data_XJ3 # _chem_comp.id XJ3 _chem_comp.name "N'-[[3-[4-(3,5-dimethyl-1,2-oxazol-4-yl)-5-methyl-6-(oxan-4-ylamino)pyrimidin-2-yl]phenyl]methyl]-N-methyl-ethane-1,2-diamine" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C25 H34 N6 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2019-01-10 _chem_comp.pdbx_modified_date 2021-11-19 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 450.576 _chem_comp.one_letter_code ? _chem_comp.three_letter_code XJ3 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6IZU _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal XJ3 C1 C1 C 0 1 N N N 15.635 17.025 283.359 -8.772 0.830 2.397 C1 XJ3 1 XJ3 C3 C2 C 0 1 N N N 14.765 18.852 282.018 -6.681 1.302 1.272 C3 XJ3 2 XJ3 C4 C3 C 0 1 N N N 15.311 20.041 281.183 -5.982 1.310 -0.089 C4 XJ3 3 XJ3 C6 C4 C 0 1 N N N 14.562 21.904 282.543 -3.891 1.781 -1.214 C6 XJ3 4 XJ3 C7 C5 C 0 1 Y N N 13.525 23.082 282.543 -2.474 2.249 -1.006 C7 XJ3 5 XJ3 C8 C6 C 0 1 Y N N 12.250 22.865 283.063 -1.478 1.331 -0.739 C8 XJ3 6 XJ3 C9 C7 C 0 1 Y N N 11.327 23.901 283.045 -0.167 1.765 -0.547 C9 XJ3 7 XJ3 C10 C8 C 0 1 Y N N 9.943 23.612 283.665 0.907 0.784 -0.260 C10 XJ3 8 XJ3 C12 C9 C 0 1 Y N N 7.660 23.912 283.704 1.539 -1.414 0.060 C12 XJ3 9 XJ3 C14 C10 C 0 1 N N N 6.584 25.451 282.014 -0.175 -3.187 -0.081 C14 XJ3 10 XJ3 C15 C11 C 0 1 N N N 6.815 26.765 282.599 -0.413 -4.524 0.628 C15 XJ3 11 XJ3 C16 C12 C 0 1 N N N 6.631 27.921 281.609 -1.838 -5.001 0.336 C16 XJ3 12 XJ3 C18 C13 C 0 1 N N N 5.183 26.530 280.240 -1.856 -3.887 -1.788 C18 XJ3 13 XJ3 C19 C14 C 0 1 N N N 5.323 25.393 281.250 -0.432 -3.365 -1.581 C19 XJ3 14 XJ3 C20 C15 C 0 1 Y N N 7.571 23.068 284.823 2.853 -0.998 0.261 C20 XJ3 15 XJ3 C21 C16 C 0 1 N N N 6.217 22.764 285.443 3.944 -1.996 0.552 C21 XJ3 16 XJ3 C22 C17 C 0 1 Y N N 8.773 22.515 285.336 3.136 0.366 0.179 C22 XJ3 17 XJ3 C23 C18 C 0 1 Y N N 8.811 21.564 286.581 4.519 0.860 0.384 C23 XJ3 18 XJ3 C24 C19 C 0 1 Y N N 8.471 21.874 287.881 5.293 1.587 -0.477 C24 XJ3 19 XJ3 C25 C20 C 0 1 N N N 7.934 23.190 288.455 4.911 2.063 -1.855 C25 XJ3 20 XJ3 C28 C21 C 0 1 Y N N 9.249 20.224 286.531 5.353 0.694 1.526 C28 XJ3 21 XJ3 C29 C22 C 0 1 N N N 9.726 19.452 285.297 5.008 -0.033 2.800 C29 XJ3 22 XJ3 C31 C23 C 0 1 Y N N 11.658 25.151 282.515 0.130 3.124 -0.626 C31 XJ3 23 XJ3 C32 C24 C 0 1 Y N N 12.932 25.359 281.988 -0.874 4.033 -0.893 C32 XJ3 24 XJ3 C33 C25 C 0 1 Y N N 13.861 24.321 281.998 -2.172 3.596 -1.089 C33 XJ3 25 XJ3 N2 N1 N 0 1 N N N 15.816 17.812 282.127 -8.069 0.850 1.108 N2 XJ3 26 XJ3 N05 N2 N 0 1 N N N 14.351 21.167 281.275 -4.594 1.761 0.075 N05 XJ3 27 XJ3 N11 N3 N 0 1 Y N N 8.851 24.155 283.136 0.603 -0.505 -0.195 N11 XJ3 28 XJ3 N13 N4 N 0 1 N N N 6.442 24.506 283.118 1.210 -2.759 0.131 N13 XJ3 29 XJ3 N27 N5 N 0 1 Y N N 9.137 19.744 287.773 