data_XI8 # _chem_comp.id XI8 _chem_comp.name "2-[(5M,9aM)-7-(1-acetylpiperidin-4-yl)-4-oxo-4H-pyrido[1,2-a]pyrimidin-3-yl]-N-[(3,4-dichlorophenyl)methyl]-N-methylacetamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C25 H26 Cl2 N4 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-06-06 _chem_comp.pdbx_modified_date 2024-12-13 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 501.405 _chem_comp.one_letter_code ? _chem_comp.three_letter_code XI8 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7G7G _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal XI8 C10 C1 C 0 1 N N N N N N -18.254 14.528 44.167 3.601 -2.901 0.739 C10 XI8 1 XI8 C11 C2 C 0 1 N N N N N N -17.402 13.886 45.165 2.255 -2.909 0.329 C11 XI8 2 XI8 C13 C3 C 0 1 N N N N N N -16.583 14.400 42.498 3.780 -0.661 -0.074 C13 XI8 3 XI8 C15 C4 C 0 1 N N N N N N -15.175 12.964 45.615 0.431 -1.803 -0.660 C15 XI8 4 XI8 C17 C5 C 0 1 N N N N N N -15.624 12.633 46.949 -0.339 -2.952 -0.450 C17 XI8 5 XI8 C18 C6 C 0 1 N N N N N N -16.936 12.976 47.300 0.247 -4.048 0.154 C18 XI8 6 XI8 C20 C7 C 0 1 N N N N N N -14.710 11.872 47.891 -1.784 -2.994 -0.877 C20 XI8 7 XI8 C21 C8 C 0 1 N N N N N N -14.409 10.475 47.364 -2.645 -2.400 0.208 C21 XI8 8 XI8 C23 C9 C 0 1 N N N N N N -16.324 14.568 41.044 4.607 0.578 -0.301 C23 XI8 9 XI8 C24 C10 C 0 1 N N N N N N -16.909 13.931 38.717 6.618 1.507 -1.456 C24 XI8 10 XI8 C26 C11 C 0 1 N N N N N N -14.584 14.697 39.207 5.924 2.385 0.812 C26 XI8 11 XI8 C27 C12 C 0 1 N N N N N N -14.752 14.452 40.694 5.113 1.106 1.043 C27 XI8 12 XI8 C28 C13 C 0 1 N N N N N N -14.996 12.714 37.647 8.273 2.382 0.122 C28 XI8 13 XI8 C1 C14 C 0 1 Y N N N N N -12.516 8.376 45.798 -4.968 -0.272 0.867 C1 XI8 14 XI8 C2 C15 C 0 1 Y N N N N N -12.944 7.268 45.027 -4.057 0.609 1.420 C2 XI8 15 XI8 C3 C16 C 0 1 Y N N N N N -12.420 7.086 43.772 -4.189 1.968 1.203 C3 XI8 16 XI8 C4 C17 C 0 1 Y N N N N N -11.521 8.018 43.328 -5.234 2.447 0.432 C4 XI8 17 XI8 C5 C18 C 0 1 Y N N N N N -11.096 9.127 44.067 -6.145 1.564 -0.122 C5 XI8 18 XI8 C6 C19 C 0 1 Y N N N N N -11.579 9.358 45.314 -6.011 0.205 0.096 C6 XI8 19 XI8 CL7 CL1 CL 0 0 N N N N N N -9.859 10.145 43.424 -7.457 2.163 -1.089 CL7 XI8 20 XI8 CL8 CL2 CL 0 0 N N N N N N -10.877 7.747 41.735 -5.401 4.153 0.160 CL8 XI8 21 XI8 N9 N1 N 0 1 N N N N N N -13.228 9.836 47.745 -3.981 -2.331 0.045 N9 XI8 22 XI8 C12 C20 C 0 1 N N N N N N -15.761 13.845 43.425 2.485 -0.689 -0.463 C12 XI8 23 XI8 C14 C21 C 0 1 N N N N N N -17.882 14.782 42.931 4.356 -1.784 0.537 C14 XI8 24 XI8 O16 O1 O 0 1 N N N N N N -13.992 12.799 45.145 -0.056 -0.818 -1.192 O16 XI8 25 XI8 N19 N2 N 0 1 N N N N N N -17.754 13.571 46.369 1.517 -4.000 0.525 N19 XI8 26 XI8 O22 O2 O 0 1 N N N N N N -15.203 9.884 46.630 -2.136 -1.983 1.226 O22 XI8 27 XI8 N25 N3 N 0 1 N N N N N N -15.456 13.713 38.471 6.986 2.102 -0.164 N25 XI8 28 XI8 O29 O3 O 0 1 N N N N N N -15.784 11.920 37.076 8.576 2.780 1.226 O29 XI8 29 XI8 C30 C22 C 0 1 N N N N N N -13.491 12.572 37.452 9.335 2.200 -0.932 C30 XI8 30 XI8 C31 C23 C 0 1 N N N N N N -17.167 13.592 40.214 5.799 0.238 -1.199 C31 XI8 31 XI8 N32 N4 N 0 1 N N N N N N -16.089 13.575 44.705 1.723 -1.799 -0.265 N32 XI8 32 XI8 C33 C24 C 0 1 N N N N N N -12.266 10.422 48.657 -4.596 -2.835 -1.185 C33 XI8 33 XI8 C34 C25 C 0 1 N N N N N N -12.994 8.462 47.239 -4.819 -1.753 1.099 C34 XI8 34 XI8 H38 H1 H 0 1 N N N N N N -19.253 14.812 44.463 4.032 -3.771 1.213 H38 XI8 35 XI8 H41 H2 H 0 1 N N N N N N -17.303 12.774 48.296 -0.332 -4.943 0.324 H41 XI8 36 XI8 H43 H3 H 0 1 N N N N N N -13.765 12.425 47.998 -1.908 -2.421 -1.795 H43 XI8 37 XI8 H42 H4 H 0 1 N N N N N N -15.199 11.787 48.873 -2.081 -4.028 -1.051 H42 XI8 38 XI8 H44 H5 H 0 1 N N N N N N -16.631 15.586 40.762 3.995 1.340 -0.784 H44 XI8 39 XI8 H46 H6 H 0 1 N N N N N N -17.506 13.271 38.071 6.021 2.217 -2.028 H46 XI8 40 XI8 H45 H7 H 0 1 N N N N N N -17.174 14.979 38.515 7.520 1.253 -2.012 H45 XI8 41 XI8 H48 H8 H 0 1 N N N N N N -13.532 14.550 38.921 5.271 3.167 0.424 H48 XI8 42 XI8 H47 H9 H 0 1 N N N N N N -14.891 15.724 38.961 6.367 2.712 1.752 H47 XI8 43 XI8 H49 H10 H 0 1 N N N N N N -14.186 15.205 41.263 4.264 1.326 1.690 H49 XI8 44 XI8 H50 H11 H 0 1 N N N N N N -14.386 13.447 40.951 5.746 0.354 1.515 H50 XI8 45 XI8 H35 H12 H 0 1 N N N N N N -13.673 6.576 45.421 -3.242 0.236 2.022 H35 XI8 46 XI8 H36 H13 H 0 1 N N N N N N -12.705 6.243 43.160 -3.478 2.656 1.636 H36 XI8 47 XI8 H37 H14 H 0 1 N N N N N N -11.283 10.215 45.901 -6.723 -0.484 -0.335 H37 XI8 48 XI8 H39 H15 H 0 1 N N N N N N -14.758 13.598 43.110 2.051 0.181 -0.933 H39 XI8 49 XI8 H40 H16 H 0 1 N N N N N N -18.559 15.277 42.250 5.390 -1.764 0.847 H40 XI8 50 XI8 H53 H17 H 0 1 N N N N N N -13.286 11.723 36.783 9.791 1.216 -0.823 H53 XI8 51 XI8 H51 H18 H 0 1 N N N N N N -13.090 13.495 37.007 8.884 2.284 -1.921 H51 XI8 52 XI8 H52 H19 H 0 1 N N N N N N -13.010 12.395 38.426 10.098 2.969 -0.815 H52 XI8 53 XI8 H55 H20 H 0 1 N N N N N N -16.863 12.556 40.425 6.425 -0.506 -0.706 H55 XI8 54 XI8 H54 H21 H 0 1 N N N N N N -18.234 13.717 40.452 5.438 -0.160 -2.147 H54 XI8 55 XI8 H57 H22 H 0 1 N N N N N N -11.424 9.728 48.799 -4.849 -3.888 -1.061 H57 XI8 56 XI8 H56 H23 H 0 1 N N N N N N -11.894 11.369 48.239 -5.502 -2.266 -1.398 H56 XI8 57 XI8 H58 H24 H 0 1 N N N N N N -12.750 10.614 49.626 -3.896 -2.724 -2.013 H58 XI8 58 XI8 H60 H25 H 0 1 N N N N N N -13.939 7.905 47.318 -4.351 -1.924 2.069 H60 XI8 59 XI8 H59 H26 H 0 1 N N N N N N -12.234 7.989 47.878 -5.801 -2.225 1.082 H59 XI8 60 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal XI8 C1 C6 DOUB Y N 1 XI8 C1 C2 SING Y N 2 XI8 C1 C34 SING