data_XJN # _chem_comp.id XJN _chem_comp.name "3-(2-{3-[(2,4-diamino-6-pentylpyrimidin-5-yl)oxy]propoxy}phenyl)propanoic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C21 H30 N4 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-11-23 _chem_comp.pdbx_modified_date 2023-12-08 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 402.487 _chem_comp.one_letter_code ? _chem_comp.three_letter_code XJN _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8F81 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal XJN C1 C1 C 0 1 Y N N N N N -6.797 1.938 9.279 -5.825 1.835 -0.353 C1 XJN 1 XJN C3 C2 C 0 1 Y N N N N N -6.260 2.270 11.876 -3.321 0.903 -0.604 C3 XJN 2 XJN N4 N1 N 0 1 Y N N N N N -7.008 3.154 9.822 -5.437 0.807 0.384 N4 XJN 3 XJN O2 O1 O 0 1 N N N N N N -8.174 3.938 15.786 2.628 0.358 0.475 O2 XJN 4 XJN O3 O2 O 0 1 N N N N N N -14.472 3.309 15.973 5.747 -0.944 -3.729 O3 XJN 5 XJN C4 C3 C 0 1 N N N N N N -6.892 1.760 14.161 -1.056 1.005 0.118 C4 XJN 6 XJN N3 N2 N 0 1 N N N N N N -5.565 -0.066 11.906 -2.910 2.605 -2.275 N3 XJN 7 XJN C2 C4 C 0 1 Y N N N N N -6.067 1.002 11.224 -3.762 1.990 -1.370 C2 XJN 8 XJN N2 N3 N 0 1 Y N N N N N -6.333 0.857 9.922 -5.009 2.421 -1.216 N2 XJN 9 XJN N1 N4 N 0 1 N N N N N N -7.083 1.788 7.967 -7.122 2.308 -0.223 N1 XJN 10 XJN C8 C5 C 0 1 Y N N N N N -7.792 6.208 16.516 3.517 1.788 2.156 C8 XJN 11 XJN C5 C6 C 0 1 N N N N N N -6.556 2.209 15.565 0.298 0.353 -0.168 C5 XJN 12 XJN C6 C7 C 0 1 N N N N N N -6.758 3.683 15.826 1.363 0.968 0.742 C6 XJN 13 XJN C10 C8 C 0 1 Y N N N N N -9.674 7.663 16.756 5.848 1.678 2.690 C10 XJN 14 XJN C11 C9 C 0 1 Y N N N N N -10.511 6.636 16.353 6.021 0.683 1.746 C11 XJN 15 XJN C12 C10 C 0 1 Y N N N N N -10.021 5.371 16.030 4.946 0.246 0.996 C12 XJN 16 XJN C13 C11 C 0 1 N N N N N N -10.943 4.251 15.578 5.137 -0.834 -0.038 C13 XJN 17 XJN C14 C12 C 0 1 N N N N N N -12.386 4.436 16.008 5.351 -0.194 -1.411 C14 XJN 18 XJN C15 C13 C 0 1 N N N N N N -13.301 3.310 15.549 5.542 -1.274 -2.444 C15 XJN 19 XJN C16 C14 C 0 1 Y N N N N N -6.739 3.318 11.132 -4.207 0.322 0.285 C16 XJN 20 XJN C17 C15 C 0 1 N N N N N N -7.009 4.683 11.704 -3.779 -0.850 1.131 C17 XJN 21 XJN C18 C16 C 0 1 N N N N N N -8.510 4.930 11.830 -4.075 -2.153 0.385 C18 XJN 22 XJN C19 C17 C 0 1 N N N N N N -8.955 6.107 12.688 -3.641 -3.342 1.244 C19 XJN 23 XJN C20 C18 C 0 1 N N N N N N -8.368 7.441 12.286 -3.937 -4.645 0.498 C20 XJN 24 XJN C21 C19 C 0 1 N N N N N N -8.917 8.567 13.137 -3.503 -5.834 1.356 C21 XJN 25 XJN C7 C20 C 0 1 Y N N N N N -8.634 5.182 16.121 3.689 0.794 1.203 C7 XJN 26 XJN C9 C21 C 0 1 Y N