data_XJA # _chem_comp.id XJA _chem_comp.name "(2S)-1-(butanoyloxy)-3-{[(R)-hydroxy{[(1S,2R,3R,4R,5R,6S)-2,3,4,5,6-pentahydroxycyclohexyl]oxy}phosphoryl]oxy}propan-2-yl tridecanoate" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C26 H49 O13 P" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-12-17 _chem_comp.pdbx_modified_date 2021-09-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 600.633 _chem_comp.one_letter_code ? _chem_comp.three_letter_code XJA _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7L2I _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal XJA C10 C1 C 0 1 N N N 108.164 139.785 117.653 -4.639 -0.000 4.791 C10 XJA 1 XJA O11 O1 O 0 1 N N N 105.196 136.315 127.944 -4.152 2.711 -2.745 O11 XJA 2 XJA C16 C2 C 0 1 N N N 107.268 135.945 115.609 7.300 0.336 -0.273 C16 XJA 3 XJA C17 C3 C 0 1 N N N 107.132 135.600 114.133 8.704 -0.233 -0.057 C17 XJA 4 XJA C18 C4 C 0 1 N N N 106.946 136.847 113.277 9.723 0.908 -0.062 C18 XJA 5 XJA C19 C5 C 0 1 N N N 106.937 136.475 111.802 11.127 0.340 0.154 C19 XJA 6 XJA C20 C6 C 0 1 N N N 106.875 137.669 110.858 12.146 1.481 0.149 C20 XJA 7 XJA C21 C7 C 0 1 N N N 106.952 137.210 109.407 13.549 0.912 0.366 C21 XJA 8 XJA C C8 C 0 1 N N N 103.481 137.820 129.508 -5.646 3.286 0.654 C XJA 9 XJA O O2 O 0 1 N N N 104.331 137.028 130.294 -5.099 3.816 1.863 O XJA 10 XJA C1 C9 C 0 1 N N R 102.400 136.916 128.921 -6.129 1.854 0.898 C1 XJA 11 XJA C11 C10 C 0 1 N N N 104.355 133.652 119.892 1.451 -1.933 -0.690 C11 XJA 12 XJA C12 C11 C 0 1 N N N 105.328 133.154 118.828 2.454 -0.809 -0.695 C12 XJA 13 XJA C13 C12 C 0 1 N N N 105.863 134.278 117.949 3.858 -1.378 -0.479 C13 XJA 14 XJA C14 C13 C 0 1 N N N 106.841 133.780 116.892 4.877 -0.237 -0.484 C14 XJA 15 XJA C15 C14 C 0 1 N N N 107.863 134.826 116.458 6.281 -0.805 -0.268 C15 XJA 16 XJA C2 C15 C 0 1 N N S 102.128 137.224 127.446 -6.715 1.286 -0.396 C2 XJA 17 XJA C22 C16 C 0 1 N N N 106.503 138.286 108.432 14.568 2.053 0.360 C22 XJA 18 XJA C23 C17 C 0 1 N N N 107.371 139.534 108.529 15.972 1.485 0.577 C23 XJA 19 XJA C24 C18 C 0 1 N N R 104.651 137.458 127.336 -5.157 2.714 -1.729 C24 XJA 20 XJA C25 C19 C 0 1 N N R 104.327 138.477 128.418 -4.571 3.282 -0.434 C25 XJA 21 XJA C3 C20 C 0 1 N N N 103.381 137.048 126.593 -5.639 1.283 -1.484 C3 XJA 22 XJA C4 C21 C 0 1 N N N 104.613 134.118 122.949 -1.967 -2.500 -1.743 C4 XJA 23 XJA C5 C22 C 0 1 N N S 105.461 134.627 121.793 -0.764 -2.800 -0.847 C5 XJA 24 XJA C6 C23 C 0 1 N N N 106.062 135.994 122.118 -1.242 -3.049 0.585 C6 XJA 25 XJA C7 C24 C 0 1 N N N 107.005 137.623 120.628 -2.529 -1.977 2.280 C7 XJA 26 XJA C8 C25 C 0 1 N N N 107.699 137.946 119.323 -3.357 -0.837 2.816 C8 XJA 27 XJA C9 C26 C 0 1 N N N 107.509 139.413 118.979 -3.798 -1.157 4.246 C9 XJA 28 XJA O1 O3 O 0 1 N N N 101.231 