data_XJ6 # _chem_comp.id XJ6 _chem_comp.name "(2-{[(2S)-5-chloro-2,3-dihydro-1H-inden-2-yl]amino}pyrimidin-5-yl)(6-oxa-1-azaspiro[3.3]heptan-1-yl)methanone" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C19 H19 Cl N4 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-06-07 _chem_comp.pdbx_modified_date 2024-12-13 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 370.833 _chem_comp.one_letter_code ? _chem_comp.three_letter_code XJ6 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7G3H _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal XJ6 C10 C1 C 0 1 N N N N N N -12.820 6.203 44.240 -2.642 0.012 -1.007 C10 XJ6 1 XJ6 C15 C2 C 0 1 Y N N N N N -14.220 9.559 48.291 2.773 1.035 -0.114 C15 XJ6 2 XJ6 C16 C3 C 0 1 Y N N N N N -13.112 8.914 47.764 1.853 0.017 0.173 C16 XJ6 3 XJ6 C18 C4 C 0 1 N N N N N N -14.161 10.930 48.880 4.222 0.759 -0.145 C18 XJ6 4 XJ6 C21 C5 C 0 1 N N N N N N -11.593 10.972 49.462 4.026 -1.835 0.043 C21 XJ6 5 XJ6 C22 C6 C 0 1 N N N N N N -11.314 12.166 50.394 5.365 -2.403 -0.469 C22 XJ6 6 XJ6 C23 C7 C 0 1 N N N N N N -12.778 12.573 50.271 5.991 -1.124 0.085 C23 XJ6 7 XJ6 C24 C8 C 0 1 N N N N N N -13.261 13.907 49.676 7.228 -0.496 -0.559 C24 XJ6 8 XJ6 C26 C9 C 0 1 N N N N N N -13.636 12.975 51.481 6.771 -1.120 1.400 C26 XJ6 9 XJ6 CL1 CL1 CL 0 0 N N N N N N -10.423 1.217 41.953 -8.346 -0.884 0.625 CL1 XJ6 10 XJ6 C2 C10 C 0 1 Y N N N N N -11.072 2.709 42.582 -6.705 -0.679 0.096 C2 XJ6 11 XJ6 C3 C11 C 0 1 Y N N N N N -10.627 3.899 42.065 -6.226 -1.413 -0.974 C3 XJ6 12 XJ6 C4 C12 C 0 1 Y N N N N N -11.161 5.080 42.546 -4.920 -1.248 -1.393 C4 XJ6 13 XJ6 C5 C13 C 0 1 Y N N N N N -12.121 5.063 43.548 -4.089 -0.349 -0.746 C5 XJ6 14 XJ6 C6 C14 C 0 1 Y N N N N N -12.544 3.857 44.073 -4.567 0.385 0.323 C6 XJ6 15 XJ6 C7 C15 C 0 1 Y N N N N N -12.029 2.663 43.577 -5.876 0.219 0.743 C7 XJ6 16 XJ6 C8 C16 C 0 1 N N N N N N -13.579 4.099 45.139 -3.475 1.289 0.853 C8 XJ6 17 XJ6 C9 C17 C 0 1 N N R N N N -13.319 5.558 45.536 -2.160 0.716 0.279 C9 XJ6 18 XJ6 N11 N1 N 0 1 N N N N N N -14.508 6.209 46.082 -1.217 1.792 -0.035 N11 XJ6 19 XJ6 C12 C18 C 0 1 Y N N N N N -14.421 7.328 46.814 0.138 1.536 -0.059 C12 XJ6 20 XJ6 N13 N2 N 0 1 Y N N N N N -15.569 7.856 47.269 0.976 2.524 -0.345 N13 XJ6 21 XJ6 C14 C19 C 0 1 Y N N N N N -15.441 8.973 47.992 2.279 2.320 -0.377 C14 XJ6 22 XJ6 N17 N3 N 0 1 Y N N N N N -13.185 7.799 47.031 0.566 0.305 0.191 N17 XJ6 23 XJ6 O19 O1 O 0 1 N N N N N N -15.112 11.682 48.749 5.012 1.674 -0.278 O19 XJ6 24 XJ6 N20 N4 N 0 1 N N N N N N -13.037 11.293 49.551 4.670 -0.506 -0.027 N20 XJ6 25 XJ6 O25 O2 O 0 1 N N N N N N -14.314 13.974 50.674 7.945 -1.061 0.561 O25 XJ6 26 XJ6 H33 H1 H 0 1 N N N N N N -12.122 7.027 44.451 -2.054 -0.888 -1.188 H33 XJ6 27 XJ6 H34 H2 H 0 1 N N N N N N -13.659 6.579 43.636 -2.569 0.688 -1.859 H34 XJ6 28 XJ6 H37 H3 H 0 1 N N N N N N -12.136 9.336 47.956 2.194 -0.987 0.377 H37 XJ6 29 XJ6 H38 H4 H 0 1 N N N N N N -11.318 9.993 49.881 3.200 -1.960 -0.657 H38 XJ6 30 XJ6 H39 H5 H 0 1 N N N N N N -11.166 11.072 48.453 3.775 -2.150 1.056 H39 XJ6 31 XJ6 H40 H6 H 0 1 N N N N N N -11.007 11.884 51.412 5.684 -3.309 0.047 H40 XJ6 32 XJ6 H41 H7 H 0 1 N N N N N N -10.604 12.901 49.987 5.421 -2.487 -1.554 H41 XJ6 33 XJ6 H42 H8 H 0 1 N N N N N N -12.525 14.722 49.745 7.496 -0.933 -1.521 H42 XJ6 34 XJ6 H43 H9 H 0 