data_XKD # _chem_comp.id XKD _chem_comp.name N-methyl-D-alaninamide _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C4 H10 N2 O" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-12-17 _chem_comp.pdbx_modified_date 2021-06-18 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 102.135 _chem_comp.one_letter_code ? _chem_comp.three_letter_code XKD _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 5S87 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal XKD C01 C1 C 0 1 N N N -1.840 33.853 -22.519 2.672 -0.155 0.039 C01 XKD 1 XKD N02 N1 N 0 1 N N N -3.203 33.816 -22.122 1.312 -0.601 -0.277 N02 XKD 2 XKD C03 C2 C 0 1 N N N -4.094 34.962 -22.159 0.268 0.225 -0.075 C03 XKD 3 XKD O04 O1 O 0 1 N N N -5.217 34.758 -21.837 0.453 1.339 0.369 O04 XKD 4 XKD C05 C3 C 0 1 N N R -3.740 36.385 -22.545 -1.130 -0.233 -0.400 C05 XKD 5 XKD C06 C4 C 0 1 N N N -2.362 36.418 -23.163 -1.469 -1.469 0.436 C06 XKD 6 XKD N07 N2 N 0 1 N N N -4.777 36.963 -23.398 -2.083 0.842 -0.093 N07 XKD 7 XKD H011 H1 H 0 0 N N N -1.394 32.856 -22.393 3.378 -0.953 -0.189 H011 XKD 8 XKD H012 H2 H 0 0 N N N -1.774 34.154 -23.575 2.913 0.725 -0.557 H012 XKD 9 XKD H013 H3 H 0 0 N N N -1.296 34.579 -21.896 2.735 0.094 1.098 H013 XKD 10 XKD H021 H4 H 0 0 N N N -3.573 32.946 -21.796 1.165 -1.492 -0.632 H021 XKD 11 XKD H051 H5 H 0 0 N N N -3.697 36.974 -21.617 -1.194 -0.483 -1.459 H051 XKD 12 XKD H062 H6 H 0 0 N N N -2.109 37.452 -23.441 -2.481 -1.801 0.201 H062 XKD 13 XKD H061 H7 H 0 0 N N N -1.626 36.043 -22.437 -0.763 -2.267 0.208 H061 XKD 14 XKD H063 H8 H 0 0 N N N -2.348 35.783 -24.061 -1.406 -1.219 1.495 H063 XKD 15 XKD H072 H9 H 0 0 N N N -4.525 37.900 -23.641 -1.842 1.690 -0.584 H072 XKD 16 XKD H1 H10 H 0 1 N N N -4.867 36.416 -24.230 -3.028 0.559 -0.303 H1 XKD 17 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal XKD N02 C01 SING N N 1 XKD C03 N02 SING N N 2 XKD O04 C03 DOUB N N 3 XKD C05 C03 SING N N 4 XKD C06 C05 SING N N 5 XKD N07 C05 SING N N 6 XKD C01 H011 SING N N 7 XKD C01 H012 SING N N 8 XKD C01 H013 SING N N 9 XKD N02 H021 SING N N 10 XKD C05 H051 SING N N 11 XKD C06 H062 SING N N 12 XKD C06 H061 SING N N 13 XKD C06 H063 SING N N 14 XKD N07 H072 SING N N 15 XKD N07 H1 SING N N 16 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor XKD SMILES ACDLabs 12.01 "CNC(=O)C(C)N" XKD InChI InChI 1.03 "InChI=1S/C4H10N2O/c1-3(5)4(7)6-2/h3H,5H2,1-2H3,(H,6,7)/t3-/m1/s1" XKD InChIKey InChI 1.03 CKQYFZPCICOPMQ-GSVOUGTGSA-N XKD SMILES_CANONICAL CACTVS 3.385 "CNC(=O)[C@@H](C)N" XKD SMILES CACTVS 3.385 "CNC(=O)[CH](C)N" XKD SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@H](C(=O)NC)N" XKD SMILES "OpenEye OEToolkits" 2.0.7 "CC(C(=O)NC)N" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier XKD "SYSTEMATIC NAME" ACDLabs 12.01 N-methyl-D-alaninamide XKD "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{R})-2-azanyl-~{N}-methyl-propanamide" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site XKD "Create component" 2020-12-17 RCSB XKD "Initial release" 2021-06-23 RCSB ##