data_XJB # _chem_comp.id XJB _chem_comp.name "3-[2-(3-{[2,4-diamino-6-(4-methoxyphenyl)pyrimidin-5-yl]oxy}propoxy)phenyl]propanoic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C23 H26 N4 O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-11-22 _chem_comp.pdbx_modified_date 2023-12-08 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 438.476 _chem_comp.one_letter_code ? _chem_comp.three_letter_code XJB _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8F80 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal XJB C16 C1 C 0 1 Y N N N N N -6.955 5.032 11.166 -4.016 0.255 0.209 C16 XJB 1 XJB C18 C2 C 0 1 Y N N N N N -6.572 6.911 12.771 -2.539 -1.638 0.879 C18 XJB 2 XJB C21 C3 C 0 1 N N N N N N -9.623 10.531 13.289 -2.027 -5.386 -2.032 C21 XJB 3 XJB C20 C4 C 0 1 Y N N N N N -8.098 8.722 12.900 -2.254 -3.539 -0.553 C20 XJB 4 XJB C17 C5 C 0 1 Y N N N N N -7.304 6.357 11.734 -3.400 -1.067 -0.057 C17 XJB 5 XJB C14 C6 C 0 1 N N N N N N -12.347 6.232 15.974 5.184 -1.021 0.703 C14 XJB 6 XJB C13 C7 C 0 1 N N N N N N -10.916 6.056 15.538 5.352 0.496 0.816 C13 XJB 7 XJB C5 C8 C 0 1 N N N N N N -6.653 3.837 15.556 0.413 1.106 0.557 C5 XJB 8 XJB C2 C9 C 0 1 Y N N N N N -6.092 2.827 11.209 -3.889 2.517 0.996 C2 XJB 9 XJB C6 C10 C 0 1 N N N N N N -6.766 5.293 15.936 1.437 1.498 -0.511 C6 XJB 10 XJB C3 C11 C 0 1 Y N N N N N -6.378 4.035 11.896 -3.261 1.289 0.764 C3 XJB 11 XJB C8 C12 C 0 1 Y N N N N N -7.719 7.860 16.650 3.537 2.024 -2.130 C8 XJB 12 XJB C12 C13 C 0 1 Y N N N N N -9.962 7.126 16.055 5.082 1.132 -0.523 C12 XJB 13 XJB C9 C14 C 0 1 Y N N N N N -8.211 9.108 16.981 4.588 2.312 -2.978 C9 XJB 14 XJB C4 C15 C 0 1 N N N N N N -7.084 3.567 14.135 -0.992 1.474 0.075 C4 XJB 15 XJB C1 C16 C 0 1 Y N N N N N -6.886 3.709 9.259 -5.857 1.651 0.152 C1 XJB 16 XJB C10 C17 C 0 1 Y N N N N N -9.552 9.377 16.864 5.884 2.011 -2.602 C10 XJB 17 XJB C11 C18 C 0 1 Y N N N N N -10.414 8.396 16.406 6.131 1.422 -1.375 C11 XJB 18 XJB C15 C19 C 0 1 N N N N N N -13.288 5.115 15.547 5.454 -1.657 2.042 C15 XJB 19 XJB C19 C20 C 0 1 Y N N N N N -6.936 8.116 13.320 -1.968 -2.867 0.628 C19 XJB 20 XJB C22 C21 C 0 1 Y N N N N N -8.905 8.133 11.948 -3.107 -2.971 -1.490 C22 XJB 21 XJB C23 C22 C 0 1 Y N N N N N -8.517 6.935 11.390 -3.681 -1.742 -1.245 C23 XJB 22 XJB C7 C23 C 0 1 Y N N N N N -8.587 6.876 16.205 3.782 1.438 -0.897 C7 XJB 23 XJB N1 N1 N 0 1 N N N N N N -7.175 3.576 7.959 -7.193 1.839 -0.165 N1 XJB 24 XJB N2 N2 N 0 1 Y N N N N N -6.345 2.668 9.911 -5.173 2.655 0.682 N2 XJB 25 XJB N3 N3 N 0 1 N N N N N N -5.528 1.792 11.877 -3.181 3.576 1.546 N3 XJB 26 