137.131 129.652 -7.134 1.857 1.914 O1 XJA 29 XJA O10 O4 O 0 1 N N N 103.332 133.096 120.050 1.820 -3.072 -0.530 O10 XJA 30 XJA O12 O5 O 0 1 N N N 105.529 138.962 128.974 -3.470 2.474 -0.014 O12 XJA 31 XJA O2 O6 O 0 1 N N N 101.166 136.350 126.924 -7.166 -0.051 -0.168 O2 XJA 32 XJA O3 O7 O 0 1 N N N 103.456 135.699 126.277 -4.539 0.474 -1.064 O3 XJA 33 XJA O4 O8 O 0 1 N N N 102.344 134.045 124.740 -5.198 -1.947 -1.850 O4 XJA 34 XJA O5 O9 O 0 1 N N N 102.344 136.413 124.080 -3.755 -0.448 -3.279 O5 XJA 35 XJA O6 O10 O 0 1 N N N 104.551 135.086 123.945 -2.710 -1.410 -1.193 O6 XJA 36 XJA O7 O11 O 0 1 N N N 106.955 136.307 121.086 -2.031 -1.916 1.035 O7 XJA 37 XJA O8 O12 O 0 1 N N N 106.531 138.509 121.233 -2.314 -2.944 2.970 O8 XJA 38 XJA O9 O13 O 0 1 N N N 104.643 134.777 120.666 0.146 -1.669 -0.863 O9 XJA 39 XJA P P1 P 0 1 N N N 103.134 135.309 124.732 -4.044 -0.824 -1.877 P XJA 40 XJA H1 H1 H 0 1 N N N 107.999 140.853 117.449 -4.045 0.914 4.789 H1 XJA 41 XJA H2 H2 H 0 1 N N N 109.244 139.585 117.709 -5.518 0.138 4.161 H2 XJA 42 XJA H3 H3 H 0 1 N N N 107.721 139.185 116.844 -4.953 -0.228 5.809 H3 XJA 43 XJA H4 H4 H 0 1 N N N 105.988 136.552 128.412 -3.800 3.587 -2.952 H4 XJA 44 XJA H5 H5 H 0 1 N N N 107.917 136.829 115.699 7.065 1.037 0.528 H5 XJA 45 XJA H6 H6 H 0 1 N N N 106.268 136.182 116.002 7.261 0.853 -1.232 H6 XJA 46 XJA H7 H7 H 0 1 N N N 106.260 134.943 113.999 8.743 -0.750 0.902 H7 XJA 47 XJA H8 H8 H 0 1 N N N 108.041 135.075 113.805 8.939 -0.934 -0.858 H8 XJA 48 XJA H9 H9 H 0 1 N N N 107.772 137.547 113.470 9.684 1.426 -1.020 H9 XJA 49 XJA H10 H10 H 0 1 N N N 105.991 137.327 113.537 9.487 1.609 0.739 H10 XJA 50 XJA H11 H11 H 0 1 N N N 106.060 135.839 111.612 11.165 -0.178 1.113 H11 XJA 51 XJA H12 H12 H 0 1 N N N 107.855 135.909 111.583 11.362 -0.361 -0.646 H12 XJA 52 XJA H13 H13 H 0 1 N N N 107.719 138.341 111.070 12.107 1.998 -0.809 H13 XJA 53 XJA H14 H14 H 0 1 N N N 105.929 138.207 111.017 11.910 2.182 0.950 H14 XJA 54 XJA H15 H15 H 0 1 N N N 106.307 136.328 109.281 13.588 0.395 1.324 H15 XJA 55 XJA H16 H16 H 0 1 N N N 107.993 136.938 109.178 13.785 0.211 -0.435 H16 XJA 56 XJA H17 H17 H 0 1 N N N 103.004 138.604 130.115 -6.486 3.902 0.333 H17 XJA 57 XJA H18 H18 H 0 1 N N N 103.827 136.608 130.981 -4.773 4.723 1.782 H18 XJA 58 XJA H19 H19 H 0 1 N N N 102.726 135.869 129.010 -5.290 1.237 1.219 H19 XJA 59 XJA H20 H20 H 0 1 N N N 104.808 132.425 118.189 2.416 -0.292 -1.654 H20 XJA 60 XJA H21 H21 H 0 1 N N N 106.176 132.664 119.328 2.219 -0.108 0.106 H21 XJA 61 XJA H22 H22 H 0 1 N N N 106.378 135.010 118.588 3.897 -1.895 0.480 H22 XJA 62 XJA H23 H23 H 0 1 N N N 105.015 134.764 117.444 4.094 -2.079 -1.280 H23 XJA 63 XJA H24 H24 H 0 1 N N N 106.267 133.468 116.007 4.839 0.281 -1.443 H24 XJA 64 XJA H25 H25 H 0 1 N N N 