N N 3 XI8 C2 C3 DOUB Y N 4 XI8 C3 C4 SING Y N 5 XI8 C4 CL8 SING N N 6 XI8 C4 C5 DOUB Y N 7 XI8 C5 C6 SING Y N 8 XI8 C5 CL7 SING N N 9 XI8 N9 C21 SING N N 10 XI8 N9 C33 SING N N 11 XI8 N9 C34 SING N N 12 XI8 C10 C11 SING N N 13 XI8 C10 C14 DOUB N N 14 XI8 C11 N19 DOUB N N 15 XI8 C11 N32 SING N N 16 XI8 C12 N32 SING N N 17 XI8 C12 C13 DOUB N N 18 XI8 C13 C23 SING N N 19 XI8 C13 C14 SING N N 20 XI8 C15 O16 DOUB N N 21 XI8 C15 C17 SING N N 22 XI8 C15 N32 SING N N 23 XI8 C17 C18 DOUB N N 24 XI8 C17 C20 SING N N 25 XI8 C18 N19 SING N N 26 XI8 C20 C21 SING N N 27 XI8 C21 O22 DOUB N N 28 XI8 C23 C27 SING N N 29 XI8 C23 C31 SING N N 30 XI8 C24 C31 SING N N 31 XI8 C24 N25 SING N N 32 XI8 N25 C26 SING N N 33 XI8 N25 C28 SING N N 34 XI8 C26 C27 SING N N 35 XI8 C28 O29 DOUB N N 36 XI8 C28 C30 SING N N 37 XI8 C10 H38 SING N N 38 XI8 C18 H41 SING N N 39 XI8 C20 H43 SING N N 40 XI8 C20 H42 SING N N 41 XI8 C23 H44 SING N N 42 XI8 C24 H46 SING N N 43 XI8 C24 H45 SING N N 44 XI8 C26 H48 SING N N 45 XI8 C26 H47 SING N N 46 XI8 C27 H49 SING N N 47 XI8 C27 H50 SING N N 48 XI8 C2 H35 SING N N 49 XI8 C3 H36 SING N N 50 XI8 C6 H37 SING N N 51 XI8 C12 H39 SING N N 52 XI8 C14 H40 SING N N 53 XI8 C30 H53 SING N N 54 XI8 C30 H51 SING N N 55 XI8 C30 H52 SING N N 56 XI8 C31 H55 SING N N 57 XI8 C31 H54 SING N N 58 XI8 C33 H57 SING N N 59 XI8 C33 H56 SING N N 60 XI8 C33 H58 SING N N 61 XI8 C34 H60 SING N N 62 XI8 C34 H59 SING N N 63 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor XI8 SMILES ACDLabs 12.01 "O=C(C)N1CCC(CC1)C=1C=CC2=NC=C(CC(=O)N(C)Cc3ccc(Cl)c(Cl)c3)C(=O)N2C=1" XI8 InChI InChI 1.06 "InChI=1S/C25H26Cl2N4O3/c1-16(32)30-9-7-18(8-10-30)19-4-6-23-28-13-20(25(34)31(23)15-19)12-24(33)29(2)14-17-3-5-21(26)22(27)11-17/h3-6,11,13,15,18H,7-10,12,14H2,1-2H3" XI8 InChIKey InChI 1.06 MPYRGYCVCBKWMZ-UHFFFAOYSA-N XI8 SMILES_CANONICAL CACTVS 3.385 "CN(Cc1ccc(Cl)c(Cl)c1)C(=O)CC2=CN=C3C=CC(=CN3C2=O)C4CCN(CC4)C(C)=O" XI8 SMILES CACTVS 3.385 "CN(Cc1ccc(Cl)c(Cl)c1)C(=O)CC2=CN=C3C=CC(=CN3C2=O)C4CCN(CC4)C(C)=O" XI8 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(=O)N1CCC(CC1)C2=CN3C(=NC=C(C3=O)CC(=O)N(C)Cc4ccc(c(c4)Cl)Cl)C=C2" XI8 SMILES "OpenEye OEToolkits" 2.0.7 "CC(=O)N1CCC(CC1)C2=CN3C(=NC=C(C3=O)CC(=O)N(C)Cc4ccc(c(c4)Cl)Cl)C=C2" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier XI8 "SYSTEMATIC NAME" ACDLabs 12.01 "2-[(5M,9aM)-7-(1-acetylpiperidin-4-yl)-4-oxo-4H-pyrido[1,2-a]pyrimidin-3-yl]-N-[(3,4-dichlorophenyl)methyl]-N-methylacetamide" XI8 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "~{N}-[(3,4-dichlorophenyl)methyl]-2-[7-(1-ethanoylpiperidin-4-yl)-4-oxidanylidene-pyrido[1,2-a]pyrimidin-3-yl]-~{N}-methyl-ethanamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site XI8 "Create component" 2023-06-06 RCSB XI8 "Initial release" 2024-12-18 RCSB #