data_XJT # _chem_comp.id XJT _chem_comp.name "3-{2-[3-({(6M)-2,4-diamino-6-[3-(trifluoromethyl)phenyl]pyrimidin-5-yl}oxy)propoxy]phenyl}propanoic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C23 H23 F3 N4 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-11-23 _chem_comp.pdbx_modified_date 2023-12-08 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 476.448 _chem_comp.one_letter_code ? _chem_comp.three_letter_code XJT _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8F82 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal XJT N1 N1 N 0 1 N N N N N N -1.397 -7.535 12.787 5.935 -3.574 1.095 N1 XJT 1 XJT C2 C1 C 0 1 Y N N N N N -0.397 -10.905 12.676 2.424 -3.626 0.474 C2 XJT 2 XJT C3 C2 C 0 1 Y N N N N N -0.682 -11.332 14.011 2.220 -2.344 -0.047 C3 XJT 3 XJT C4 C3 C 0 1 N N N N N N -1.253 -13.675 13.853 0.174 -1.296 0.564 C4 XJT 4 XJT C6 C4 C 0 1 N N N N N N -1.041 -15.095 15.955 -2.038 -0.225 1.016 C6 XJT 5 XJT C7 C5 C 0 1 Y N N N N N -2.941 -15.163 17.417 -4.188 0.758 1.263 C7 XJT 6 XJT C8 C6 C 0 1 Y N N N N N -2.114 -15.293 18.521 -3.854 1.020 2.584 C8 XJT 7 XJT C9 C7 C 0 1 Y N N N N N -2.662 -15.333 19.790 -4.759 1.658 3.410 C9 XJT 8 XJT C10 C8 C 0 1 Y N N N N N -4.022 -15.235 19.957 -5.997 2.034 2.922 C10 XJT 9 XJT C11 C9 C 0 1 Y N N N N N -4.843 -15.091 18.852 -6.332 1.773 1.606 C11 XJT 10 XJT C12 C10 C 0 1 Y N N N N N -4.332 -15.053 17.556 -5.431 1.137 0.776 C12 XJT 11 XJT C13 C11 C 0 1 N N N N N N -5.226 -14.884 16.341 -5.796 0.853 -0.659 C13 XJT 12 XJT C15 C12 C 0 1 N N N N N N -7.560 -15.098 15.348 -6.715 -0.854 -2.206 C15 XJT 13 XJT C19 C13 C 0 1 Y N N N N N -1.480 -9.781 18.566 3.800 2.187 -0.742 C19 XJT 14 XJT C20 C14 C 0 1 N N N N N N -1.024 -8.713 19.503 4.646 3.317 -0.214 C20 XJT 15 XJT C23 C15 C 0 1 Y N N N N N -2.310 -11.699 16.770 2.235 0.119 -1.724 C23 XJT 16 XJT C1 C16 C 0 1 Y N N N N N -1.146 -8.800 13.172 4.672 -3.155 0.707 C1 XJT 17 XJT C14 C17 C 0 1 N N N N N N -6.672 -15.286 16.570 -6.349 -0.570 -0.772 C14 XJT 18 XJT C16 C18 C 0 1 Y N N N N N -1.187 -10.381 14.884 3.322 -1.496 -0.167 C16 XJT 19 XJT C17 C19 C 0 1 Y N N N N N -1.551 -10.627 16.312 3.162 -0.127 -0.712 C17 XJT 20 XJT C18 C20 C 0 1 Y N N N N N -1.182 -9.670 17.217 3.949 0.916 -0.227 C18 XJT 21 XJT C21 C21 C 0 1 Y N N N N N -2.235 -10.853 19.022 2.871 2.428 -1.739 C21 XJT 22 XJT C22 C22 C 0 1 Y N N N N N -2.648 -11.815 18.114 2.091 1.396 -2.228 C22 XJT 23 XJT C5 C23 C 0 1 N N N N N N -0.794 -14.971 14.472 -1.175 -0.909 -0.046 C5 XJT 24 XJT F1 F1 F 0 1 N N N N N N -1.993 -7.870 19.827 4.312 4.501 -0.881 F1 XJT 25 XJT F2 F2 F 0 1 N N N N N N -0.052 -7.950 18.998 4.413 3.473 1.156 F2 XJT 26 XJT F3 F3 F 0 1 N N N N N N -0.538 -9.174 20.649 5.998 3.027 -0.428 F3 XJT 27 XJT N2 N2 N 0 1 Y N N N N N -0.626 -9.652 12.271 3.650 -3.989 0.835 N2 XJT 28 XJT N3 N3 N 0 1 N N N N N N 0.160 -11.760 11.776 1.359 -4.504 0.618 N3 XJT 29 XJT N4 N4 N 0 1 Y N N N N N -1.423 -9.129 14.449 4.522 -1.936 0.219 N4 XJT 30 XJT O1 O1 O 0 1 N N N N N N -0.453 -12.623 14.424 0.980 -1.934 -0.428 O1 XJT 31 XJT O2 O2 O 0 1 N N N N N N -2.467 -15.106 16.136 -3.297 0.136 0.446 O2 XJT 32 XJT O3 O3 O 0 1 N N N N N N -8.670 -15.660 15.354 -7.223 -2.049 -2.545 O3 XJT 33 XJT O4 O4 O 0 1 N N N N N N -7.156 -14.394 14.399 -6.551 -0.005 -3.051 O4 XJT 34 XJT H1 H1 H 0 1 N N N N N N -1.140 -7.421 11.827 6.693 -2.975 1.008 H1 XJT 35 XJT H2 H2 H 0 1 N N N N N N -2.372 -7.341 12.896 6.060 -4.464 1.459 H2 XJT 36 XJT H3 H3 H 0 1 N N N N N N -2.316 -13.505 14.079 0.681 -0.400 0.922 H3 XJT 37 XJT H4 H4 H 0 1 N N N N N N -1.111 -13.707 12.763 0.013 -1.980 1.397 H4 XJT 38 XJT H5 H5 H 0 1 N N N N N N -0.603 -16.030 16.336 -2.198 -0.909 1.849 H5 XJT 39 XJT H6 H6 H 0 1 N N N N N N -0.598 -14.240 16.486 -1.531 0.671 1.375 H6 XJT 40 XJT H7 H7 H 0 1 N N N N N N -1.044 -15.363 18.391 -2.888 0.726 2.966 H7 XJT 41 XJT H8 H8 H 0 1 N N N N N N -2.020 -15.441 20.651 -4.500 1.862 4.439 H8 XJT 42 XJT H9 H9 H 0 1 N N N N N N -4.450 -15.270 20.948 -6.703 2.532 3.570 H9 XJT 43 XJT H10 H10 H 0 1 N N N N N N -5.910 -15.006 18.998 -7.300 2.068 1.227 H10 XJT 44 XJT H11 H11 H 0 1 N N N N N N -4.821 -15.502 15.526 -6.554 1.564 -0.988 H11 XJT 45 XJT H12 H12 H 0 1 N N N N N N -5.206 -13.825 16.043 -4.910 0.949 -1.286 H12 XJT 46 XJT H13 H13 H 0 1 N N N N N N -2.642 -12.453 16.071 1.626 -0.686 -2.107 H13 XJT 47 XJT H14 H14 H 0 1 N N N N N N -7.077 -14.675 17.391 -5.591 -1.281 -0.443 H14 XJT 48 XJT H15 H15 H 0 1 N N N N N N -6.696 -16.348 16.857 -7.235 -0.666 -0.145 H15 XJT 49 XJT H16 H16 H 0 1 N N N N N N -0.642 -8.802 16.870 4.675 0.730 0.551 H16 XJT 50 XJT H17 H17 H 0 1 N N N N N N -2.496 -10.936 20.067 2.754 3.425 -2.136 H17 XJT 51 XJT H18 H18 H 0 1 N N N N N N -3.234 -12.657 18.451 1.373 1.588 -3.012 H18 XJT 52 XJT H19 H19 H 0 1 N N N N N N -1.322 -15.795 13.969 -1.014 -0.225 -0.879 H19 XJT 53 XJT H20 H20 H 0 1 N N N N N N 0.288 -15.068 14.298 -1.682 -1.805 -0.405 H20 XJT 54 XJT H21 H21 H 0 1 N N N N N N 0.314 -11.281 10.912 0.466 -4.231 0.356 H21 XJT 55 XJT H22 H22 H 0 1 N N N N N N 1.032 -12.096 12.131 1.508 -5.392 0.980 H22 XJT 56 XJT H23 H23 H 0 1 N N N N N N -9.129 -15.464 14.545 -7.443 -2.184 -3.477 H23 XJT 57 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal XJT N3 