N N N N -8.319 7.445 16.835 4.597 2.230 2.895 C9 XJN 27 XJN O1 O3 O 0 1 N N N N N N -6.012 2.424 13.233 -2.050 0.431 -0.732 O1 XJN 28 XJN O4 O4 O 0 1 N N N N N N -12.849 2.445 14.767 5.510 -2.436 -2.117 O4 XJN 29 XJN H1 H1 H 0 1 N N N N N N -14.940 2.565 15.611 5.864 -1.672 -4.356 H1 XJN 30 XJN H2 H2 H 0 1 N N N N N N -7.936 2.020 13.930 -1.327 0.837 1.160 H2 XJN 31 XJN H3 H3 H 0 1 N N N N N N -6.759 0.671 14.080 -0.990 2.076 -0.073 H3 XJN 32 XJN H4 H4 H 0 1 N N N N N N -5.468 -0.843 11.284 -2.001 2.284 -2.382 H4 XJN 33 XJN H5 H5 H 0 1 N N N N N N -4.671 0.171 12.285 -3.223 3.357 -2.802 H5 XJN 34 XJN H6 H6 H 0 1 N N N N N N -7.422 2.653 7.598 -7.731 1.886 0.403 H6 XJN 35 XJN H7 H7 H 0 1 N N N N N N -6.256 1.518 7.474 -7.419 3.061 -0.757 H7 XJN 36 XJN H8 H8 H 0 1 N N N N N N -6.726 6.042 16.575 2.540 2.220 2.316 H8 XJN 37 XJN H9 H9 H 0 1 N N N N N N -7.192 1.648 16.265 0.233 -0.719 0.022 H9 XJN 38 XJN H10 H10 H 0 1 N N N N N N -5.500 1.969 15.757 0.570 0.520 -1.211 H10 XJN 39 XJN H11 H11 H 0 1 N N N N N N -6.356 3.948 16.815 1.092 0.800 1.784 H11 XJN 40 XJN H12 H12 H 0 1 N N N N N N -6.248 4.275 15.052 1.429 2.039 0.551 H12 XJN 41 XJN H13 H13 H 0 1 N N N N N N -10.084 8.630 17.007 6.692 2.024 3.269 H13 XJN 42 XJN H14 H14 H 0 1 N N N N N N -11.573 6.820 16.287 6.999 0.253 1.588 H14 XJN 43 XJN H15 H15 H 0 1 N N N N N N -10.573 3.305 16.001 6.008 -1.436 0.222 H15 XJN 44 XJN H16 H16 H 0 1 N N N N N N -10.912 4.198 14.480 4.252 -1.469 -0.067 H16 XJN 45 XJN H17 H17 H 0 1 N N N N N N -12.757 5.381 15.586 4.481 0.408 -1.671 H17 XJN 46 XJN H18 H18 H 0 1 N N N N N N -12.419 4.487 17.106 6.236 0.442 -1.382 H18 XJN 47 XJN H19 H19 H 0 1 N N N N N N -6.547 4.755 12.700 -2.710 -0.782 1.333 H19 XJN 48 XJN H20 H20 H 0 1 N N N N N N -6.572 5.445 11.041 -4.328 -0.838 2.073 H20 XJN 49 XJN H21 H21 H 0 1 N N N N N N -8.904 5.093 10.816 -5.144 -2.221 0.183 H21 XJN 50 XJN H22 H22 H 0 1 N N N N N N -8.960 4.021 12.257 -3.526 -2.165 -0.557 H22 XJN 51 XJN H23 H23 H 0 1 N N N N N N -10.051 6.182 12.625 -2.572 -3.274 1.445 H23 XJN 52 XJN H24 H24 H 0 1 N N N N N N -8.661 5.903 13.728 -4.190 -3.330 2.185 H24 XJN 53 XJN H25 H25 H 0 1 N N N N N N -7.275 7.402 12.406 -5.006 -4.713 0.296 H25 XJN 54 XJN H26 H26 H 0 1 N N N N N N -8.614 7.637 11.232 -3.388 -4.657 -0.444 H26 XJN 55 XJN H27 H27 H 0 1 N N N N N N -8.470 9.520 12.818 -3.714 -6.762 0.825 H27 XJN 56 XJN H28 H28 H 0 1 N N N N N N -10.009 8.617 13.018 -2.434 -5.766 1.558 H28 XJN 57 XJN H29 H29 H 0 1 N N N N N N -8.671 8.382 14.193 -4.052 -5.822 2.298 H29 XJN 58 XJN H30 H30 H 0 1 N N N N N N -7.663 8.244 17.148 4.464 