1 N N N N N N -13.627 13.830 48.642 7.215 0.594 -0.571 H43 XJ6 35 XJ6 H45 H10 H 0 1 N N N N N N -14.294 12.174 51.850 6.614 -0.226 2.004 H45 XJ6 36 XJ6 H44 H11 H 0 1 N N N N N N -13.060 13.392 52.320 6.679 -2.043 1.972 H44 XJ6 37 XJ6 H27 H12 H 0 1 N N N N N N -9.871 3.913 41.294 -6.871 -2.115 -1.481 H27 XJ6 38 XJ6 H28 H13 H 0 1 N N N N N N -10.828 6.023 42.139 -4.546 -1.822 -2.228 H28 XJ6 39 XJ6 H29 H14 H 0 1 N N N N N N -12.372 1.715 43.964 -6.251 0.792 1.578 H29 XJ6 40 XJ6 H31 H15 H 0 1 N N N N N N -14.596 3.972 44.740 -3.626 2.310 0.503 H31 XJ6 41 XJ6 H30 H16 H 0 1 N N N N N N -13.433 3.423 45.994 -3.456 1.261 1.943 H30 XJ6 42 XJ6 H32 H17 H 0 1 N N N N N N -12.508 5.583 46.279 -1.716 -0.001 0.969 H32 XJ6 43 XJ6 H35 H18 H 0 1 N N N N N N -15.093 6.428 45.301 -1.545 2.684 -0.226 H35 XJ6 44 XJ6 H36 H19 H 0 1 N N N N N N -16.338 9.445 48.364 2.956 3.131 -0.603 H36 XJ6 45 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal XJ6 CL1 C2 SING N N 1 XJ6 C2 C3 DOUB Y N 2 XJ6 C2 C7 SING Y N 3 XJ6 C3 C4 SING Y N 4 XJ6 C4 C5 DOUB Y N 5 XJ6 C5 C6 SING Y N 6 XJ6 C5 C10 SING N N 7 XJ6 C6 C7 DOUB Y N 8 XJ6 C6 C8 SING N N 9 XJ6 C8 C9 SING N N 10 XJ6 C9 C10 SING N N 11 XJ6 C9 N11 SING N N 12 XJ6 N11 C12 SING N N 13 XJ6 C12 N13 DOUB Y N 14 XJ6 C12 N17 SING Y N 15 XJ6 N13 C14 SING Y N 16 XJ6 C14 C15 DOUB Y N 17 XJ6 C15 C16 SING Y N 18 XJ6 C15 C18 SING N N 19 XJ6 C16 N17 DOUB Y N 20 XJ6 C18 O19 DOUB N N 21 XJ6 C18 N20 SING N N 22 XJ6 N20 C21 SING N N 23 XJ6 N20 C23 SING N N 24 XJ6 C21 C22 SING N N 25 XJ6 C22 C23 SING N N 26 XJ6 C23 C24 SING N N 27 XJ6 C23 C26 SING N N 28 XJ6 C24 O25 SING N N 29 XJ6 O25 C26 SING N N 30 XJ6 C10 H33 SING N N 31 XJ6 C10 H34 SING N N 32 XJ6 C16 H37 SING N N 33 XJ6 C21 H38 SING N N 34 XJ6 C21 H39 SING N N 35 XJ6 C22 H40 SING N N 36 XJ6 C22 H41 SING N N 37 XJ6 C24 H42 SING N N 38 XJ6 C24 H43 SING N N 39 XJ6 C26 H45 SING N N 40 XJ6 C26 H44 SING N N 41 XJ6 C3 H27 SING N N 42 XJ6 C4 H28 SING N N 43 XJ6 C7 H29 SING N N 44 XJ6 C8 H31 SING N N 45 XJ6 C8 H30 SING N N 46 XJ6 C9 H32 SING N N 47 XJ6 N11 H35 SING N N 48 XJ6 C14 H36 SING N N 49 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor XJ6 SMILES ACDLabs 12.01 "O=C(N1CCC21COC2)c1cnc(NC2Cc3ccc(Cl)cc3C2)nc1" XJ6 InChI InChI 1.06 "InChI=1S/C19H19ClN4O2/c20-15-2-1-12-6-16(7-13(12)5-15)23-18-21-8-14(9-22-18)17(25)24-4-3-19(24)10-26-11-19/h1-2,5,8-9,16H,3-4,6-7,10-11H2,(H,21,22,23)/t16-/m0/s1" XJ6 InChIKey InChI 1.06 HAPPEVDZYHPJET-INIZCTEOSA-N XJ6 SMILES_CANONICAL CACTVS 3.385 "Clc1ccc2C[C@H](Cc2c1)Nc3ncc(cn3)C(=O)N4CCC45COC5" XJ6 SMILES CACTVS 3.385 "Clc1ccc2C[CH](Cc2c1)Nc3ncc(cn3)C(=O)N4CCC45COC5" XJ6 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc2c(cc1Cl)C[C@@H](C2)Nc3ncc(cn3)C(=O)N4CCC45COC5" XJ6 SMILES "OpenEye OEToolkits" 2.0.7 "c1cc2c(cc1Cl)CC(C2)Nc3ncc(cn3)C(=O)N4CCC45COC5" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier XJ6 "SYSTEMATIC NAME" ACDLabs 12.01 "(2-{[(2S)-5-chloro-2,3-dihydro-1H-inden-2-yl]amino}pyrimidin-5-yl)(6-oxa-1-azaspiro[3.3]heptan-1-yl)methanone" XJ6 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "[2-[[(2~{R})-5-chloranyl-2,3-dihydro-1~{H}-inden-2-yl]amino]pyrimidin-5-yl]-(6-oxa-1-azaspiro[3.3]heptan-1-yl)methanone" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site XJ6 "Create component" 2023-06-07 RCSB XJ6 "Initial release" 2024-12-18 RCSB #