data_XIB # _chem_comp.id XIB _chem_comp.name "N-[(benzyloxy)carbonyl]-L-tyrosyl-D-alanine" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C20 H22 N2 O6" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-11-21 _chem_comp.pdbx_modified_date 2023-08-25 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 386.398 _chem_comp.one_letter_code ? _chem_comp.three_letter_code XIB _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8F7K _chem_comp.pdbx_subcomponent_list "PHQ TYR DAL" _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal XIB C12 C16 C 0 1 N N N 174.741 188.261 97.416 0.946 0.626 -0.415 C1 PHQ 1 XIB O3 O3 O 0 1 N N N 175.026 187.478 98.300 0.541 0.941 -1.516 O1 PHQ 2 XIB O4 O4 O 0 1 N N N 173.484 188.680 97.159 2.221 0.887 -0.067 O2 PHQ 3 XIB C13 C7 C 0 1 N N N 172.908 188.276 95.889 3.053 1.546 -1.058 C2 PHQ 4 XIB C14 C17 C 0 1 Y N N 172.253 186.928 95.958 4.435 1.754 -0.495 C3 PHQ 5 XIB C15 C8 C 0 1 Y N N 171.886 186.362 97.165 4.733 2.914 0.196 C4 PHQ 6 XIB C16 C18 C 0 1 Y N N 171.287 185.114 97.203 6.001 3.105 0.712 C5 PHQ 7 XIB C17 C9 C 0 1 Y N N 171.029 184.435 96.038 6.971 2.136 0.538 C6 PHQ 8 XIB C18 C19 C 0 1 Y N N 171.375 184.992 94.836 6.672 0.973 -0.148 C7 PHQ 9 XIB C19 C20 C 0 1 Y N N 171.988 186.236 94.794 5.404 0.782 -0.665 C8 PHQ 10 XIB N2 N2 N 0 1 N N N 175.624 188.833 96.580 0.121 0.017 0.459 N TYR 11 XIB C4 C1 C 0 1 N N S 177.055 188.613 96.671 -1.266 -0.267 0.081 CA TYR 12 XIB C3 C13 C 0 1 N N N 177.767 189.880 97.128 -2.117 0.948 0.345 C TYR 13 XIB O1 O1 O 0 1 N N N 177.200 190.969 97.099 -1.615 1.952 0.805 O TYR 14 XIB C5 C2 C 0 1 N N N 177.628 188.182 95.321 -1.788 -1.445 0.905 CB TYR 15 XIB C6 C3 C 0 1 Y N N 176.851 187.031 94.739 -1.016 -2.689 0.549 CG TYR 16 XIB C7 C4 C 0 1 Y N N 175.697 187.252 94.004 0.134 -3.010 1.245 CD1 TYR 17 XIB C11 C15 C 0 1 Y N N 177.257 185.719 94.939 -1.461 -3.510 -0.471 CD2 TYR 18 XIB C8 C5 C 0 1 Y N N 174.967 186.202 93.476 0.845 -4.150 0.921 CE1 TYR 19 XIB C10 C6 C 0 1 Y N N 176.538 184.660 94.415 -0.755 -4.651 -0.799 CE2 TYR 20 XIB C9 C14 C 0 1 Y N N 175.392 184.903 93.680 0.403 -4.972 -0.105 CZ TYR 21 XIB O2 O2 O 0 1 N N N 174.669 183.872 93.163 1.100 -6.094 -0.427 OH TYR 22 XIB N1 N1 N 0 1 N N N 179.020 189.729 97.559 -3.437 0.919 0.072 N DAL 23 XIB C2 C12 C 0 1 N N R 179.783 190.035 98.761 -4.265 2.100 0.329 CA DAL 24 XIB C1 C11 C 0 1 N N N 179.374 191.389 99.333 -4.717 2.097 1.791 CB DAL 25 XIB C20 C10 C 0 1 N N N 181.298 190.048 98.512 -5.473 2.072 -0.571 C DAL 26 XIB O5 O5 O 0 1 N N N 181.953 189.088 98.958 -5.627 1.160 -1.347 O DAL 27 XIB O6 O6 O 0 1 N N N 181.773 191.014 97.884 -6.378 3.062 -0.509 OXT DAL 28 XIB H15 H8 H 0 1 N N N 172.154 189.020 95.591 2.616 2.510 -1.316 H21 PHQ 29 XIB H16 H9 H 0 1 N N N 173.707 188.242 95.134 3.114 0.924 -1.952 H22 PHQ 30 XIB H17 H10 H 0 1 N N N 172.068 186.897 98.085 3.974 3.671 0.331 H41 PHQ 31 XIB H18 H19 H 0 1 N N N 171.022 184.673 98.153 6.233 4.011 1.251 H51 PHQ 32 XIB H19 H11 H 0 1 N N N 170.555 183.465 96.070 7.962 2.285 0.941 H61 PHQ 33 XIB H20 H20 H 0 1 N N N 171.170 184.461 93.918 7.429 0.214 -0.281 H71 PHQ 34 XIB H21 H21 H 0 1 N N N 172.260 186.667 93.842 5.170 -0.126 -1.200 H81 PHQ 35 XIB H14 H18 H 0 1 N N N 175.279 189.438 95.862 0.445 -0.234 1.338 H TYR 36 XIB H6 H2 H 0 1 N N N 177.257 187.817 97.403 -1.309 -0.517 -0.979 HA TYR 37 XIB H7 H3 H 0 1 N N N 177.584 