XJB N4 N4 N 0 1 Y N N N N N -7.175 4.886 9.844 -5.300 0.475 -0.083 N4 XJB 27 XJB O1 O1 O 0 1 N N N N N N -6.120 4.150 13.238 -1.948 1.108 1.071 O1 XJB 28 XJB O2 O2 O 0 1 N N N N N N -8.165 5.623 15.860 2.749 1.155 -0.060 O2 XJB 29 XJB O3 O3 O 0 1 N N N N N N -12.895 4.236 14.757 5.751 -0.969 2.989 O3 XJB 30 XJB O4 O4 O 0 1 N N N N N N -14.435 5.134 16.030 5.365 -2.989 2.182 O4 XJB 31 XJB O5 O5 O 0 1 N N N N N N -8.371 9.902 13.527 -1.689 -4.750 -0.797 O5 XJB 32 XJB H1 H1 H 0 1 N N N N N N -5.706 6.390 13.152 -2.316 -1.116 1.798 H1 XJB 33 XJB H2 H2 H 0 1 N N N N N N -9.681 11.465 13.867 -1.725 -4.749 -2.863 H2 XJB 34 XJB H3 H3 H 0 1 N N N N N N -9.722 10.757 12.217 -1.510 -6.343 -2.101 H3 XJB 35 XJB H4 H4 H 0 1 N N N N N N -10.436 9.858 13.598 -3.103 -5.551 -2.073 H4 XJB 36 XJB H5 H5 H 0 1 N N N N N N -12.365 6.293 17.072 4.166 -1.251 0.390 H5 XJB 37 XJB H6 H6 H 0 1 N N N N N N -12.721 7.175 15.548 5.887 -1.411 -0.033 H6 XJB 38 XJB H7 H7 H 0 1 N N N N N N -10.564 5.078 15.900 4.649 0.886 1.552 H7 XJB 39 XJB H8 H8 H 0 1 N N N N N N -10.887 6.072 14.438 6.371 0.726 1.128 H8 XJB 40 XJB H9 H9 H 0 1 N N N N N N -7.288 3.247 16.234 0.467 0.032 0.735 H9 XJB 41 XJB H10 H10 H 0 1 N N N N N N -5.605 3.525 15.670 0.631 1.640 1.482 H10 XJB 42 XJB H11 H11 H 0 1 N N N N N N -6.393 5.450 16.959 1.219 0.965 -1.436 H11 XJB 43 XJB H12 H12 H 0 1 N N N N N N -6.189 5.915 15.236 1.383 2.572 -0.689 H12 XJB 44 XJB H13 H13 H 0 1 N N N N N N -6.663 7.652 16.738 2.525 2.260 -2.425 H13 XJB 45 XJB H14 H14 H 0 1 N N N N N N -7.538 9.875 17.333 4.398 2.772 -3.937 H14 XJB 46 XJB H15 H15 H 0 1 N N N N N N -8.073 4.015 13.957 -1.046 2.547 -0.104 H15 XJB 47 XJB H16 H16 H 0 1 N N N N N N -7.138 2.482 13.965 -1.210 0.940 -0.851 H16 XJB 48 XJB H17 H17 H 0 1 N N N N N N -9.933 10.352 17.129 6.705 2.236 -3.266 H17 XJB 49 XJB H18 H18 H 0 1 N N N N N N -11.467 8.621 16.318 7.143 1.184 -1.085 H18 XJB 50 XJB H19 H19 H 0 1 N N N N N N -6.318 8.583 14.073 -1.297 -3.308 1.351 H19 XJB 51 XJB H20 H20 H 0 1 N N N N N N -9.828 8.605 11.645 -3.327 -3.496 -2.408 H20 XJB 52 XJB H21 H21 H 0 1 N N N N N N -9.163 6.442 10.679 -4.348 -1.302 -1.972 H21 XJB 53 XJB H22 H22 H 0 1 N N N N N N -7.582 4.424 7.619 -7.706 1.113 -0.553 H22 XJB 54 XJB H23 H23 H 0 1 N N N N N N -6.337 3.381 7.450 -7.615 2.697 0.002 H23 XJB 55 XJB H24 H24 H 0 1 N N N N N N -5.384 1.028 11.248 -2.244 3.468 1.772 H24 XJB 56 XJB H25 H25 H 0 1 N N N N N N -4.650 2.080 12.258 -3.623 4.425 1.704 H25 XJB 57 XJB H26 H26 H 0 1 N N N N N N -14.930 4.392 15.702 5.547 -3.352 3.060 H26 XJB 58 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal XJB N1 C1 SING N N 1 XJB C1 N4 DOUB Y N 2 XJB C1 N2 SING Y N 3 XJB N4 C16 SING Y N 4 XJB N2 C2 DOUB Y N 5 XJB C16 C17 SING N N 6 XJB C16 C3 DOUB Y N 7 XJB C2 N3 SING N N 8 XJB C2 C3 SING Y N 9 XJB C23 C17 DOUB Y N 10 XJB C23 C22 SING Y N 11 XJB C17 C18 SING Y N 12 XJB C3 O1 SING N N 13 XJB C22 C20 DOUB Y N 14 XJB C18 C19 DOUB Y N 15 XJB C20 C19 SING Y N 16 XJB C20 O5 SING N N 17 XJB O1 C4 SING N N 18 XJB C21 O5 SING N N 19 XJB C4 C5 SING N N 20 XJB O3 C15 DOUB N N 21 XJB C13 C14 SING N N 22 XJB C13 C12 SING N N 23 XJB C15 C14 SING N N 24 XJB C15 O4 SING N N 25 XJB C5 C6 SING N N 26 XJB O2 C6 SING N N 27 XJB O2 C7 SING N N 28 XJB C12 C7 DOUB Y N 29 XJB C12 C11 SING Y N 30 XJB C7 C8 SING Y N 31 XJB C11 C10 DOUB Y N 32 XJB C8 C9 DOUB Y N 33 XJB C10 C9 SING Y N 34 XJB C18 H1 SING N N 35 XJB C21 H2 SING N N 36 XJB C21 H3 SING N N 37 XJB C21 H4 SING N N 38 XJB C14 H5 SING N N 39 XJB C14 H6 SING N N 40 XJB C13 H7 SING N N 41 XJB C13 H8 SING N N 42 XJB C5 H9 SING N N 43 XJB C5 H10 SING N N 44 XJB C6 H11 SING N N 45 XJB C6 H12 SING N N 46 XJB C8 H13 SING N N 47 XJB C9 H14 SING N N 48 XJB C4 H15 SING N N 49 XJB C4 H16 SING N N 50 XJB C10 H17 SING N N 51 XJB C11 H18 SING N N 52 XJB C19 H19 SING N N 53 XJB C22 H20 SING N N 54 XJB C23 H21 SING N N 55 XJB N1 H22 SING N N 56 XJB N1 H23 SING N N 57 XJB N3 H24 SING N N 58 XJB N3 H25 SING N N 59 XJB O4 H26 SING N N 60 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor XJB SMILES ACDLabs 12.01 "Nc1nc(c2ccc(OC)cc2)c(OCCCOc2ccccc2CCC(=O)O)c(N)n1" XJB InChI InChI 1.06 "InChI=1S/C23H26N4O5/c1-30-17-10-7-16(8-11-17)20-21(22(24)27-23(25)26-20)32-14-4-13-31-18-6-3-2-5-15(18)9-12-19(28)29/h2-3,5-8,10-11H,4,9,12-14H2,1H3,(H,28,29)(H4,24,25,26,27)" XJB InChIKey InChI 1.06 SKEGPFYLZNDHJX-UHFFFAOYSA-N XJB SMILES_CANONICAL CACTVS 3.385 "COc1ccc(cc1)c2nc(N)nc(N)c2OCCCOc3ccccc3CCC(O)=O" XJB SMILES CACTVS 3.385 "COc1ccc(cc1)c2nc(N)nc(N)c2OCCCOc3ccccc3CCC(O)=O" XJB SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "COc1ccc(cc1)c2c(c(nc(n2)N)N)OCCCOc3ccccc3CCC(=O)O" XJB SMILES "OpenEye OEToolkits" 2.0.7 "COc1ccc(cc1)c2c(c(nc(n2)N)N)OCCCOc3ccccc3CCC(=O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier XJB "SYSTEMATIC NAME" ACDLabs 12.01 "3-[2-(3-{[2,4-diamino-6-(4-methoxyphenyl)pyrimidin-5-yl]oxy}propoxy)phenyl]propanoic acid" XJB "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "3-[2-[3-[2,4-bis(azanyl)-6-(4-methoxyphenyl)pyrimidin-5-yl]oxypropoxy]phenyl]propanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site XJB "Create component" 2022-11-22 RCSB XJB "Initial release" 2023-12-13 RCSB #