data_XK5 # _chem_comp.id XK5 _chem_comp.name "6-chloro-9-(2-{[(2S)-oxan-2-yl]oxy}ethyl)-2,3,4,9-tetrahydro-1H-pyrido[3,4-b]indol-1-one" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C18 H21 Cl N2 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-06-07 _chem_comp.pdbx_modified_date 2024-12-13 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 348.824 _chem_comp.one_letter_code ? _chem_comp.three_letter_code XK5 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7G6B _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal XK5 C10 C1 C 0 1 N N N N N N -15.104 8.234 47.170 -0.314 -2.888 -0.255 C10 XK5 1 XK5 C13 C2 C 0 1 N N N N N N -13.276 10.531 47.179 -2.980 -2.652 0.881 C13 XK5 2 XK5 O14 O1 O 0 1 N N N N N N -15.919 7.335 47.214 0.874 -2.974 -0.503 O14 XK5 3 XK5 C16 C3 C 0 1 N N N N N N -14.529 6.325 44.663 0.669 -0.090 -1.401 C16 XK5 4 XK5 C17 C4 C 0 1 N N N N N N -13.682 5.098 45.008 1.691 0.331 -0.343 C17 XK5 5 XK5 C19 C5 C 0 1 N N R N N N -11.629 4.005 44.429 3.973 1.012 -0.068 C19 XK5 6 XK5 C21 C6 C 0 1 N N N N N N -12.515 2.344 42.984 5.376 0.200 1.699 C21 XK5 7 XK5 C22 C7 C 0 1 N N N N N N -11.308 2.393 42.069 6.641 0.672 0.977 C22 XK5 8 XK5 C23 C8 C 0 1 N N N N N N -10.698 3.777 42.121 6.301 1.891 0.114 C23 XK5 9 XK5 C24 C9 C 0 1 N N N N N N -10.406 4.202 43.555 5.181 1.517 -0.861 C24 XK5 10 XK5 C1 C10 C 0 1 Y N N N N N -10.802 9.760 43.245 -3.945 1.896 0.165 C1 XK5 11 XK5 C2 C11 C 0 1 Y N N N N N -11.164 8.588 42.545 -2.905 2.564 -0.470 C2 XK5 12 XK5 C3 C12 C 0 1 Y N N N N N -12.170 7.779 43.018 -1.752 1.896 -0.817 C3 XK5 13 XK5 C4 C13 C 0 1 Y N N N N N -11.369 10.196 44.412 -3.843 0.566 0.454 C4 XK5 14 XK5 C5 C14 C 0 1 Y N N N N N -12.412 9.367 44.933 -2.681 -0.139 0.110 C5 XK5 15 XK5 C6 C15 C 0 1 Y N N N N N -12.798 8.174 44.253 -1.623 0.540 -0.534 C6 XK5 16 XK5 N7 N1 N 0 1 Y N N N N N -13.848 7.544 44.993 -0.614 -0.374 -0.755 N7 XK5 17 XK5 C8 C16 C 0 1 Y N N N N N -13.241 9.485 46.105 -2.271 -1.474 0.261 C8 XK5 18 XK5 C9 C17 C 0 1 Y N N N N N -14.076 8.368 46.139 -1.013 -1.590 -0.271 C9 XK5 19 XK5 N11 N2 N 0 1 N N N N N N -15.055 9.197 48.160 -1.056 -3.980 0.042 N11 XK5 20 XK5 C12 C18 C 0 1 N N N N N N -13.789 9.897 48.465 -2.505 -3.929 0.185 C12 XK5 21 XK5 CL15 CL1 CL 0 0 N N N N N N -9.511 10.767 42.631 -5.387 2.761 0.594 CL15 XK5 22 XK5 O18 O2 O 0 1 N N N N N N -12.596 4.960 44.072 2.943 0.608 -0.973 O18 XK5 23 XK5 O20 O3 O 0 1 N N N N N N -12.157 2.713 44.328 4.364 -0.102 0.736 O20 XK5 24 XK5 H32 H1 H 0 1 N N N N N N -12.263 10.928 47.341 -2.752 -2.696 1.946 H32 XK5 25 XK5 H31 H2 H 0 1 N N N N N N -13.947 11.349 46.877 -4.056 -2.546 0.742 H31 XK5 26 XK5 H33 H3 H 0 1 N N N N N N -15.472 6.278 45.227 0.542 0.716 -2.124 H33 XK5 27 XK5 H34 H4 H 0 1 N N N N N N -14.746 6.318 43.585 1.024 -0.984 -1.913 H34 XK5 28 XK5 H35 H5 H 0 1 N N N N N N -13.274 5.213 46.023 1.336 1.226 0.169 H35 XK5 29 XK5 H36 H6 H 0 1 N N N N N N -14.313 4.198 44.966 1.818 -0.475 0.380 H36 XK5 30 XK5 H37 H7 H 0 1 N N N N N N -11.321 4.184 45.470 3.600 1.810 0.574 H37 XK5 31 XK5 H38 H8 H 0 1 N N N N N N -12.923 1.322 42.988 5.603 -0.693 2.281 H38 XK5 32 XK5 H39 H9 H 0 1 N N N N N N -13.279 3.042 42.610 5.022 0.988 2.364 H39 XK5 33 XK5 H40 H10 H 0 1 N N N N N N -10.566 1.651 42.400 