107.383 132.914 117.301 4.642 0.464 0.317 H25 XJA 65 XJA H26 H26 H 0 1 N N N 108.647 134.324 115.872 6.516 -1.506 -1.069 H26 XJA 66 XJA H27 H27 H 0 1 N N N 108.308 135.272 117.359 6.320 -1.323 0.691 H27 XJA 67 XJA H28 H28 H 0 1 N N N 101.787 138.266 127.361 -7.554 1.903 -0.717 H28 XJA 68 XJA H29 H29 H 0 1 N N N 105.461 138.558 108.657 14.530 2.571 -0.598 H29 XJA 69 XJA H30 H30 H 0 1 N N N 106.565 137.888 107.409 14.333 2.754 1.161 H30 XJA 70 XJA H31 H31 H 0 1 N N N 107.014 140.286 107.810 16.011 0.967 1.535 H31 XJA 71 XJA H32 H32 H 0 1 N N N 107.311 139.944 109.548 16.208 0.784 -0.224 H32 XJA 72 XJA H33 H33 H 0 1 N N N 108.415 139.273 108.300 16.698 2.298 0.573 H33 XJA 73 XJA H34 H34 H 0 1 N N N 105.361 137.900 126.622 -5.996 3.331 -2.049 H34 XJA 74 XJA H35 H35 H 0 1 N N N 103.751 139.301 127.971 -4.227 4.302 -0.608 H35 XJA 75 XJA H36 H36 H 0 1 N N N 103.285 137.661 125.684 -6.057 0.878 -2.406 H36 XJA 76 XJA H37 H37 H 0 1 N N N 103.597 133.898 122.589 -1.620 -2.236 -2.741 H37 XJA 77 XJA H38 H38 H 0 1 N N N 105.063 133.201 123.357 -2.605 -3.382 -1.801 H38 XJA 78 XJA H39 H39 H 0 1 N N N 106.274 133.912 121.597 -0.248 -3.687 -1.217 H39 XJA 79 XJA H40 H40 H 0 1 N N N 106.596 135.953 123.079 -1.854 -3.951 0.612 H40 XJA 80 XJA H41 H41 H 0 1 N N N 105.267 136.752 122.172 -0.380 -3.175 1.240 H41 XJA 81 XJA H42 H42 H 0 1 N N N 107.272 137.326 118.521 -2.763 0.076 2.815 H42 XJA 82 XJA H43 H43 H 0 1 N N N 108.774 137.731 119.420 -4.237 -0.700 2.187 H43 XJA 83 XJA H44 H44 H 0 1 N N N 107.954 140.024 119.778 -2.919 -1.294 4.875 H44 XJA 84 XJA H45 H45 H 0 1 N N N 106.432 139.624 118.913 -4.393 -2.070 4.247 H45 XJA 85 XJA H46 H46 H 0 1 N N N 101.391 136.942 130.569 -6.832 2.206 2.765 H46 XJA 86 XJA H47 H47 H 0 1 N N N 105.331 139.599 129.650 -3.049 2.776 0.802 H47 XJA 87 XJA H48 H48 H 0 1 N N N 100.363 136.425 127.427 -7.850 -0.124 0.511 H48 XJA 88 XJA H49 H49 H 0 1 N N N 101.500 134.196 124.330 -5.439 -2.241 -0.961 H49 XJA 89 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal XJA C22 C23 SING N N 1 XJA C22 C21 SING N N 2 XJA C21 C20 SING N N 3 XJA C20 C19 SING N N 4 XJA C19 C18 SING N N 5 XJA C18 C17 SING N N 6 XJA C17 C16 SING N N 7 XJA C16 C15 SING N N 8 XJA C15 C14 SING N N 9 XJA C14 C13 SING N N 10 XJA C10 C9 SING N N 11 XJA C13 C12 SING N N 12 XJA C12 C11 SING N N 13 XJA C9 C8 SING N N 14 XJA C8 C7 SING N N 15 XJA C11 O10 DOUB N N 16 XJA C11 O9 SING N N 17 XJA C7 O7 SING N N 18 XJA C7 O8 DOUB N N 19 XJA O9 C5 SING N N 20 XJA O7 C6 SING N N 21 XJA C5 C6 SING N N 22 XJA C5 C4 SING N N 23 XJA C4 O6 SING N N 24 XJA O6 P SING N N 25 XJA O5 P DOUB N N 26 XJA P O4 SING N N 27 XJA P O3 SING N N 28 XJA O3 C3 SING N N 29 XJA C3 C24 SING N N 30 XJA C3 C2 SING N N 31 XJA O2 C2 SING N N 32 XJA C24 O11 SING N N 33 XJA C24 C25 SING N N 34 XJA C2 