3.006 3.634 H30 XJN 59 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal XJN N1 C1 SING N N 1 XJN C1 N4 DOUB Y N 2 XJN C1 N2 SING Y N 3 XJN N4 C16 SING Y N 4 XJN N2 C2 DOUB Y N 5 XJN C16 C17 SING N N 6 XJN C16 C3 DOUB Y N 7 XJN C2 C3 SING Y N 8 XJN C2 N3 SING N N 9 XJN C17 C18 SING N N 10 XJN C18 C19 SING N N 11 XJN C3 O1 SING N N 12 XJN C20 C19 SING N N 13 XJN C20 C21 SING N N 14 XJN O1 C4 SING N N 15 XJN C4 C5 SING N N 16 XJN O4 C15 DOUB N N 17 XJN C15 O3 SING N N 18 XJN C15 C14 SING N N 19 XJN C5 C6 SING N N 20 XJN C13 C14 SING N N 21 XJN C13 C12 SING N N 22 XJN O2 C6 SING N N 23 XJN O2 C7 SING N N 24 XJN C12 C7 DOUB Y N 25 XJN C12 C11 SING Y N 26 XJN C7 C8 SING Y N 27 XJN C11 C10 DOUB Y N 28 XJN C8 C9 DOUB Y N 29 XJN C10 C9 SING Y N 30 XJN O3 H1 SING N N 31 XJN C4 H2 SING N N 32 XJN C4 H3 SING N N 33 XJN N3 H4 SING N N 34 XJN N3 H5 SING N N 35 XJN N1 H6 SING N N 36 XJN N1 H7 SING N N 37 XJN C8 H8 SING N N 38 XJN C5 H9 SING N N 39 XJN C5 H10 SING N N 40 XJN C6 H11 SING N N 41 XJN C6 H12 SING N N 42 XJN C10 H13 SING N N 43 XJN C11 H14 SING N N 44 XJN C13 H15 SING N N 45 XJN C13 H16 SING N N 46 XJN C14 H17 SING N N 47 XJN C14 H18 SING N N 48 XJN C17 H19 SING N N 49 XJN C17 H20 SING N N 50 XJN C18 H21 SING N N 51 XJN C18 H22 SING N N 52 XJN C19 H23 SING N N 53 XJN C19 H24 SING N N 54 XJN C20 H25 SING N N 55 XJN C20 H26 SING N N 56 XJN C21 H27 SING N N 57 XJN C21 H28 SING N N 58 XJN C21 H29 SING N N 59 XJN C9 H30 SING N N 60 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor XJN SMILES ACDLabs 12.01 "Nc1nc(CCCCC)c(OCCCOc2ccccc2CCC(=O)O)c(N)n1" XJN InChI InChI 1.06 "InChI=1S/C21H30N4O4/c1-2-3-4-9-16-19(20(22)25-21(23)24-16)29-14-7-13-28-17-10-6-5-8-15(17)11-12-18(26)27/h5-6,8,10H,2-4,7,9,11-14H2,1H3,(H,26,27)(H4,22,23,24,25)" XJN InChIKey InChI 1.06 DLJJCGFJECSXLF-UHFFFAOYSA-N XJN SMILES_CANONICAL CACTVS 3.385 "CCCCCc1nc(N)nc(N)c1OCCCOc2ccccc2CCC(O)=O" XJN SMILES CACTVS 3.385 "CCCCCc1nc(N)nc(N)c1OCCCOc2ccccc2CCC(O)=O" XJN SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCCCCc1c(c(nc(n1)N)N)OCCCOc2ccccc2CCC(=O)O" XJN SMILES "OpenEye OEToolkits" 2.0.7 "CCCCCc1c(c(nc(n1)N)N)OCCCOc2ccccc2CCC(=O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier XJN "SYSTEMATIC NAME" ACDLabs 12.01 "3-(2-{3-[(2,4-diamino-6-pentylpyrimidin-5-yl)oxy]propoxy}phenyl)propanoic acid" XJN "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "3-[2-[3-[2,4-bis(azanyl)-6-pentyl-pyrimidin-5-yl]oxypropoxy]phenyl]propanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site XJN "Create component" 2022-11-23 RCSB XJN "Initial release" 2023-12-13 RCSB #