189.033 94.625 -1.663 -1.231 1.966 HB2 TYR 38 XIB H8 H4 H 0 1 N N N 178.675 187.875 95.458 -2.845 -1.600 0.688 HB3 TYR 39 XIB H9 H5 H 0 1 N N N 175.361 188.265 93.840 0.478 -2.370 2.044 HD1 TYR 40 XIB H13 H17 H 0 1 N N N 178.150 185.522 95.514 -2.362 -3.259 -1.011 HD2 TYR 41 XIB H10 H6 H 0 1 N N N 174.070 186.397 92.907 1.743 -4.400 1.465 HE1 TYR 42 XIB H12 H7 H 0 1 N N N 176.871 183.646 94.579 -1.101 -5.290 -1.598 HE2 TYR 43 XIB H11 H16 H 0 1 N N N 175.086 183.048 93.387 0.822 -6.883 0.059 HH TYR 44 XIB H5 H1 H 0 1 N N N 179.591 189.285 96.869 -3.838 0.116 -0.296 H DAL 45 XIB H4 H15 H 0 1 N N N 179.573 189.268 99.521 -3.684 3.001 0.131 HA DAL 46 XIB H1 H13 H 0 1 N N N 179.560 192.174 98.585 -3.843 2.117 2.442 HB1 DAL 47 XIB H2 H14 H 0 1 N N N 178.304 191.371 99.587 -5.333 2.976 1.982 HB2 DAL 48 XIB H3 H12 H 0 1 N N N 179.963 191.598 100.239 -5.297 1.196 1.990 HB3 DAL 49 XIB H22 H22 H 0 1 N N N 182.713 190.905 97.798 -7.136 3.000 -1.106 HXT DAL 50 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal XIB N1 C2 SING N N 1 XIB N1 C3 SING N N 2 XIB C4 C5 SING N N 3 XIB C4 C3 SING N N 4 XIB C4 N2 SING N N 5 XIB C5 C6 SING N N 6 XIB C6 C7 DOUB Y N 7 XIB C6 C11 SING Y N 8 XIB C7 C8 SING Y N 9 XIB C8 C9 DOUB Y N 10 XIB C10 C9 SING Y N 11 XIB C10 C11 DOUB Y N 12 XIB C13 O4 SING N N 13 XIB C13 C14 SING N N 14 XIB C15 C14 DOUB Y N 15 XIB C15 C16 SING Y N 16 XIB C17 C16 DOUB Y N 17 XIB C17 C18 SING Y N 18 XIB C20 C2 SING N N 19 XIB C20 O5 DOUB N N 20 XIB C20 O6 SING N N 21 XIB C1 C2 SING N N 22 XIB C3 O1 DOUB N N 23 XIB C9 O2 SING N N 24 XIB N2 C12 SING N N 25 XIB C12 O3 DOUB N N 26 XIB C12 O4 SING N N 27 XIB C14 C19 SING Y N 28 XIB C18 C19 DOUB Y N 29 XIB N1 H5 SING N N 30 XIB C4 H6 SING N N 31 XIB C5 H7 SING N N 32 XIB C5 H8 SING N N 33 XIB C7 H9 SING N N 34 XIB C8 H10 SING N N 35 XIB C10 H12 SING N N 36 XIB C13 H15 SING N N 37 XIB C13 H16 SING N N 38 XIB C15 H17 SING N N 39 XIB C17 H19 SING N N 40 XIB C1 H3 SING N N 41 XIB C1 H1 SING N N 42 XIB C1 H2 SING N N 43 XIB C2 H4 SING N N 44 XIB O2 H11 SING N N 45 XIB C11 H13 SING N N 46 XIB N2 H14 SING N N 47 XIB C16 H18 SING N N 48 XIB C18 H20 SING N N 49 XIB C19 H21 SING N N 50 XIB O6 H22 SING N N 51 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor XIB SMILES ACDLabs 12.01 "Oc1ccc(CC(NC(=O)OCc2ccccc2)C(=O)NC(C)C(=O)O)cc1" XIB InChI InChI 1.06 "InChI=1S/C20H22N2O6/c1-13(19(25)26)21-18(24)17(11-14-7-9-16(23)10-8-14)22-20(27)28-12-15-5-3-2-4-6-15/h2-10,13,17,23H,11-12H2,1H3,(H,21,24)(H,22,27)(H,25,26)/t13-,17+/m1/s1" XIB InChIKey InChI 1.06 LKRYTYVDKGHSPS-DYVFJYSZSA-N XIB SMILES_CANONICAL CACTVS 3.385 "C[C@@H](NC(=O)[C@H](Cc1ccc(O)cc1)NC(=O)OCc2ccccc2)C(O)=O" XIB SMILES CACTVS 3.385 "C[CH](NC(=O)[CH](Cc1ccc(O)cc1)NC(=O)OCc2ccccc2)C(O)=O" XIB SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@H](C(=O)O)NC(=O)[C@H](Cc1ccc(cc1)O)NC(=O)OCc2ccccc2" XIB SMILES "OpenEye OEToolkits" 2.0.7 "CC(C(=O)O)NC(=O)C(Cc1ccc(cc1)O)NC(=O)OCc2ccccc2" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier XIB "SYSTEMATIC NAME" ACDLabs 12.01 "N-[(benzyloxy)carbonyl]-L-tyrosyl-D-alanine" XIB "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{R})-2-[[(2~{S})-3-(4-hydroxyphenyl)-2-(phenylmethoxycarbonylamino)propanoyl]amino]propanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site XIB "Create component" 2022-11-21 RCSB XIB "Initial release" 2023-08-30 RCSB #