data_XIM # _chem_comp.id XIM _chem_comp.name "5,6,7,8-TETRAHYDRO-IMIDAZO[1,2-A]PYRIDINE-6,7,8-TRIOL" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C7 H10 N2 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "XYLOSE-DERIVED IMIDAZOLE" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2000-08-17 _chem_comp.pdbx_modified_date 2020-06-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 170.166 _chem_comp.one_letter_code ? _chem_comp.three_letter_code XIM _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1FHD _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal XIM C1 C1 C 0 1 Y N N -64.977 19.679 53.893 1.030 -0.422 0.168 C1 XIM 1 XIM C2 C2 C 0 1 N N S -65.795 19.730 55.236 -0.227 -1.247 0.321 C2 XIM 2 XIM C3 C3 C 0 1 N N S -64.827 19.536 56.428 -1.401 -0.441 -0.248 C3 XIM 3 XIM C4 C4 C 0 1 N N R -63.719 18.524 56.095 -1.365 0.978 0.327 C4 XIM 4 XIM C5 C5 C 0 1 N N N -62.779 19.051 54.993 -0.163 1.734 -0.251 C5 XIM 5 XIM N1 N1 N 0 1 Y N N -63.624 19.365 53.880 1.036 0.907 -0.089 N1 XIM 6 XIM C17 C17 C 0 1 Y N N -63.329 19.426 52.539 2.339 1.303 -0.161 C17 XIM 7 XIM C18 C18 C 0 1 Y N N -64.429 19.752 51.826 3.089 0.203 0.054 C18 XIM 8 XIM N21 N21 N 0 1 Y N N -65.462 19.912 52.661 2.261 -0.836 0.247 N21 XIM 9 XIM O2 O2 O 0 1 N N N -66.553 20.904 55.446 -0.089 -2.473 -0.400 O2 XIM 10 XIM O3 O3 O 0 1 N N N -65.556 19.087 57.552 -2.632 -1.071 0.114 O3 XIM 11 XIM O4 O4 O 0 1 N N N -62.937 18.288 57.248 -2.569 1.664 -0.020 O4 XIM 12 XIM H2 H2 H 0 1 N N N -66.475 18.866 55.227 -0.402 -1.457 1.376 H2 XIM 13 XIM H3 H3 H 0 1 N N N -64.355 20.505 56.648 -1.320 -0.396 -1.334 H3 XIM 14 XIM H4 H4 H 0 1 N N N -64.184 17.590 55.746 -1.275 0.929 1.412 H4 XIM 15 XIM H51 H51 H 0 1 N N N -62.250 19.951 55.339 -0.330 1.931 -1.309 H51 XIM 16 XIM H52 H52 H 0 1 N N N -62.046 18.280 54.713 -0.032 2.675 0.282 H52 XIM 17 XIM H17 H17 H 0 1 N N N -62.354 19.239 52.114 2.699 2.302 -0.354 H17 XIM 18 XIM H18 H18 H 0 1 N N N -64.468 19.865 50.753 4.168 0.164 0.066 H18 XIM 19 XIM HO2 HO2 H 0 1 N N N -67.009 20.843 56.277 0.648 -3.023 -0.103 HO2 XIM 20 XIM HO3 HO3 H 0 1 N N N -64.965 18.967 58.286 -2.722 -1.976 -0.214 HO3 XIM 21 XIM HO4 HO4 H 0 1 N N N -62.252 17.663 57.044 -2.615 2.571 0.312 HO4 XIM 22 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal XIM C1 C2 SING N N 1 XIM C1 N1 SING Y N 2 XIM C1 N21 DOUB Y N 3 XIM C2 C3 SING N N 4 XIM C2 O2 SING N N 5 XIM C2 H2 SING N N 6 XIM C3 C4 SING N N 7 XIM C3 O3 SING N N 8 XIM C3 H3 SING N N 9 XIM C4 C5 SING N N 10 XIM C4 O4 SING N N 11 XIM C4 H4 SING N N 12 XIM C5 N1 SING N N 13 XIM C5 H51 SING N N 14 XIM C5 H52 SING N N 15 XIM N1 C17 SING Y N 16 XIM C17 C18 DOUB Y N 17 XIM C17 H17 SING N N 18 XIM C18 N21 SING Y N 19 XIM C18 H18 SING N N 20 XIM O2 HO2 SING N N 21 XIM O3 HO3 SING N N 22 XIM O4 HO4 SING N N 23 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor XIM SMILES ACDLabs 12.01 "n1ccn2c1C(O)C(O)C(O)C2" XIM InChI InChI 1.03 "InChI=1S/C7H10N2O3/c10-4-3-9-2-1-8-7(9)6(12)5(4)11/h1-2,4-6,10-12H,3H2/t4-,5+,6-/m1/s1" XIM InChIKey InChI 1.03 QMHSBFMMOLGPGR-NGJCXOISSA-N XIM SMILES_CANONICAL CACTVS 3.370 "O[C@@H]1Cn2ccnc2[C@H](O)[C@H]1O" XIM SMILES CACTVS 3.370 "O[CH]1Cn2ccnc2[CH](O)[CH]1O" XIM SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "c1cn2c(n1)[C@@H]([C@H]([C@@H](C2)O)O)O" XIM SMILES "OpenEye OEToolkits" 1.7.6 "c1cn2c(n1)C(C(C(C2)O)O)O" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier XIM "SYSTEMATIC NAME" ACDLabs 12.01 "(6R,7S,8S)-5,6,7,8-tetrahydroimidazo[1,2-a]pyridine-6,7,8-triol" XIM "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "(6R,7S,8S)-5,6,7,8-tetrahydroimidazo[1,2-a]pyridine-6,7,8-triol" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site XIM "Create component" 2000-08-17 RCSB XIM "Modify descriptor" 2011-06-04 RCSB XIM "Modify linking type" 2012-12-21 RCSB XIM "Modify synonyms" 2020-06-05 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id XIM _pdbx_chem_comp_synonyms.name "XYLOSE-DERIVED IMIDAZOLE" _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##