6.472 1.295 1.250 N27 XJ3 30 XJ3 N30 N6 N 0 1 Y N N 9.919 22.816 284.737 2.146 1.218 -0.080 N30 XJ3 31 XJ3 O17 O1 O 0 1 N N N 5.367 27.836 280.869 -2.020 -5.116 -1.077 O17 XJ3 32 XJ3 O26 O2 O 0 1 Y N N 8.666 20.770 288.567 6.458 1.794 0.149 O26 XJ3 33 XJ3 H1 H1 H 0 1 N N N 16.422 16.259 283.424 -9.797 0.492 2.247 H1 XJ3 34 XJ3 H2 H2 H 0 1 N N N 15.699 17.691 284.232 -8.262 0.150 3.079 H2 XJ3 35 XJ3 H3 H3 H 0 1 N N N 14.649 16.537 283.341 -8.779 1.834 2.823 H3 XJ3 36 XJ3 H4 H4 H 0 1 N N N 14.489 19.204 283.023 -6.156 0.625 1.946 H4 XJ3 37 XJ3 H5 H5 H 0 1 N N N 13.879 18.430 281.522 -6.674 2.309 1.690 H5 XJ3 38 XJ3 H6 H6 H 0 1 N N N 15.423 19.735 280.132 -5.990 0.303 -0.507 H6 XJ3 39 XJ3 H7 H7 H 0 1 N N N 16.288 20.354 281.580 -6.507 1.987 -0.763 H7 XJ3 40 XJ3 H8 H8 H 0 1 N N N 14.386 21.241 283.403 -4.402 2.462 -1.896 H8 XJ3 41 XJ3 H9 H9 H 0 1 N N N 15.588 22.299 282.588 -3.884 0.778 -1.640 H9 XJ3 42 XJ3 H10 H10 H 0 1 N N N 11.984 21.903 283.475 -1.714 0.279 -0.679 H10 XJ3 43 XJ3 H11 H11 H 0 1 N N N 7.429 25.164 281.371 -0.854 -2.435 0.320 H11 XJ3 44 XJ3 H12 H12 H 0 1 N N N 7.845 26.798 282.984 0.301 -5.262 0.263 H12 XJ3 45 XJ3 H13 H13 H 0 1 N N N 6.108 26.904 283.431 -0.284 -4.394 1.703 H13 XJ3 46 XJ3 H14 H14 H 0 1 N N N 7.462 27.904 280.889 -1.998 -5.973 0.803 H14 XJ3 47 XJ3 H15 H15 H 0 1 N N N 6.649 28.869 282.167 -2.552 -4.282 0.737 H15 XJ3 48 XJ3 H16 H16 H 0 1 N N N 4.179 26.488 279.792 -2.570 -3.153 -1.414 H16 XJ3 49 XJ3 H17 H17 H 0 1 N N N 5.941 26.403 279.453 -2.031 -4.056 -2.851 H17 XJ3 50 XJ3 H18 H18 H 0 1 N N N 4.482 25.447 281.957 -0.319 -2.405 -2.086 H18 XJ3 51 XJ3 H19 H19 H 0 1 N N N 5.285 24.436 280.708 0.281 -4.080 -1.991 H19 XJ3 52 XJ3 H20 H20 H 0 1 N N N 5.786 21.873 284.964 4.323 -2.404 -0.385 H20 XJ3 53 XJ3 H21 H21 H 0 1 N N N 6.341 22.578 286.520 4.755 -1.503 1.088 H21 XJ3 54 XJ3 H22 H22 H 0 1 N N N 5.545 23.622 285.294 3.543 -2.804 1.164 H22 XJ3 55 XJ3 H23 H23 H 0 1 N N N 7.737 23.068 289.530 4.448 3.047 -1.785 H23 XJ3 56 XJ3 H24 H24 H 0 1 N N N 8.679 23.986 288.307 5.802 2.124 -2.479 H24 XJ3 57 XJ3 H25 H25 H 0 1 N N N 7.001 23.461 287.940 4.204 1.361 -2.299 H25 XJ3 58 XJ3 H26 H26 H 0 1 N N N 9.971 18.418 285.582 5.375 -1.058 2.744 H26 XJ3 59 XJ3 H27 H27 H 0 1 N N N 8.929 19.444 284.539 5.473 0.474 3.645 H27 XJ3 60 XJ3 H28 H28 H 0 1 N N N 10.621 19.939 284.883 3.925 -0.041 2.932 H28 XJ3 61 XJ3 H29 H29 H 0 1 N N N 10.932 25.950 282.514 1.143 3.466 -0.477 H29 XJ3 62 XJ3 H30 H30 H 0 1 N N N 13.197 26.321 281.574 -0.644 5.086 -0.959 H30 XJ3 63 XJ3 H31 H31 H 0 1 N N N 14.845 24.476 281.582 -2.954 4.311 -1.298 H31 XJ3 64 XJ3 H32 H32 H 0 1 N N N 15.760 17.203 281.336 -8.559 1.424 0.438 H32 XJ3 65 XJ3 H34 H34 H 0 1 N N N 14.492 21.787 280.503 -4.559 2.666 0.521 H34 XJ3 66 XJ3 H36 H36 H 0 1 N N N 5.964 24.984 283.855 1.897 -3.417 0.321 H36 XJ3 67 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal XJ3 C18 O17 SING N N 1 XJ3 C18 C19 SING N N 2 XJ3 O17 C16 SING N N 3 XJ3 C4 N05 SING N N 4 XJ3 C4 C3 SING N N 5 XJ3 C19 C14 SING N N 6 XJ3 N05 C6 SING N N 7 XJ3 C16 C15 SING N N 8 XJ3 C32 C33 DOUB Y N 9 XJ3 C32 C31 SING Y N 10 XJ3 C33 C7 SING Y N 11 XJ3 C14 C15 SING N N 12 XJ3 C14 N13 SING N N 13 XJ3 C3 N2 SING N N 14 XJ3 N2 C1 SING N N 15 XJ3 C31 C9 DOUB Y N 16 XJ3 C7 C6 SING N N 17 XJ3 C7 C8 DOUB Y N 18 XJ3 C9 C8 SING Y N 19 XJ3 C9 C10 SING N N 20 XJ3 N13 C12 SING N N 21 XJ3 N11 C10 DOUB Y N 22 XJ3 N11 C12 SING Y N 23 XJ3 C10 N30 SING Y N 24 XJ3 C12 C20 DOUB Y N 25 XJ3 N30 C22 DOUB Y N 26 XJ3 C20 C22 SING Y N 27 XJ3 C20 C21 SING N N 28 XJ3 C29 C28 SING N N 29 XJ3 C22 C23 SING N N 30 XJ3 C28 C23 SING Y N 31 XJ3 C28 N27 DOUB Y N 32 XJ3 C23 C24 DOUB Y N 33 XJ3 N27 O26 SING Y N 34 XJ3 C24 C25 SING N N 35 XJ3 C24 O26 SING Y N 36 XJ3 C1 H1 SING N N 37 XJ3 C1 H2 SING N N 38 XJ3 C1 H3 SING N N 39 XJ3 C3 H4 SING N N 40 XJ3 C3 H5 SING N N 41 XJ3 C4 H6 SING N N 42 XJ3 C4 H7 SING N N 43 XJ3 C6 H8 SING N N 44 XJ3 C6 H9 SING N N 45 XJ3 C8 H10 SING N N 46 XJ3 C14 H11 SING N N 47 XJ3 C15 H12 SING N N 48 XJ3 C15 H13 SING N N 49 XJ3 C16 H14 SING N N 50 XJ3 C16 H15 SING N N 51 XJ3 C18 H16 SING N N 52 XJ3 C18 H17 SING N N 53 XJ3 C19 H18 SING N N 54 XJ3 C19 H19 SING N N 55 XJ3 C21 H20 SING N N 56 XJ3 C21 H21 SING N N 57 XJ3 C21 H22 SING N N 58 XJ3 C25 H23 SING N N 59 XJ3 C25 H24 SING N N 60 XJ3 C25 H25 SING N N 61 XJ3 C29 H26 SING N N 62 XJ3 C29 H27 SING N N 63 XJ3 C29 H28 SING N N 64 XJ3 C31 H29 SING N N 65 XJ3 C32 H30 SING N N 66 XJ3 C33 H31 SING N N 67 XJ3 N2 H32 SING N N 68 XJ3 N05 H34 SING N N 69 XJ3 N13 H36 SING N N 70 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor XJ3 InChI InChI 1.03 "InChI=1S/C25H34N6O2/c1-16-23(22-17(2)31-33-18(22)3)29-25(30-24(16)28-21-8-12-32-13-9-21)20-7-5-6-19(14-20)15-27-11-10-26-4/h5-7,14,21,26-27H,8-13,15H2,1-4H3,(H,28,29,30)" XJ3 InChIKey InChI 1.03 HUESDICJTDCQLW-UHFFFAOYSA-N XJ3 SMILES_CANONICAL CACTVS 3.385 "CNCCNCc1cccc(c1)c2nc(NC3CCOCC3)c(C)c(n2)c4c(C)onc4C" XJ3 SMILES CACTVS 3.385 "CNCCNCc1cccc(c1)c2nc(NC3CCOCC3)c(C)c(n2)c4c(C)onc4C" XJ3 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "Cc1c(nc(nc1NC2CCOCC2)c3cccc(c3)CNCCNC)c4c(noc4C)C" XJ3 SMILES "OpenEye OEToolkits" 2.0.6 "Cc1c(nc(nc1NC2CCOCC2)c3cccc(c3)CNCCNC)c4c(noc4C)C" # _pdbx_chem_comp_identifier.comp_id XJ3 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.6 _pdbx_chem_comp_identifier.identifier "~{N}'-[[3-[4-(3,5-dimethyl-1,2-oxazol-4-yl)-5-methyl-6-(oxan-4-ylamino)pyrimidin-2-yl]phenyl]methyl]-~{N}-methyl-ethane-1,2-diamine" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site XJ3 "Create component" 2019-01-10 PDBJ XJ3 "Initial release" 2021-11-24 RCSB ##