C2 SING N N 1 XJT N2 C2 DOUB Y N 2 XJT N2 C1 SING Y N 3 XJT C2 C3 SING Y N 4 XJT N1 C1 SING N N 5 XJT C1 N4 DOUB Y N 6 XJT C4 O1 SING N N 7 XJT C4 C5 SING N N 8 XJT C3 O1 SING N N 9 XJT C3 C16 DOUB Y N 10 XJT O4 C15 DOUB N N 11 XJT N4 C16 SING Y N 12 XJT C5 C6 SING N N 13 XJT C16 C17 SING N N 14 XJT C15 O3 SING N N 15 XJT C15 C14 SING N N 16 XJT C6 O2 SING N N 17 XJT O2 C7 SING N N 18 XJT C17 C23 DOUB Y N 19 XJT C17 C18 SING Y N 20 XJT C13 C14 SING N N 21 XJT C13 C12 SING N N 22 XJT C23 C22 SING Y N 23 XJT C18 C19 DOUB Y N 24 XJT C7 C12 DOUB Y N 25 XJT C7 C8 SING Y N 26 XJT C12 C11 SING Y N 27 XJT C22 C21 DOUB Y N 28 XJT C8 C9 DOUB Y N 29 XJT C19 C21 SING Y N 30 XJT C19 C20 SING N N 31 XJT C11 C10 DOUB Y N 32 XJT F2 C20 SING N N 33 XJT C20 F1 SING N N 34 XJT C20 F3 SING N N 35 XJT C9 C10 SING Y N 36 XJT N1 H1 SING N N 37 XJT N1 H2 SING N N 38 XJT C4 H3 SING N N 39 XJT C4 H4 SING N N 40 XJT C6 H5 SING N N 41 XJT C6 H6 SING N N 42 XJT C8 H7 SING N N 43 XJT C9 H8 SING N N 44 XJT C10 H9 SING N N 45 XJT C11 H10 SING N N 46 XJT C13 H11 SING N N 47 XJT C13 H12 SING N N 48 XJT C23 H13 SING N N 49 XJT C14 H14 SING N N 50 XJT C14 H15 SING N N 51 XJT C18 H16 SING N N 52 XJT C21 H17 SING N N 53 XJT C22 H18 SING N N 54 XJT C5 H19 SING N N 55 XJT C5 H20 SING N N 56 XJT N3 H21 SING N N 57 XJT N3 H22 SING N N 58 XJT O3 H23 SING N N 59 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor XJT SMILES ACDLabs 12.01 "Nc1nc(c2cc(ccc2)C(F)(F)F)c(OCCCOc2ccccc2CCC(=O)O)c(N)n1" XJT InChI InChI 1.06 "InChI=1S/C23H23F3N4O4/c24-23(25,26)16-7-3-6-15(13-16)19-20(21(27)30-22(28)29-19)34-12-4-11-33-17-8-2-1-5-14(17)9-10-18(31)32/h1-3,5-8,13H,4,9-12H2,(H,31,32)(H4,27,28,29,30)" XJT InChIKey InChI 1.06 DHSSDBBWRIMIDY-UHFFFAOYSA-N XJT SMILES_CANONICAL CACTVS 3.385 "Nc1nc(N)c(OCCCOc2ccccc2CCC(O)=O)c(n1)c3cccc(c3)C(F)(F)F" XJT SMILES CACTVS 3.385 "Nc1nc(N)c(OCCCOc2ccccc2CCC(O)=O)c(n1)c3cccc(c3)C(F)(F)F" XJT SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc(c(c1)CCC(=O)O)OCCCOc2c(nc(nc2N)N)c3cccc(c3)C(F)(F)F" XJT SMILES "OpenEye OEToolkits" 2.0.7 "c1ccc(c(c1)CCC(=O)O)OCCCOc2c(nc(nc2N)N)c3cccc(c3)C(F)(F)F" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier XJT "SYSTEMATIC NAME" ACDLabs 12.01 "3-{2-[3-({(6M)-2,4-diamino-6-[3-(trifluoromethyl)phenyl]pyrimidin-5-yl}oxy)propoxy]phenyl}propanoic acid" XJT "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "3-[2-[3-[2,4-bis(azanyl)-6-[3-(trifluoromethyl)phenyl]pyrimidin-5-yl]oxypropoxy]phenyl]propanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site XJT "Create component" 2022-11-23 RCSB XJT "Initial release" 2023-12-13 RCSB #