C1 SING N N 35 XJA C25 O12 SING N N 36 XJA C25 C SING N N 37 XJA C1 C SING N N 38 XJA C1 O1 SING N N 39 XJA C O SING N N 40 XJA C10 H1 SING N N 41 XJA C10 H2 SING N N 42 XJA C10 H3 SING N N 43 XJA O11 H4 SING N N 44 XJA C16 H5 SING N N 45 XJA C16 H6 SING N N 46 XJA C17 H7 SING N N 47 XJA C17 H8 SING N N 48 XJA C18 H9 SING N N 49 XJA C18 H10 SING N N 50 XJA C19 H11 SING N N 51 XJA C19 H12 SING N N 52 XJA C20 H13 SING N N 53 XJA C20 H14 SING N N 54 XJA C21 H15 SING N N 55 XJA C21 H16 SING N N 56 XJA C H17 SING N N 57 XJA O H18 SING N N 58 XJA C1 H19 SING N N 59 XJA C12 H20 SING N N 60 XJA C12 H21 SING N N 61 XJA C13 H22 SING N N 62 XJA C13 H23 SING N N 63 XJA C14 H24 SING N N 64 XJA C14 H25 SING N N 65 XJA C15 H26 SING N N 66 XJA C15 H27 SING N N 67 XJA C2 H28 SING N N 68 XJA C22 H29 SING N N 69 XJA C22 H30 SING N N 70 XJA C23 H31 SING N N 71 XJA C23 H32 SING N N 72 XJA C23 H33 SING N N 73 XJA C24 H34 SING N N 74 XJA C25 H35 SING N N 75 XJA C3 H36 SING N N 76 XJA C4 H37 SING N N 77 XJA C4 H38 SING N N 78 XJA C5 H39 SING N N 79 XJA C6 H40 SING N N 80 XJA C6 H41 SING N N 81 XJA C8 H42 SING N N 82 XJA C8 H43 SING N N 83 XJA C9 H44 SING N N 84 XJA C9 H45 SING N N 85 XJA O1 H46 SING N N 86 XJA O12 H47 SING N N 87 XJA O2 H48 SING N N 88 XJA O4 H49 SING N N 89 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor XJA SMILES ACDLabs 12.01 "CCCC(OCC(COP(OC1C(C(C(O)C(C1O)O)O)O)(O)=O)OC(=O)CCCCCCCCCCCC)=O" XJA InChI InChI 1.03 "InChI=1S/C26H49O13P/c1-3-5-6-7-8-9-10-11-12-13-15-20(28)38-18(16-36-19(27)14-4-2)17-37-40(34,35)39-26-24(32)22(30)21(29)23(31)25(26)33/h18,21-26,29-33H,3-17H2,1-2H3,(H,34,35)/t18-,21-,22+,23+,24+,25-,26+/m0/s1" XJA InChIKey InChI 1.03 PJDJYKJPFGJDMA-STSOKTRESA-N XJA SMILES_CANONICAL CACTVS 3.385 "CCCCCCCCCCCCC(=O)O[C@@H](COC(=O)CCC)CO[P](O)(=O)O[C@H]1[C@@H](O)[C@H](O)[C@@H](O)[C@@H](O)[C@H]1O" XJA SMILES CACTVS 3.385 "CCCCCCCCCCCCC(=O)O[CH](COC(=O)CCC)CO[P](O)(=O)O[CH]1[CH](O)[CH](O)[CH](O)[CH](O)[CH]1O" XJA SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCCCCCCCCCCCC(=O)O[C@@H](COC(=O)CCC)COP(=O)(O)OC1[C@@H]([C@@H](C([C@H]([C@@H]1O)O)O)O)O" XJA SMILES "OpenEye OEToolkits" 2.0.7 "CCCCCCCCCCCCC(=O)OC(COC(=O)CCC)COP(=O)(O)OC1C(C(C(C(C1O)O)O)O)O" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier XJA "SYSTEMATIC NAME" ACDLabs 12.01 "(2S)-1-(butanoyloxy)-3-{[(R)-hydroxy{[(1S,2R,3R,4R,5R,6S)-2,3,4,5,6-pentahydroxycyclohexyl]oxy}phosphoryl]oxy}propan-2-yl tridecanoate" XJA "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "[(2~{S})-1-butanoyloxy-3-[oxidanyl-[(2~{S},3~{R},5~{R},6~{R})-2,3,4,5,6-pentakis(oxidanyl)cyclohexyl]oxy-phosphoryl]oxy-propan-2-yl] tridecanoate" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site XJA "Create component" 2020-12-17 RCSB XJA "Initial release" 2021-09-22 RCSB ##