING N N 29 XHK C12 H11 SING N N 30 XHK C14 H12 SING N N 31 XHK C15 H13 SING N N 32 XHK N06 H15 SING N N 33 XHK N13 H16 SING N N 34 XHK N13 H17 SING N N 35 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor XHK SMILES ACDLabs 12.01 "ClC1=C(N=CN(C)C1=O)Nc1ccc(CCN)cc1" XHK InChI InChI 1.06 "InChI=1S/C13H15ClN4O/c1-18-8-16-12(11(14)13(18)19)17-10-4-2-9(3-5-10)6-7-15/h2-5,8,17H,6-7,15H2,1H3" XHK InChIKey InChI 1.06 SGIPWPOFBZCITE-UHFFFAOYSA-N XHK SMILES_CANONICAL CACTVS 3.385 "CN1C=NC(=C(Cl)C1=O)Nc2ccc(CCN)cc2" XHK SMILES CACTVS 3.385 "CN1C=NC(=C(Cl)C1=O)Nc2ccc(CCN)cc2" XHK SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CN1C=NC(=C(C1=O)Cl)Nc2ccc(cc2)CCN" XHK SMILES "OpenEye OEToolkits" 2.0.7 "CN1C=NC(=C(C1=O)Cl)Nc2ccc(cc2)CCN" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier XHK "SYSTEMATIC NAME" ACDLabs 12.01 "6-[4-(2-aminoethyl)anilino]-5-chloro-3-methylpyrimidin-4(3H)-one" XHK "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "6-[[4-(2-azanylethyl)phenyl]amino]-5-chloranyl-3-methyl-pyrimidin-4-one" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site XHK "Create component" 2022-11-17 RCSB XHK "Initial release" 2024-05-22 RCSB #