7.399 0.946 1.711 H40 XK5 34 XK5 H41 H11 H 0 1 N N N N N N -11.619 2.167 41.038 7.019 -0.129 0.342 H41 XK5 35 XK5 H43 H12 H 0 1 N N N N N N -9.758 3.776 41.550 5.970 2.710 0.753 H43 XK5 36 XK5 H42 H13 H 0 1 N N N N N N -11.400 4.495 41.671 7.184 2.199 -0.447 H42 XK5 37 XK5 H45 H14 H 0 1 N N N N N N -10.121 5.264 43.566 5.529 0.732 -1.533 H45 XK5 38 XK5 H44 H15 H 0 1 N N N N N N -9.578 3.596 43.950 4.894 2.394 -1.441 H44 XK5 39 XK5 H25 H16 H 0 1 N N N N N N -10.648 8.326 41.633 -3.001 3.617 -0.692 H25 XK5 40 XK5 H26 H17 H 0 1 N N N N N N -12.475 6.889 42.488 -0.948 2.424 -1.310 H26 XK5 41 XK5 H27 H18 H 0 1 N N N N N N -11.051 11.103 44.905 -4.657 0.057 0.948 H27 XK5 42 XK5 H28 H19 H 0 1 N N N N N N -15.883 9.422 48.674 -0.605 -4.830 0.163 H28 XK5 43 XK5 H29 H20 H 0 1 N N N N N N -13.967 10.677 49.220 -2.832 -4.790 0.768 H29 XK5 44 XK5 H30 H21 H 0 1 N N N N N N -13.049 9.179 48.847 -2.959 -3.981 -0.804 H30 XK5 45 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal XK5 C1 C4 SING Y N 1 XK5 C1 CL15 SING N N 2 XK5 C1 C2 DOUB Y N 3 XK5 C2 C3 SING Y N 4 XK5 C3 C6 DOUB Y N 5 XK5 C4 C5 DOUB Y N 6 XK5 C5 C8 SING Y N 7 XK5 C5 C6 SING Y N 8 XK5 C6 N7 SING Y N 9 XK5 N7 C9 SING Y N 10 XK5 N7 C16 SING N N 11 XK5 C8 C9 DOUB Y N 12 XK5 C8 C13 SING N N 13 XK5 C9 C10 SING N N 14 XK5 C10 N11 SING N N 15 XK5 C10 O14 DOUB N N 16 XK5 N11 C12 SING N N 17 XK5 C12 C13 SING N N 18 XK5 C16 C17 SING N N 19 XK5 C17 O18 SING N N 20 XK5 O18 C19 SING N N 21 XK5 C19 O20 SING N N 22 XK5 C19 C24 SING N N 23 XK5 O20 C21 SING N N 24 XK5 C21 C22 SING N N 25 XK5 C22 C23 SING N N 26 XK5 C23 C24 SING N N 27 XK5 C13 H32 SING N N 28 XK5 C13 H31 SING N N 29 XK5 C16 H33 SING N N 30 XK5 C16 H34 SING N N 31 XK5 C17 H35 SING N N 32 XK5 C17 H36 SING N N 33 XK5 C19 H37 SING N N 34 XK5 C21 H38 SING N N 35 XK5 C21 H39 SING N N 36 XK5 C22 H40 SING N N 37 XK5 C22 H41 SING N N 38 XK5 C23 H43 SING N N 39 XK5 C23 H42 SING N N 40 XK5 C24 H45 SING N N 41 XK5 C24 H44 SING N N 42 XK5 C2 H25 SING N N 43 XK5 C3 H26 SING N N 44 XK5 C4 H27 SING N N 45 XK5 N11 H28 SING N N 46 XK5 C12 H29 SING N N 47 XK5 C12 H30 SING N N 48 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor XK5 SMILES ACDLabs 12.01 "Clc1cc2c(cc1)n(CCOC1CCCCO1)c1c2CCNC1=O" XK5 InChI InChI 1.06 "InChI=1S/C18H21ClN2O3/c19-12-4-5-15-14(11-12)13-6-7-20-18(22)17(13)21(15)8-10-24-16-3-1-2-9-23-16/h4-5,11,16H,1-3,6-10H2,(H,20,22)/t16-/m1/s1" XK5 InChIKey InChI 1.06 CUEUNNHJIGWCQO-MRXNPFEDSA-N XK5 SMILES_CANONICAL CACTVS 3.385 "Clc1ccc2n(CCO[C@@H]3CCCCO3)c4C(=O)NCCc4c2c1" XK5 SMILES CACTVS 3.385 "Clc1ccc2n(CCO[CH]3CCCCO3)c4C(=O)NCCc4c2c1" XK5 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc2c(cc1Cl)c3c(n2CCO[C@@H]4CCCCO4)C(=O)NCC3" XK5 SMILES "OpenEye OEToolkits" 2.0.7 "c1cc2c(cc1Cl)c3c(n2CCOC4CCCCO4)C(=O)NCC3" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier XK5 "SYSTEMATIC NAME" ACDLabs 12.01 "6-chloro-9-(2-{[(2R)-oxan-2-yl]oxy}ethyl)-2,3,4,9-tetrahydro-1H-pyrido[3,4-b]indol-1-one" XK5 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "6-chloranyl-9-[2-[(2~{R})-oxan-2-yl]oxyethyl]-3,4-dihydro-2~{H}-pyrido[3,4-b]indol-1-one" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site XK5 "Create component" 2023-06-07 RCSB XK5 "Initial release" 2024-12-18 RCSB #